[2023-11-14 14:31:45,910] multiqc [DEBUG ] This is MultiQC v1.11 [2023-11-14 14:31:45,910] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-14 14:31:45,911] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-11-14 14:31:45,912] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-14 14:31:45,913] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-11-14 14:31:45,913] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-11-14 14:31:45,914] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/PRJNA395963/SAMPLES /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/06_CollectMetrics/ [2023-11-14 14:31:46,331] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-14 14:31:46,331] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/PRJNA395963/SAMPLES /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/06_CollectMetrics/ [2023-11-14 14:31:46,331] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/14_final_summary/multiqc_report [2023-11-14 14:31:46,331] multiqc [DEBUG ] Template : default [2023-11-14 14:31:46,331] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-11-14 14:31:46,332] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-11-14 14:31:46,332] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpc3g8mpoq [2023-11-14 14:31:46,631] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/PRJNA395963/SAMPLES [2023-11-14 14:31:46,631] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/03_FASTQC [2023-11-14 14:31:46,632] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/06_CollectMetrics [2023-11-14 14:31:46,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874311_pass_2.fastq.gz [2023-11-14 14:31:46,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874311_pass_1.fastq.gz [2023-11-14 14:31:46,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M7_hist.pdf [2023-11-14 14:31:46,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:46,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:46,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:46,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:46,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:47,040] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,048] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:47,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,085] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,085] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:48,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M7_featureCounts.out [2023-11-14 14:31:49,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:49,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:49,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M7_metrics [2023-11-14 14:31:49,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874313_pass_2.fastq.gz [2023-11-14 14:31:49,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874313_pass_1.fastq.gz [2023-11-14 14:31:49,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M5_hist.pdf [2023-11-14 14:31:49,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:49,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:49,171] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:49,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:49,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:49,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:49,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,285] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,285] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:50,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M5_featureCounts.out [2023-11-14 14:31:51,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:51,250] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:51,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M5_metrics [2023-11-14 14:31:51,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874298_pass_1.fastq.gz [2023-11-14 14:31:51,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874298_pass_2.fastq.gz [2023-11-14 14:31:51,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:51,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:51,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:51,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:51,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:51,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M13_hist.pdf [2023-11-14 14:31:51,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:51,484] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:52,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M13_featureCounts.out [2023-11-14 14:31:53,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:53,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:53,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M13_metrics [2023-11-14 14:31:53,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874292_pass_2.fastq.gz [2023-11-14 14:31:53,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874292_pass_1.fastq.gz [2023-11-14 14:31:53,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:53,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:53,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:53,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:53,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:53,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M17_hist.pdf [2023-11-14 14:31:53,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:53,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,659] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,664] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:54,687] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M17_featureCounts.out [2023-11-14 14:31:55,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:55,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:55,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M17_metrics [2023-11-14 14:31:55,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874293_pass_1.fastq.gz [2023-11-14 14:31:55,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874293_pass_2.fastq.gz [2023-11-14 14:31:55,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M10_hist.pdf [2023-11-14 14:31:55,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:55,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:55,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:55,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:55,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:55,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:55,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:56,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M10_featureCounts.out [2023-11-14 14:31:57,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:57,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:57,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M10_metrics [2023-11-14 14:31:57,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874295_pass_2.fastq.gz [2023-11-14 14:31:57,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874295_pass_1.fastq.gz [2023-11-14 14:31:57,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M12_hist.pdf [2023-11-14 14:31:57,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:31:57,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:31:57,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:31:57,982] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:31:57,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:31:58,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:58,072] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:31:59,094] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M12_featureCounts.out [2023-11-14 14:32:00,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:32:00,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:32:00,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M12_metrics [2023-11-14 14:32:00,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874304_pass_1.fastq.gz [2023-11-14 14:32:00,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874304_pass_2.fastq.gz [2023-11-14 14:32:00,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:00,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:00,193] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:00,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:00,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:00,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M19_hist.pdf [2023-11-14 14:32:00,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,252] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,252] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,252] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:00,272] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:01,271] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M19_featureCounts.out [2023-11-14 14:32:02,221] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:02,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:02,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M19_metrics [2023-11-14 14:32:02,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874305_pass_2.fastq.gz [2023-11-14 14:32:02,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874305_pass_1.fastq.gz [2023-11-14 14:32:02,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M2_hist.pdf [2023-11-14 14:32:02,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:02,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:02,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:02,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:02,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:02,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,442] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,442] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,447] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:02,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,400] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:03,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M2_featureCounts.out [2023-11-14 14:32:04,298] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:04,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:04,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M2_metrics [2023-11-14 14:32:04,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874310_pass_2.fastq.gz [2023-11-14 14:32:04,349] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874310_pass_1.fastq.gz [2023-11-14 14:32:04,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:04,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:04,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:04,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:04,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:04,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M3_hist.pdf [2023-11-14 14:32:04,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:04,542] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:05,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M3_featureCounts.out [2023-11-14 14:32:06,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:06,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:06,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M3_metrics [2023-11-14 14:32:06,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874291_pass_1.fastq.gz [2023-11-14 14:32:06,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874291_pass_2.fastq.gz [2023-11-14 14:32:06,500] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M18_hist.pdf [2023-11-14 14:32:06,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:06,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:06,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:06,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:06,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:06,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,589] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:06,617] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:07,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M18_featureCounts.out [2023-11-14 14:32:08,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:08,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:08,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M18_metrics [2023-11-14 14:32:08,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874297_pass_2.fastq.gz [2023-11-14 14:32:08,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874297_pass_1.fastq.gz [2023-11-14 14:32:08,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:08,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:08,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:08,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:08,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:08,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M14_hist.pdf [2023-11-14 14:32:08,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:08,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:09,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M14_featureCounts.out [2023-11-14 14:32:10,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:10,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:10,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M14_metrics [2023-11-14 14:32:10,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874302_pass_1.fastq.gz [2023-11-14 14:32:10,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874302_pass_2.fastq.gz [2023-11-14 14:32:10,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M21_hist.pdf [2023-11-14 