[2024-05-07 21:09:50,833] multiqc [DEBUG ] This is MultiQC v1.11 [2024-05-07 21:09:50,833] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-05-07 21:09:50,834] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-05-07 21:09:50,834] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-07 21:09:50,836] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-05-07 21:09:50,836] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-05-07 21:09:50,837] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/SAMPLES /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/03_FASTQC/ /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/06_CollectMetrics/ [2024-05-07 21:09:51,295] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-05-07 21:09:51,296] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/SAMPLES /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/03_FASTQC/ /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/06_CollectMetrics/ [2024-05-07 21:09:51,296] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/14_final_summary/KC14_RNASEQ_multiqc_report [2024-05-07 21:09:51,296] multiqc [DEBUG ] Template : default [2024-05-07 21:09:51,296] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-05-07 21:09:51,297] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-05-07 21:09:51,305] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpkqn4jt_z [2024-05-07 21:09:51,738] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/SAMPLES [2024-05-07 21:09:51,738] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/03_FASTQC [2024-05-07 21:09:51,738] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/06_CollectMetrics [2024-05-07 21:09:52,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_132_KO_2.fq.gz [2024-05-07 21:09:52,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_132_KO_1.fq.gz [2024-05-07 21:09:52,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14132KO_M17_primary_unique.bam.bai [2024-05-07 21:09:52,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14132KO_M17_primary_unique.bam [2024-05-07 21:09:52,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:52,256] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:53,270] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14132KO_M17_featureCounts.out [2024-05-07 21:09:54,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_103_WT_1.fq.gz [2024-05-07 21:09:54,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_103_WT_2.fq.gz [2024-05-07 21:09:54,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14103WT_M03_primary_unique.bam.bai [2024-05-07 21:09:54,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14103WT_M03_primary_unique.bam [2024-05-07 21:09:54,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,366] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,366] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,367] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:54,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,385] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,385] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,389] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,389] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,390] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:55,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14103WT_M03_featureCounts.out [2024-05-07 21:09:56,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_007_GHR_1.fq.gz [2024-05-07 21:09:56,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_007_GHR_2.fq.gz [2024-05-07 21:09:56,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14007GHR_M10_primary_unique.bam.bai [2024-05-07 21:09:56,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14007GHR_M10_primary_unique.bam [2024-05-07 21:09:56,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:56,482] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,488] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:57,510] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14007GHR_M10_featureCounts.out [2024-05-07 21:09:58,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_016_Luc_1.fq.gz [2024-05-07 21:09:58,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_016_Luc_2.fq.gz [2024-05-07 21:09:58,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14016Luc_M20_primary_unique.bam.bai [2024-05-07 21:09:58,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14016Luc_M20_primary_unique.bam [2024-05-07 21:09:58,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:58,628] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:09:59,656] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14016Luc_M20_featureCounts.out [2024-05-07 21:10:00,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_015_Luc_1.fq.gz [2024-05-07 21:10:00,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_015_Luc_2.fq.gz [2024-05-07 21:10:00,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14015Luc_M19_primary_unique.bam.bai [2024-05-07 21:10:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14015Luc_M19_primary_unique.bam [2024-05-07 21:10:00,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,745] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,745] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,749] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:00,768] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,765] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,766] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:01,792] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14015Luc_M19_featureCounts.out [2024-05-07 21:10:02,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_131_KO_2.fq.gz [2024-05-07 21:10:02,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_131_KO_1.fq.gz [2024-05-07 