Sample	command
SRR5874291_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874291_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874291_pass_2.fastq.gz 
SRR5874292_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874292_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874292_pass_2.fastq.gz 
SRR5874293_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874293_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874293_pass_2.fastq.gz 
SRR5874294_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874294_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874294_pass_2.fastq.gz 
SRR5874295_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874295_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874295_pass_2.fastq.gz 
SRR5874296_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874296_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874296_pass_2.fastq.gz 
SRR5874297_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874297_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874297_pass_2.fastq.gz 
SRR5874298_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874298_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874298_pass_2.fastq.gz 
SRR5874299_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874299_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874299_pass_2.fastq.gz 
SRR5874300_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874300_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874300_pass_2.fastq.gz 
SRR5874301_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874301_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874301_pass_2.fastq.gz 
SRR5874302_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874302_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874302_pass_2.fastq.gz 
SRR5874303_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874303_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874303_pass_2.fastq.gz 
SRR5874304_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874304_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874304_pass_2.fastq.gz 
SRR5874305_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874305_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874305_pass_2.fastq.gz 
SRR5874306_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874306_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874306_pass_2.fastq.gz 
SRR5874307_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874307_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874307_pass_2.fastq.gz 
SRR5874308_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874308_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874308_pass_2.fastq.gz 
SRR5874309_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874309_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874309_pass_2.fastq.gz 
SRR5874310_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874310_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874310_pass_2.fastq.gz 
SRR5874311_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874311_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874311_pass_2.fastq.gz 
SRR5874312_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874312_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874312_pass_2.fastq.gz 
SRR5874313_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874313_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874313_pass_2.fastq.gz 
SRR5874314_pass_1	fastp -i /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874314_pass_1.fastq.gz -I /projectnb/wax-es/PUBLIC_RNASEQ_DATA/Rhonda_Kineman_grant_proposal_2023_11_13/PRJNA395963/FASTQ/SRR5874314_pass_2.fastq.gz