14:32:10,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:10,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:10,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:10,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:10,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:10,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,729] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:10,751] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:11,696] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M21_featureCounts.out [2023-11-14 14:32:12,634] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:12,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:12,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M21_metrics [2023-11-14 14:32:12,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874301_pass_1.fastq.gz [2023-11-14 14:32:12,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874301_pass_2.fastq.gz [2023-11-14 14:32:12,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M22_hist.pdf [2023-11-14 14:32:12,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:12,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:12,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:12,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:12,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:12,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,871] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,871] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:12,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,880] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,881] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,881] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,881] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:13,903] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M22_featureCounts.out [2023-11-14 14:32:14,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:14,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:14,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M22_metrics [2023-11-14 14:32:14,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874303_pass_2.fastq.gz [2023-11-14 14:32:14,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874303_pass_1.fastq.gz [2023-11-14 14:32:14,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:14,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:14,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:14,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:14,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:14,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M20_hist.pdf [2023-11-14 14:32:15,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,040] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:15,061] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,018] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,018] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,024] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M20_featureCounts.out [2023-11-14 14:32:16,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:16,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:16,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M20_metrics [2023-11-14 14:32:16,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874296_pass_1.fastq.gz [2023-11-14 14:32:17,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874296_pass_2.fastq.gz [2023-11-14 14:32:17,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M11_hist.pdf [2023-11-14 14:32:17,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:17,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:17,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:17,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:17,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:17,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,164] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,170] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,170] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:17,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:18,176] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M11_featureCounts.out [2023-11-14 14:32:19,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:19,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:19,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M11_metrics [2023-11-14 14:32:19,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874314_pass_2.fastq.gz [2023-11-14 14:32:19,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874314_pass_1.fastq.gz [2023-11-14 14:32:19,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M6_hist.pdf [2023-11-14 14:32:19,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:19,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:19,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:19,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:19,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:19,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,341] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,341] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:19,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,348] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,355] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:20,376] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M6_featureCounts.out [2023-11-14 14:32:21,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:21,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:21,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M6_metrics [2023-11-14 14:32:21,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874312_pass_2.fastq.gz [2023-11-14 14:32:21,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874312_pass_1.fastq.gz [2023-11-14 14:32:21,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M8_hist.pdf [2023-11-14 14:32:21,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:21,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:21,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:21,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:21,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:21,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,595] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:21,621] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,602] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:22,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M8_featureCounts.out [2023-11-14 14:32:23,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:23,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:23,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M8_metrics [2023-11-14 14:32:23,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874294_pass_2.fastq.gz [2023-11-14 14:32:23,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874294_pass_1.fastq.gz [2023-11-14 