21:10:02,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14131KO_M16_primary_unique.bam [2024-05-07 21:10:02,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14131KO_M16_primary_unique.bam.bai [2024-05-07 21:10:02,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:02,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,886] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:03,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14131KO_M16_featureCounts.out [2024-05-07 21:10:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_022_GHR_1.fq.gz [2024-05-07 21:10:04,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_022_GHR_2.fq.gz [2024-05-07 21:10:04,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14022GHR_M23_primary_unique.bam.bai [2024-05-07 21:10:04,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14022GHR_M23_primary_unique.bam [2024-05-07 21:10:05,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,019] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,039] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:05,999] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,004] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,004] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,005] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,005] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,005] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,005] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,005] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,026] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14022GHR_M23_featureCounts.out [2024-05-07 21:10:06,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_024_GHR_2.fq.gz [2024-05-07 21:10:06,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_024_GHR_1.fq.gz [2024-05-07 21:10:07,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14024GHR_M24_primary_unique.bam.bai [2024-05-07 21:10:07,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14024GHR_M24_primary_unique.bam [2024-05-07 21:10:07,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,101] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,101] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:07,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,100] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:08,122] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14024GHR_M24_featureCounts.out [2024-05-07 21:10:09,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_002_Luc_2.fq.gz [2024-05-07 21:10:09,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_002_Luc_1.fq.gz [2024-05-07 21:10:09,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14002Luc_M08_primary_unique.bam [2024-05-07 21:10:09,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14002Luc_M08_primary_unique.bam.bai [2024-05-07 21:10:09,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,175] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:09,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,180] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,180] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,180] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,180] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:10,201] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14002Luc_M08_featureCounts.out [2024-05-07 21:10:11,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_001_Luc_1.fq.gz [2024-05-07 21:10:11,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_001_Luc_2.fq.gz [2024-05-07 21:10:11,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14001Luc_M07_primary_unique.bam.bai [2024-05-07 21:10:11,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14001Luc_M07_primary_unique.bam [2024-05-07 21:10:11,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:11,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:12,304] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14001Luc_M07_featureCounts.out [2024-05-07 21:10:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_119_WT_1.fq.gz [2024-05-07 21:10:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_119_WT_2.fq.gz [2024-05-07 21:10:13,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14119WT_M13_primary_unique.bam [2024-05-07 21:10:13,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14119WT_M13_primary_unique.bam.bai [2024-05-07 21:10:13,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,365] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,365] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,365] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,365] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:13,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,370] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:14,402] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14119WT_M13_featureCounts.out [2024-05-07 21:10:15,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_113_KO_2.fq.gz [2024-05-07 21:10:15,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_113_KO_1.fq.gz [2024-05-07 21:10:15,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14113KO_M04_primary_unique.bam.bai [2024-05-07 21:10:15,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14113KO_M04_primary_unique.bam [2024-05-07 21:10:15,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:15,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,466] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:16,487] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14113KO_M04_featureCounts.out [2024-05-07 21:10:17,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_017_Luc_2.fq.gz [2024-05-07 21:10:17,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_017_Luc_1.fq.gz [2024-05-07 