14:32:23,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M9_hist.pdf [2023-11-14 14:32:23,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:23,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:23,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:23,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:23,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:23,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,747] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:23,769] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,755] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,760] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,760] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,760] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,760] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,760] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:24,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M9_featureCounts.out [2023-11-14 14:32:25,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:25,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:25,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M9_metrics [2023-11-14 14:32:25,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874309_pass_2.fastq.gz [2023-11-14 14:32:25,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874309_pass_1.fastq.gz [2023-11-14 14:32:25,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:25,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:25,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:25,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:25,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:25,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M4_hist.pdf [2023-11-14 14:32:25,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:25,990] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,982] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:26,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:27,010] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M4_featureCounts.out [2023-11-14 14:32:27,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:27,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:27,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M4_metrics [2023-11-14 14:32:27,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874308_pass_2.fastq.gz [2023-11-14 14:32:27,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874308_pass_1.fastq.gz [2023-11-14 14:32:28,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M23_hist.pdf [2023-11-14 14:32:28,052] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:28,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:28,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:28,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:28,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:28,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,148] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,148] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,148] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,148] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,149] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,149] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,149] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:28,171] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,131] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,152] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:29,178] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M23_featureCounts.out [2023-11-14 14:32:30,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:30,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:30,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M23_metrics [2023-11-14 14:32:30,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874306_pass_1.fastq.gz [2023-11-14 14:32:30,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874306_pass_2.fastq.gz [2023-11-14 14:32:30,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:30,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:30,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:30,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:30,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:30,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M1_hist.pdf [2023-11-14 14:32:30,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,379] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,379] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,384] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,385] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:30,406] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,362] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,362] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,367] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:31,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M1_featureCounts.out [2023-11-14 14:32:32,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:32,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:32,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M1_metrics [2023-11-14 14:32:32,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874307_pass_1.fastq.gz [2023-11-14 14:32:32,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874307_pass_2.fastq.gz [2023-11-14 14:32:32,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:32,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:32,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:32,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:32,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:32,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M24_hist.pdf [2023-11-14 14:32:32,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:32,610] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:33,604] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M24_featureCounts.out [2023-11-14 14:32:34,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:34,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:34,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M24_metrics [2023-11-14 14:32:34,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874300_pass_1.fastq.gz [2023-11-14 14:32:34,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR5874300_pass_2.fastq.gz [2023-11-14 14:32:34,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:34,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:34,682] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:34,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:34,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:34,710] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PRJNA395963_M15_hist.pdf [2023-11-14 14:32:34,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:34,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:35,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M15_featureCounts.out [2023-11-14 14:32:36,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M15_metrics [2023-11-14 14:32:36,768] multiqc [DEBUG ] File 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exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:36,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:37,076] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[2023-11-14 14:32:38,075] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:38,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: PRJNA395963_M16_featureCounts.out [2023-11-14 14:32:39,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PRJNA395963_M16_metrics [2023-11-14 14:32:39,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PRJNA395963_M16_metrics [2023-11-14 14:32:39,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PRJNA395963_M16_metrics [2023-11-14 14:32:39,095] multiqc [DEBUG ] File ignored by 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filesize limit: fastq_reads.qsub [2023-11-14 14:32:39,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M3.o2552890 [2023-11-14 14:32:39,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M3.o2552890 [2023-11-14 14:32:39,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M3.o2552890 [2023-11-14 14:32:39,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M3.o2552890 [2023-11-14 14:32:39,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M3.o2552890 [2023-11-14 14:32:39,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_03_PRJNA395963_PRJNA395963_M9.o2552896 [2023-11-14 14:32:39,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M9.o2552896 [2023-11-14 14:32:39,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M23.o2552910 [2023-11-14 14:32:39,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M23.o2552910 [2023-11-14 14:32:39,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M23.o2552910 [2023-11-14 14:32:39,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M23.o2552910 [2023-11-14 14:32:39,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M23.o2552910 [2023-11-14 14:32:39,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M2.o2552888 [2023-11-14 14:32:39,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M2.o2552888 [2023-11-14 14:32:39,438] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M2.o2552888 [2023-11-14 14:32:39,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M2.o2552888 [2023-11-14 14:32:39,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M2.o2552888 [2023-11-14 14:32:39,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search 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exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M12.o2552899 [2023-11-14 14:32:39,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M12.o2552899 [2023-11-14 14:32:39,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M15.o2552902 [2023-11-14 14:32:39,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M15.o2552902 [2023-11-14 14:32:39,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M15.o2552902 [2023-11-14 14:32:39,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M15.o2552902 [2023-11-14 14:32:39,642] multiqc [DEBUG ] File ignored by 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] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M1.o2552887 [2023-11-14 14:32:39,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M1.o2552887 [2023-11-14 14:32:39,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M1.o2552887 [2023-11-14 14:32:39,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M11.o2552898 [2023-11-14 14:32:39,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M11.o2552898 [2023-11-14 14:32:39,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M11.o2552898 [2023-11-14 14:32:39,857] multiqc [DEBUG ] 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] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M7.o2552894 [2023-11-14 14:32:39,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M21.o2552908 [2023-11-14 14:32:39,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M21.o2552908 [2023-11-14 14:32:39,968] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M21.o2552908 [2023-11-14 14:32:39,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M21.o2552908 [2023-11-14 14:32:39,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M21.o2552908 [2023-11-14 14:32:40,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M8.o2552895 [2023-11-14 14:32:40,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M8.o2552895 [2023-11-14 14:32:40,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M8.o2552895 [2023-11-14 14:32:40,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M8.o2552895 [2023-11-14 14:32:40,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M8.o2552895 [2023-11-14 14:32:40,040] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M24.o2552911 [2023-11-14 14:32:40,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M24.o2552911 [2023-11-14 14:32:40,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M24.o2552911 [2023-11-14 14:32:40,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M24.o2552911 [2023-11-14 14:32:40,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M24.o2552911 [2023-11-14 14:32:40,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M18.o2552905 [2023-11-14 14:32:40,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M18.o2552905 [2023-11-14 14:32:40,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M18.o2552905 [2023-11-14 14:32:40,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M18.o2552905 [2023-11-14 14:32:40,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M18.o2552905 [2023-11-14 14:32:40,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M17.o2552904 [2023-11-14 14:32:40,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M17.o2552904 [2023-11-14 14:32:40,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M17.o2552904 [2023-11-14 14:32:40,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M17.o2552904 [2023-11-14 14:32:40,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M17.o2552904 [2023-11-14 14:32:40,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M5.o2552892 [2023-11-14 14:32:40,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M5.o2552892 [2023-11-14 14:32:40,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_PRJNA395963_PRJNA395963_M5.o2552892 [2023-11-14 14:32:40,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,009] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874302_pass_2_fastqc.html [2023-11-14 14:32:41,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,100] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874302_pass_1_fastqc.html [2023-11-14 