21:10:17,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14017Luc_M21_primary_unique.bam [2024-05-07 21:10:17,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14017Luc_M21_primary_unique.bam.bai [2024-05-07 21:10:17,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,581] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,582] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:17,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,572] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:18,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14017Luc_M21_featureCounts.out [2024-05-07 21:10:19,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_136_KO_2.fq.gz [2024-05-07 21:10:19,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_136_KO_1.fq.gz [2024-05-07 21:10:19,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14136KO_M06_primary_unique.bam [2024-05-07 21:10:19,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14136KO_M06_primary_unique.bam.bai [2024-05-07 21:10:19,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:19,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,664] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:20,686] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14136KO_M06_featureCounts.out [2024-05-07 21:10:21,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_019_GHR_1.fq.gz [2024-05-07 21:10:21,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_019_GHR_2.fq.gz [2024-05-07 21:10:21,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14019GHR_M22_primary_unique.bam.bai [2024-05-07 21:10:21,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14019GHR_M22_primary_unique.bam [2024-05-07 21:10:21,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:21,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,824] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:22,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14019GHR_M22_featureCounts.out [2024-05-07 21:10:23,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_102_WT_2.fq.gz [2024-05-07 21:10:23,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_102_WT_1.fq.gz [2024-05-07 21:10:23,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14102WT_M02_primary_unique.bam [2024-05-07 21:10:23,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14102WT_M02_primary_unique.bam.bai [2024-05-07 21:10:23,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,951] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:23,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:24,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14102WT_M02_featureCounts.out [2024-05-07 21:10:25,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_012_GHR_1.fq.gz [2024-05-07 21:10:25,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_012_GHR_2.fq.gz [2024-05-07 21:10:25,985] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14012GHR_M12_primary_unique.bam.bai [2024-05-07 21:10:26,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14012GHR_M12_primary_unique.bam [2024-05-07 21:10:26,109] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,113] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,119] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:26,141] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,110] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,112] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,115] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:27,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14012GHR_M12_featureCounts.out [2024-05-07 21:10:28,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_008_GHR_2.fq.gz [2024-05-07 21:10:28,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_008_GHR_1.fq.gz [2024-05-07 21:10:28,128] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14008GHR_M11_primary_unique.bam.bai [2024-05-07 21:10:28,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14008GHR_M11_primary_unique.bam [2024-05-07 21:10:28,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:28,264] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,291] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,292] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,292] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:29,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14008GHR_M11_featureCounts.out [2024-05-07 21:10:30,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_121_WT_2.fq.gz [2024-05-07 21:10:30,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_121_WT_1.fq.gz [2024-05-07 21:10:30,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14121WT_M15_primary_unique.bam [2024-05-07 21:10:30,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14121WT_M15_primary_unique.bam.bai [2024-05-07 21:10:30,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,450] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,450] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:30,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:31,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14121WT_M15_featureCounts.out [2024-05-07 21:10:32,433] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_120_WT_1.fq.gz [2024-05-07 21:10:32,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_120_WT_2.fq.gz [2024-05-07 21:10:32,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14120WT_M14_primary_unique.bam.bai [2024-05-07 21:10:32,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14120WT_M14_primary_unique.bam [2024-05-07 21:10:32,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,541] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:32,561] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:33,582] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14120WT_M14_featureCounts.out [2024-05-07 21:10:34,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_005_Luc_2.fq.gz [2024-05-07 21:10:34,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_005_Luc_1.fq.gz [2024-05-07 21:10:34,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14005Luc_M09_primary_unique.bam [2024-05-07 21:10:34,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14005Luc_M09_primary_unique.bam.bai [2024-05-07 21:10:34,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,692] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,692] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,693] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,693] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,693] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,693] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,693] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:34,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,698] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:35,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14005Luc_M09_featureCounts.out [2024-05-07 21:10:36,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_134_KO_1.fq.gz [2024-05-07 21:10:36,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_134_KO_2.fq.gz [2024-05-07 21:10:36,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14134KO_M18_primary_unique.bam [2024-05-07 21:10:36,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14134KO_M18_primary_unique.bam.bai [2024-05-07 21:10:36,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,802] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,802] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,803] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,803] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,803] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:36,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:37,823] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14134KO_M18_featureCounts.out [2024-05-07 21:10:38,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_101_WT_2.fq.gz [2024-05-07 21:10:38,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_101_WT_1.fq.gz [2024-05-07 21:10:38,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14101WT_M01_primary_unique.bam [2024-05-07 21:10:38,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14101WT_M01_primary_unique.bam.bai [2024-05-07 21:10:38,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,945] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,950] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:38,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,956] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:39,983] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14101WT_M01_featureCounts.out [2024-05-07 21:10:40,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_114_KO_2.fq.gz [2024-05-07 21:10:40,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14_114_KO_1.fq.gz [2024-05-07 21:10:40,986] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14114KO_M05_primary_unique.bam.bai [2024-05-07 21:10:40,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: KC14114KO_M05_primary_unique.bam [2024-05-07 21:10:41,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:41,100] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,064] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,064] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,064] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14114KO_M05_featureCounts.out [2024-05-07 21:10:42,065] multiqc 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[2024-05-07 21:10:51,834] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: KC14_015_Luc_1_fastqc.html [2024-05-07 21:10:51,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it 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ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-05-07 21:10:51,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-05-07 21:10:51,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-05-07 21:10:51,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-05-07 21:10:52,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,035] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,035] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-05-07 21:10:52,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-07 21:10:52,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-07 21:10:52,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-07 21:10:52,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-07 21:10:52,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-07 21:10:52,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-07 21:10:52,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-07 21:10:52,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-07 21:10:52,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-07 21:10:52,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-07 21:10:56,438] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-05-07 21:10:56,460] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-05-07 21:10:56,464] multiqc [DEBUG ] No samples found: custom_content [2024-05-07 21:10:56,474] multiqc [DEBUG ] No samples found: ccs [2024-05-07 21:10:56,506] multiqc [DEBUG ] No samples found: ngsderive [2024-05-07 21:10:56,544] multiqc [DEBUG ] No samples found: purple [2024-05-07 21:10:56,553] multiqc [DEBUG ] No samples found: conpair [2024-05-07 21:10:56,584] multiqc [DEBUG ] No samples found: lima [2024-05-07 21:10:56,622] multiqc [DEBUG ] No samples found: peddy [2024-05-07 21:10:56,640] multiqc [DEBUG ] No samples found: somalier [2024-05-07 21:10:56,671] multiqc [DEBUG ] No samples found: methylQA [2024-05-07 21:10:56,724] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-05-07 