14:32:41,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded 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multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874295_pass_2_fastqc.html [2023-11-14 14:32:41,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874295_pass_2_fastqc.html [2023-11-14 14:32:41,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874295_pass_2_fastqc.html [2023-11-14 14:32:41,595] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874291_pass_1_fastqc.html [2023-11-14 14:32:41,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874291_pass_1_fastqc.html [2023-11-14 14:32:41,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874291_pass_1_fastqc.html [2023-11-14 14:32:41,598] multiqc [DEBUG ] File ignored by lima/summary because it 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ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,709] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,709] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,709] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,709] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874291_pass_2_fastqc.html [2023-11-14 14:32:41,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded 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14:32:41,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874296_pass_1_fastqc.html [2023-11-14 14:32:41,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874296_pass_1_fastqc.html [2023-11-14 14:32:41,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874296_pass_1_fastqc.html [2023-11-14 14:32:41,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874296_pass_1_fastqc.html [2023-11-14 14:32:41,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874296_pass_2_fastqc.html [2023-11-14 14:32:41,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874296_pass_2_fastqc.html [2023-11-14 14:32:41,871] multiqc [DEBUG ] File ignored by 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14:32:42,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874313_pass_1_fastqc.html [2023-11-14 14:32:42,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874313_pass_1_fastqc.html [2023-11-14 14:32:42,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874313_pass_1_fastqc.html [2023-11-14 14:32:42,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874313_pass_1_fastqc.html [2023-11-14 14:32:42,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874313_pass_1_fastqc.html [2023-11-14 14:32:42,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,128] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,247] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874299_pass_2_fastqc.html [2023-11-14 14:32:42,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,350] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874299_pass_1_fastqc.html [2023-11-14 14:32:42,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 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] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,576] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:42,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 14:32:42,808] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874310_pass_2_fastqc.html [2023-11-14 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14:32:43,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR5874306_pass_1_fastqc.html [2023-11-14 14:32:43,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded 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] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,108] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2023-11-14 14:32:44,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search 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] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR5874298_pass_1_fastqc.html [2023-11-14 14:32:46,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR5874298_pass_1_fastqc.html [2023-11-14 14:32:46,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR5874298_pass_1_fastqc.html [2023-11-14 14:32:46,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR5874298_pass_2_fastqc.html [2023-11-14 14:32:46,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR5874298_pass_2_fastqc.html [2023-11-14 14:32:46,179] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR5874298_pass_2_fastqc.html [2023-11-14 14:32:46,179] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search 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[2023-11-14 14:32:48,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M7.o2554489 [2023-11-14 14:32:48,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M7.o2554489 [2023-11-14 14:32:48,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M15.o2554497 [2023-11-14 14:32:48,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M15.o2554497 [2023-11-14 14:32:48,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M15.o2554497 [2023-11-14 14:32:48,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M9.o2554491 [2023-11-14 14:32:48,646] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M9.o2554491 [2023-11-14 14:32:48,646] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M9.o2554491 [2023-11-14 14:32:48,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M9.o2554491 [2023-11-14 14:32:48,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M22.o2554504 [2023-11-14 14:32:48,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M22.o2554504 [2023-11-14 14:32:48,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M22.o2554504 [2023-11-14 14:32:48,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M22.o2554504 [2023-11-14 14:32:48,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M22.o2554504 [2023-11-14 14:32:48,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M18.o2554500 [2023-11-14 14:32:48,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M18.o2554500 [2023-11-14 14:32:48,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M18.o2554500 [2023-11-14 14:32:48,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M18.o2554500 [2023-11-14 14:32:48,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M18.o2554500 [2023-11-14 14:32:48,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M20.o2554502 [2023-11-14 14:32:48,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M20.o2554502 [2023-11-14 14:32:48,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M20.o2554502 [2023-11-14 14:32:48,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M20.o2554502 [2023-11-14 14:32:48,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M20.o2554502 [2023-11-14 14:32:48,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M6.o2554488 [2023-11-14 14:32:48,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M6.o2554488 [2023-11-14 14:32:48,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M6.o2554488 [2023-11-14 14:32:48,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M6.o2554488 [2023-11-14 14:32:48,739] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_PRJNA395963_PRJNA395963_M6.o2554488 [2023-11-14 14:32:48,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-11-14 14:32:48,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-11-14 14:32:48,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-11-14 14:32:48,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 14:32:48,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 14:32:48,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 14:32:48,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-11-14 14:32:48,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:48,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 14:32:49,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 14:32:49,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 14:32:49,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 14:32:49,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 14:32:49,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 14:32:49,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 14:32:49,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 14:32:49,654] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 14:32:49,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 14:32:49,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 14:32:51,839] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 14:32:51,849] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 14:32:51,853] multiqc [DEBUG ] No samples found: custom_content [2023-11-14 14:32:51,863] multiqc [DEBUG ] No samples found: ccs [2023-11-14 14:32:51,884] multiqc [DEBUG ] No samples found: ngsderive [2023-11-14 14:32:51,894] multiqc [DEBUG ] No samples found: purple [2023-11-14 14:32:51,902] multiqc [DEBUG ] No samples found: conpair [2023-11-14 14:32:51,924] multiqc [DEBUG ] No samples found: lima [2023-11-14 14:32:51,946] multiqc [DEBUG ] No samples found: peddy [2023-11-14 14:32:51,956] multiqc [DEBUG ] No samples found: somalier [2023-11-14 14:32:51,976] multiqc [DEBUG ] No samples found: methylQA [2023-11-14 14:32:52,009] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-11-14 14:32:52,009] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-11-14 14:32:52,009] multiqc [DEBUG ] No samples found: mosdepth [2023-11-14 14:32:52,018] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-14 14:32:52,028] multiqc [DEBUG ] No samples found: qualimap [2023-11-14 14:32:52,044] multiqc [DEBUG ] No samples found: preseq [2023-11-14 14:32:52,062] multiqc [DEBUG ] No samples found: quast [2023-11-14 14:32:52,082] multiqc [DEBUG ] No samples found: qorts [2023-11-14 14:32:52,104] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-14 14:32:52,129] multiqc [DEBUG ] No samples found: rockhopper [2023-11-14 14:32:52,152] multiqc [DEBUG ] No samples found: rsem [2023-11-14 14:32:52,226] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2023-11-14 14:32:52,250] multiqc [DEBUG ] No samples found: busco [2023-11-14 14:32:52,257] multiqc [DEBUG ] No samples found: bustools [2023-11-14 14:32:52,280] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-14 14:32:52,298] multiqc [DEBUG ] No samples found: gffcompare [2023-11-14 14:32:52,307] multiqc [DEBUG ] No samples found: disambiguate [2023-11-14 14:32:52,324] multiqc [DEBUG ] No samples found: supernova [2023-11-14 14:32:52,375] multiqc [DEBUG ] No samples found: deeptools [2023-11-14 14:32:52,394] multiqc [DEBUG ] No samples found: sargasso [2023-11-14 14:32:52,420] multiqc [DEBUG ] No samples found: verifybamid [2023-11-14 14:32:52,435] multiqc [DEBUG ] No samples found: mirtrace [2023-11-14 14:32:52,443] multiqc [DEBUG ] No samples found: happy [2023-11-14 14:32:52,451] multiqc [DEBUG ] No samples found: mirtop [2023-11-14 14:32:52,474] multiqc [DEBUG ] No samples found: sambamba [2023-11-14 14:32:52,488] multiqc [DEBUG ] No samples found: homer [2023-11-14 14:32:52,503] multiqc [DEBUG ] No samples found: hops [2023-11-14 14:32:52,510] multiqc [DEBUG ] No samples found: macs2 [2023-11-14 14:32:52,518] multiqc [DEBUG ] No samples found: theta2 [2023-11-14 14:32:52,536] multiqc [DEBUG ] No samples found: snpeff [2023-11-14 14:32:52,569] multiqc [DEBUG ] No samples found: gatk [2023-11-14 14:32:52,578] multiqc [DEBUG ] No samples found: htseq [2023-11-14 14:32:52,588] multiqc [DEBUG ] No samples found: bcftools [2023-11-14 14:32:52,608] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M7_sorted [2023-11-14 14:32:52,611] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M5_sorted [2023-11-14 14:32:52,613] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M13_sorted [2023-11-14 14:32:52,616] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M17_sorted [2023-11-14 14:32:52,619] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M10_sorted [2023-11-14 14:32:52,622] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M12_sorted [2023-11-14 14:32:52,625] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M19_sorted [2023-11-14 14:32:52,627] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M2_sorted [2023-11-14 14:32:52,630] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M3_sorted [2023-11-14 14:32:52,633] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M18_sorted [2023-11-14 14:32:52,636] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M14_sorted [2023-11-14 14:32:52,639] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M21_sorted [2023-11-14 14:32:52,642] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M22_sorted [2023-11-14 14:32:52,644] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M20_sorted [2023-11-14 14:32:52,647] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M11_sorted [2023-11-14 14:32:52,650] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M6_sorted [2023-11-14 14:32:52,652] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M8_sorted [2023-11-14 14:32:52,655] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M9_sorted [2023-11-14 14:32:52,658] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M4_sorted [2023-11-14 14:32:52,660] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M23_sorted [2023-11-14 14:32:52,663] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M1_sorted [2023-11-14 14:32:52,666] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M24_sorted [2023-11-14 14:32:52,669] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M15_sorted [2023-11-14 14:32:52,671] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: PRJNA395963_M16_sorted [2023-11-14 14:32:52,672] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2023-11-14 14:32:52,719] multiqc [DEBUG ] No samples found: fgbio [2023-11-14 