21:10:56,725] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-05-07 21:10:56,725] multiqc [DEBUG ] No samples found: mosdepth [2024-05-07 21:10:56,734] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-05-07 21:10:56,762] multiqc [DEBUG ] No samples found: qualimap [2024-05-07 21:10:56,795] multiqc [DEBUG ] No samples found: preseq [2024-05-07 21:10:56,812] multiqc [DEBUG ] No samples found: quast [2024-05-07 21:10:56,836] multiqc [DEBUG ] No samples found: qorts [2024-05-07 21:10:56,874] multiqc [DEBUG ] No samples found: rna_seqc [2024-05-07 21:10:56,891] multiqc [DEBUG ] No samples found: rockhopper [2024-05-07 21:10:56,919] multiqc [DEBUG ] No samples found: rsem [2024-05-07 21:10:57,009] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2024-05-07 21:10:57,035] multiqc [DEBUG ] No samples found: busco [2024-05-07 21:10:57,061] multiqc [DEBUG ] No samples found: bustools [2024-05-07 21:10:57,097] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-05-07 21:10:57,131] multiqc [DEBUG ] No samples found: gffcompare [2024-05-07 21:10:57,141] multiqc [DEBUG ] No samples found: disambiguate [2024-05-07 21:10:57,169] multiqc [DEBUG ] No samples found: supernova [2024-05-07 21:10:57,293] multiqc [DEBUG ] No samples found: deeptools [2024-05-07 21:10:57,323] multiqc [DEBUG ] No samples found: sargasso [2024-05-07 21:10:57,351] multiqc [DEBUG ] No samples found: verifybamid [2024-05-07 21:10:57,370] multiqc [DEBUG ] No samples found: mirtrace [2024-05-07 21:10:57,380] multiqc [DEBUG ] No samples found: happy [2024-05-07 21:10:57,406] multiqc [DEBUG ] No samples found: mirtop [2024-05-07 21:10:57,449] multiqc [DEBUG ] No samples found: sambamba [2024-05-07 21:10:57,462] multiqc [DEBUG ] No samples found: homer [2024-05-07 21:10:57,493] multiqc [DEBUG ] No samples found: hops [2024-05-07 21:10:57,522] multiqc [DEBUG ] No samples found: macs2 [2024-05-07 21:10:57,532] multiqc [DEBUG ] No samples found: theta2 [2024-05-07 21:10:57,561] multiqc [DEBUG ] No samples found: snpeff [2024-05-07 21:10:57,619] multiqc [DEBUG ] No samples found: gatk [2024-05-07 21:10:57,629] multiqc [DEBUG ] No samples found: htseq [2024-05-07 21:10:57,638] multiqc [DEBUG ] No samples found: bcftools [2024-05-07 21:10:57,656] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14132KO_M17_sorted [2024-05-07 21:10:57,658] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14103WT_M03_sorted [2024-05-07 21:10:57,660] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14007GHR_M10_sorted [2024-05-07 21:10:57,664] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14016Luc_M20_sorted [2024-05-07 21:10:57,666] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14015Luc_M19_sorted [2024-05-07 21:10:57,669] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14131KO_M16_sorted [2024-05-07 21:10:57,672] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14022GHR_M23_sorted [2024-05-07 21:10:57,674] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14024GHR_M24_sorted [2024-05-07 21:10:57,677] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14002Luc_M08_sorted [2024-05-07 21:10:57,679] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14001Luc_M07_sorted [2024-05-07 21:10:57,682] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14119WT_M13_sorted [2024-05-07 21:10:57,684] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14113KO_M04_sorted [2024-05-07 21:10:57,687] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14017Luc_M21_sorted [2024-05-07 21:10:57,690] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14136KO_M06_sorted [2024-05-07 21:10:57,691] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14019GHR_M22_sorted [2024-05-07 21:10:57,692] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14102WT_M02_sorted [2024-05-07 21:10:57,694] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14012GHR_M12_sorted [2024-05-07 21:10:57,695] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14008GHR_M11_sorted [2024-05-07 21:10:57,696] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14121WT_M15_sorted [2024-05-07 21:10:57,697] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14120WT_M14_sorted [2024-05-07 21:10:57,699] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14005Luc_M09_sorted [2024-05-07 21:10:57,700] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14134KO_M18_sorted [2024-05-07 21:10:57,701] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14101WT_M01_sorted [2024-05-07 21:10:57,702] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: KC14114KO_M05_sorted [2024-05-07 21:10:57,702] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2024-05-07 21:10:57,758] multiqc [DEBUG ] No samples found: fgbio [2024-05-07 21:10:57,879] multiqc [DEBUG ] No samples found: dragen [2024-05-07 21:10:57,919] multiqc [DEBUG ] No samples found: dedup [2024-05-07 21:10:57,963] multiqc [DEBUG ] No samples found: damageprofiler [2024-05-07 21:10:58,185] multiqc [DEBUG ] No samples found: biobambam2 [2024-05-07 21:10:58,209] multiqc [DEBUG ] No samples found: jcvi [2024-05-07 21:10:58,218] multiqc [DEBUG ] No samples found: mtnucratio [2024-05-07 21:10:58,223] multiqc [DEBUG ] No samples found: picard [2024-05-07 21:10:58,250] multiqc [DEBUG ] No samples found: vep [2024-05-07 21:10:58,283] multiqc [DEBUG ] No samples found: sentieon [2024-05-07 21:10:58,316] multiqc [DEBUG ] No samples found: prokka [2024-05-07 21:10:58,349] multiqc [DEBUG ] No samples found: qc3C [2024-05-07 21:10:58,372] multiqc [DEBUG ] No samples found: nanostat [2024-05-07 21:10:58,381] multiqc [DEBUG ] No samples found: samblaster [2024-05-07 21:10:58,505] multiqc.modules.samtools.samtools [INFO ] Found 72 flagstat reports [2024-05-07 21:10:58,519] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-05-07 