14:32:52,793] multiqc [DEBUG ] No samples found: dragen [2023-11-14 14:32:52,809] multiqc [DEBUG ] No samples found: dedup [2023-11-14 14:32:52,832] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-14 14:32:52,984] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-14 14:32:53,006] multiqc [DEBUG ] No samples found: jcvi [2023-11-14 14:32:53,015] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-14 14:32:53,539] multiqc.modules.picard.picard [INFO ] Found 24 InsertSizeMetrics reports [2023-11-14 14:32:53,599] multiqc.modules.picard.picard [INFO ] Found 24 RnaSeqMetrics reports [2023-11-14 14:32:53,616] multiqc [DEBUG ] No samples found: vep [2023-11-14 14:32:53,635] multiqc [DEBUG ] No samples found: sentieon [2023-11-14 14:32:53,644] multiqc [DEBUG ] No samples found: prokka [2023-11-14 14:32:53,665] multiqc [DEBUG ] No samples found: qc3C [2023-11-14 14:32:53,686] multiqc [DEBUG ] No samples found: nanostat [2023-11-14 14:32:53,694] multiqc [DEBUG ] No samples found: samblaster [2023-11-14 14:32:53,817] multiqc.modules.samtools.samtools [INFO ] Found 72 flagstat reports [2023-11-14 14:32:53,830] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-14 14:32:53,837] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-11-14 14:32:53,846] multiqc [DEBUG ] No samples found: bamtools [2023-11-14 14:32:53,854] multiqc [DEBUG ] No samples found: jellyfish [2023-11-14 14:32:53,866] multiqc [DEBUG ] No samples found: vcftools [2023-11-14 14:32:53,874] multiqc [DEBUG ] No samples found: longranger [2023-11-14 14:32:53,898] multiqc [DEBUG ] No samples found: stacks [2023-11-14 14:32:53,907] multiqc [DEBUG ] No samples found: varscan2 [2023-11-14 14:32:53,926] multiqc [DEBUG ] No samples found: snippy [2023-11-14 14:32:53,967] multiqc [DEBUG ] No samples found: bbmap [2023-11-14 14:32:53,980] multiqc [DEBUG ] No samples found: bismark [2023-11-14 14:32:53,997] multiqc [DEBUG ] No samples found: biscuit [2023-11-14 14:32:54,007] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-14 14:32:54,022] multiqc [DEBUG ] No samples found: hicup [2023-11-14 14:32:54,038] multiqc [DEBUG ] No samples found: hicpro [2023-11-14 14:32:54,047] multiqc [DEBUG ] No samples found: salmon [2023-11-14 14:32:54,055] multiqc [DEBUG ] No samples found: kallisto [2023-11-14 14:32:54,071] multiqc [DEBUG ] No samples found: slamdunk [2023-11-14 14:32:54,118] multiqc.modules.star.star [INFO ] Found 24 reports [2023-11-14 14:32:54,125] multiqc [DEBUG ] No samples found: hisat2 [2023-11-14 14:32:54,151] multiqc [DEBUG ] No samples found: tophat [2023-11-14 14:32:54,171] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-14 14:32:54,182] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-14 14:32:54,208] multiqc [DEBUG ] No samples found: snpsplit [2023-11-14 14:32:54,232] multiqc [DEBUG ] No samples found: odgi [2023-11-14 14:32:54,241] multiqc [DEBUG ] No samples found: pangolin [2023-11-14 14:32:54,249] multiqc [DEBUG ] No samples found: kat [2023-11-14 14:32:54,256] multiqc [DEBUG ] No samples found: leehom [2023-11-14 14:32:54,273] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-14 14:32:54,283] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-14 14:32:54,302] multiqc [DEBUG ] No samples found: cutadapt [2023-11-14 14:32:54,311] multiqc [DEBUG ] No samples found: flexbar [2023-11-14 14:32:54,319] multiqc [DEBUG ] No samples found: kaiju [2023-11-14 14:32:54,328] multiqc [DEBUG ] No samples found: kraken [2023-11-14 14:32:54,335] multiqc [DEBUG ] No samples found: malt [2023-11-14 14:32:54,352] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-14 14:32:54,362] multiqc [DEBUG ] No samples found: sickle [2023-11-14 14:32:54,380] multiqc [DEBUG ] No samples found: skewer [2023-11-14 14:32:54,390] multiqc [DEBUG ] No samples found: sortmerna [2023-11-14 14:32:54,397] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-14 14:32:54,417] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-14 14:32:54,447] multiqc [DEBUG ] No samples found: afterqc [2023-11-14 14:32:54,487] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,501] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,521] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,538] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,577] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,594] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,615] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,635] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,645] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,670] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,718] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,740] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,751] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,773] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,797] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,813] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,850] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,870] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,896] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,934] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,954] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,971] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,987] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-11-14 14:32:54,988] multiqc.modules.fastp.fastp [INFO ] Found 24 reports [2023-11-14 14:32:56,771] multiqc.modules.fastqc.fastqc [INFO ] Found 48 reports [2023-11-14 14:32:57,310] multiqc [DEBUG ] No samples found: pychopper [2023-11-14 14:32:57,338] multiqc [DEBUG ] No samples found: pycoqc [2023-11-14 14:32:57,349] multiqc [DEBUG ] No samples found: minionqc [2023-11-14 14:32:57,363] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-14 14:32:57,388] multiqc [DEBUG ] No samples found: clusterflow [2023-11-14 14:32:57,411] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-14 14:32:57,423] multiqc [DEBUG ] No samples found: bclconvert [2023-11-14 14:32:57,446] multiqc [DEBUG ] No samples found: interop [2023-11-14 14:32:57,471] multiqc [DEBUG ] No samples found: ivar [2023-11-14 14:32:57,494] multiqc [DEBUG ] No samples found: flash [2023-11-14 14:32:57,505] multiqc [DEBUG ] No samples found: seqyclean [2023-11-14 14:32:57,512] multiqc [DEBUG ] No samples found: optitype [2023-11-14 14:32:57,637] multiqc [INFO ] Compressing plot data [2023-11-14 14:32:59,673] multiqc [INFO ] Report : multiqc_report.html [2023-11-14 14:32:59,688] multiqc [INFO ] Data : multiqc_data [2023-11-14 14:32:59,688] multiqc [DEBUG ] Moving data file from '/scratch/tmpc3g8mpoq/multiqc_data' to '/projectnb/wax-dk/max/RK_grant_proposal/PRJNA395963/Scripts/14_final_summary/multiqc_report/multiqc_data' [2023-11-14 14:33:00,232] multiqc [INFO ] MultiQC complete