21:10:58,528] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-05-07 21:10:58,536] multiqc [DEBUG ] No samples found: bamtools [2024-05-07 21:10:58,542] multiqc [DEBUG ] No samples found: jellyfish [2024-05-07 21:10:58,553] multiqc [DEBUG ] No samples found: vcftools [2024-05-07 21:10:58,562] multiqc [DEBUG ] No samples found: longranger [2024-05-07 21:10:58,587] multiqc [DEBUG ] No samples found: stacks [2024-05-07 21:10:58,623] multiqc [DEBUG ] No samples found: varscan2 [2024-05-07 21:10:58,647] multiqc [DEBUG ] No samples found: snippy [2024-05-07 21:10:58,723] multiqc [DEBUG ] No samples found: bbmap [2024-05-07 21:10:58,748] multiqc [DEBUG ] No samples found: bismark [2024-05-07 21:10:58,774] multiqc [DEBUG ] No samples found: biscuit [2024-05-07 21:10:58,807] multiqc [DEBUG ] No samples found: hicexplorer [2024-05-07 21:10:58,835] multiqc [DEBUG ] No samples found: hicup [2024-05-07 21:10:58,858] multiqc [DEBUG ] No samples found: hicpro [2024-05-07 21:10:58,866] multiqc [DEBUG ] No samples found: salmon [2024-05-07 21:10:58,881] multiqc [DEBUG ] No samples found: kallisto [2024-05-07 21:10:58,914] multiqc [DEBUG ] No samples found: slamdunk [2024-05-07 21:10:58,971] multiqc.modules.star.star [INFO ] Found 24 reports [2024-05-07 21:10:59,007] multiqc [DEBUG ] No samples found: hisat2 [2024-05-07 21:10:59,046] multiqc [DEBUG ] No samples found: tophat [2024-05-07 21:10:59,077] multiqc [DEBUG ] No samples found: bowtie2 [2024-05-07 21:10:59,098] multiqc [DEBUG ] No samples found: bowtie1 [2024-05-07 21:10:59,120] multiqc [DEBUG ] No samples found: snpsplit [2024-05-07 21:10:59,151] multiqc [DEBUG ] No samples found: odgi [2024-05-07 21:10:59,161] multiqc [DEBUG ] No samples found: pangolin [2024-05-07 21:10:59,169] multiqc [DEBUG ] No samples found: kat [2024-05-07 21:10:59,175] multiqc [DEBUG ] No samples found: leehom [2024-05-07 21:10:59,203] multiqc [DEBUG ] No samples found: adapterRemoval [2024-05-07 21:10:59,212] multiqc [DEBUG ] No samples found: clipandmerge [2024-05-07 21:10:59,241] multiqc [DEBUG ] No samples found: cutadapt [2024-05-07 21:10:59,251] multiqc [DEBUG ] No samples found: flexbar [2024-05-07 21:10:59,259] multiqc [DEBUG ] No samples found: kaiju [2024-05-07 21:10:59,290] multiqc [DEBUG ] No samples found: kraken [2024-05-07 21:10:59,298] multiqc [DEBUG ] No samples found: malt [2024-05-07 21:10:59,320] multiqc [DEBUG ] No samples found: trimmomatic [2024-05-07 21:10:59,342] multiqc [DEBUG ] No samples found: sickle [2024-05-07 21:10:59,375] multiqc [DEBUG ] No samples found: skewer [2024-05-07 21:10:59,385] multiqc [DEBUG ] No samples found: sortmerna [2024-05-07 21:10:59,393] multiqc [DEBUG ] No samples found: biobloomtools [2024-05-07 21:10:59,418] multiqc [DEBUG ] No samples found: fastq_screen [2024-05-07 21:10:59,450] multiqc [DEBUG ] No samples found: afterqc [2024-05-07 21:10:59,510] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,527] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,557] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,579] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,597] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,630] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,653] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,672] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,698] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,714] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,739] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,767] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,801] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,829] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,849] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,872] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,890] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,915] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,943] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,976] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:10:59,992] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:11:00,011] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:11:00,035] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:11:00,062] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-07 21:11:00,064] multiqc.modules.fastp.fastp [INFO ] Found 24 reports [2024-05-07 21:11:06,215] multiqc.modules.fastqc.fastqc [INFO ] Found 48 reports [2024-05-07 21:11:06,909] multiqc [DEBUG ] No samples found: pychopper [2024-05-07 21:11:06,924] multiqc [DEBUG ] No samples found: pycoqc [2024-05-07 21:11:06,932] multiqc [DEBUG ] No samples found: minionqc [2024-05-07 21:11:06,946] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-05-07 21:11:06,984] multiqc [DEBUG ] No samples found: clusterflow [2024-05-07 21:11:07,014] multiqc [DEBUG ] No samples found: bcl2fastq [2024-05-07 21:11:07,037] multiqc [DEBUG ] No samples found: bclconvert [2024-05-07 21:11:07,052] multiqc [DEBUG ] No samples found: interop [2024-05-07 21:11:07,081] multiqc [DEBUG ] No samples found: ivar [2024-05-07 21:11:07,110] multiqc [DEBUG ] No samples found: flash [2024-05-07 21:11:07,120] multiqc [DEBUG ] No samples found: seqyclean [2024-05-07 21:11:07,129] multiqc [DEBUG ] No samples found: optitype [2024-05-07 21:11:07,237] multiqc [INFO ] Compressing plot data [2024-05-07 21:11:09,213] multiqc [INFO ] Report : multiqc_report.html [2024-05-07 21:11:09,213] multiqc [INFO ] Data : multiqc_data [2024-05-07 21:11:09,213] multiqc [DEBUG ] Moving data file from '/scratch/tmpkqn4jt_z/multiqc_data' to '/projectnb/wax-dk/max/SIA_NUS/KC14_RNASEQ/Scripts/14_final_summary/KC14_RNASEQ_multiqc_report/multiqc_data' [2024-05-07 21:11:09,903] multiqc [INFO ] MultiQC complete