[2025-08-21 15:17:12,253] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-21 15:17:12,254] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-21 15:17:12,254] multiqc [DEBUG ] No MultiQC config found: /usr3/graduate/yselena/.multiqc_config.yaml [2025-08-21 15:17:12,255] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-21 15:17:12,257] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-es/Elena/XE96Test/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-21 15:17:12,257] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-21 15:17:12,257] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-21 15:17:12,257] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-es/Elena/XE96Test/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/Elena/XE96Test/SAMPLES /projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/ /projectnb/wax-es/Elena/XE96Test/Scripts/06_CollectMetrics/ [2025-08-21 15:17:12,664] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-21 15:17:12,665] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-es/Elena/XE96Test/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/Elena/XE96Test/SAMPLES /projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/ /projectnb/wax-es/Elena/XE96Test/Scripts/06_CollectMetrics/ [2025-08-21 15:17:12,665] multiqc [DEBUG ] Working dir : /projectnb/wax-es/Elena/XE96Test/Scripts/99_final_summary/XE96Test_multiqc_report [2025-08-21 15:17:12,665] multiqc [DEBUG ] Template : default [2025-08-21 15:17:12,665] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-21 15:17:12,665] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-21 15:17:12,666] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmput30ren4 [2025-08-21 15:17:12,936] multiqc [INFO ] Search path : /projectnb/wax-es/Elena/XE96Test/SAMPLES [2025-08-21 15:17:12,936] multiqc [INFO ] Search path : /projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC [2025-08-21 15:17:12,937] multiqc [INFO ] Search path : /projectnb/wax-es/Elena/XE96Test/Scripts/06_CollectMetrics [2025-08-21 15:17:13,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:13,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:13,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:13,605] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M27_SJ.out.tab [2025-08-21 15:17:15,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_marked_dup_metrics.txt [2025-08-21 15:17:15,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_marked_dup_metrics.txt [2025-08-21 15:17:15,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_marked_dup_metrics.txt [2025-08-21 15:17:15,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_marked_dup_metrics.txt [2025-08-21 15:17:15,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_marked_dup_metrics.txt [2025-08-21 15:17:15,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:15,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:15,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:15,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:15,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:15,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_hist.pdf [2025-08-21 15:17:15,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,547] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:15,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,513] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,513] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,513] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,514] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,514] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,514] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,514] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:16,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-21 15:17:17,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:17,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:17,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-21 15:17:17,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:17,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:17,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:17,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M25_SJ.out.tab [2025-08-21 15:17:19,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_marked_dup_metrics.txt [2025-08-21 15:17:19,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_marked_dup_metrics.txt [2025-08-21 15:17:19,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_marked_dup_metrics.txt [2025-08-21 15:17:19,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_marked_dup_metrics.txt [2025-08-21 15:17:19,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_marked_dup_metrics.txt [2025-08-21 15:17:19,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:19,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:19,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:19,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:19,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:19,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_hist.pdf [2025-08-21 15:17:19,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:19,676] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,644] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:20,662] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-21 15:17:21,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:21,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:21,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-21 15:17:21,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:21,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:21,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,732] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:21,738] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M12_SJ.out.tab [2025-08-21 15:17:23,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_marked_dup_metrics.txt [2025-08-21 15:17:23,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_marked_dup_metrics.txt [2025-08-21 15:17:23,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_marked_dup_metrics.txt [2025-08-21 15:17:23,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_marked_dup_metrics.txt [2025-08-21 15:17:23,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_marked_dup_metrics.txt [2025-08-21 15:17:23,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:23,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:23,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:23,604] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:23,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:23,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_hist.pdf [2025-08-21 15:17:23,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,719] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,719] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,720] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,720] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,720] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,720] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:23,738] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:24,685] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-21 15:17:25,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:25,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:25,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-21 15:17:25,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:25,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:25,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,718] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:25,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M10_SJ.out.tab [2025-08-21 15:17:27,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_marked_dup_metrics.txt [2025-08-21 15:17:27,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_marked_dup_metrics.txt [2025-08-21 15:17:27,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_marked_dup_metrics.txt [2025-08-21 15:17:27,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_marked_dup_metrics.txt [2025-08-21 15:17:27,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_marked_dup_metrics.txt [2025-08-21 15:17:27,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:27,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:27,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:27,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:27,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:27,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_hist.pdf [2025-08-21 15:17:27,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,646] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:27,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:28,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-21 15:17:29,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:29,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:29,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-21 15:17:29,592] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:29,595] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:29,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:29,740] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M50_SJ.out.tab [2025-08-21 15:17:31,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_marked_dup_metrics.txt [2025-08-21 15:17:31,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_marked_dup_metrics.txt [2025-08-21 15:17:31,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_marked_dup_metrics.txt [2025-08-21 15:17:31,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_marked_dup_metrics.txt [2025-08-21 15:17:31,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_marked_dup_metrics.txt [2025-08-21 15:17:31,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_hist.pdf [2025-08-21 15:17:31,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:31,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:31,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:31,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:31,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:31,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,771] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:31,791] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,747] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:32,766] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-21 15:17:33,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:33,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:33,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-21 15:17:33,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:33,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:33,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,804] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,804] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,811] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:33,842] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M28_SJ.out.tab [2025-08-21 15:17:35,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_marked_dup_metrics.txt [2025-08-21 15:17:35,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_marked_dup_metrics.txt [2025-08-21 15:17:35,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_marked_dup_metrics.txt [2025-08-21 15:17:35,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_marked_dup_metrics.txt [2025-08-21 15:17:35,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_marked_dup_metrics.txt [2025-08-21 15:17:35,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:35,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:35,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:35,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:35,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:35,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_hist.pdf [2025-08-21 15:17:35,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,695] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,695] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,696] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,696] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,696] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,696] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,696] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:35,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:36,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-21 15:17:37,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:37,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:37,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-21 15:17:37,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:37,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:37,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,958] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,965] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:37,999] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M15_SJ.out.tab [2025-08-21 15:17:39,705] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_marked_dup_metrics.txt [2025-08-21 15:17:39,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_marked_dup_metrics.txt [2025-08-21 15:17:39,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_marked_dup_metrics.txt [2025-08-21 15:17:39,710] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_marked_dup_metrics.txt [2025-08-21 15:17:39,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_marked_dup_metrics.txt [2025-08-21 15:17:39,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:39,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:39,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:39,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:39,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:39,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_hist.pdf [2025-08-21 15:17:39,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:39,879] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,848] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,849] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,849] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,849] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,849] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,849] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:40,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-21 15:17:41,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:41,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:41,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-21 15:17:41,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:41,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:41,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:41,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M13_SJ.out.tab [2025-08-21 15:17:43,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_marked_dup_metrics.txt [2025-08-21 15:17:43,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_marked_dup_metrics.txt [2025-08-21 15:17:43,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_marked_dup_metrics.txt [2025-08-21 15:17:43,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_marked_dup_metrics.txt [2025-08-21 15:17:43,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_marked_dup_metrics.txt [2025-08-21 15:17:43,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_hist.pdf [2025-08-21 15:17:43,935] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:43,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:43,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:43,940] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:43,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:44,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,070] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:44,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,044] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,045] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-21 15:17:45,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:45,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:45,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-21 15:17:46,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:46,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:46,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:46,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M23_SJ.out.tab [2025-08-21 15:17:47,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_marked_dup_metrics.txt [2025-08-21 15:17:47,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_marked_dup_metrics.txt [2025-08-21 15:17:47,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_marked_dup_metrics.txt [2025-08-21 15:17:47,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_marked_dup_metrics.txt [2025-08-21 15:17:47,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_marked_dup_metrics.txt [2025-08-21 15:17:47,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:47,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:47,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:47,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:47,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:47,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_hist.pdf [2025-08-21 15:17:47,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,879] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:47,899] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:48,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-21 15:17:49,779] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:49,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:49,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-21 15:17:49,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:49,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:49,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,883] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:49,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M53_SJ.out.tab [2025-08-21 15:17:51,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_marked_dup_metrics.txt [2025-08-21 15:17:51,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_marked_dup_metrics.txt [2025-08-21 15:17:51,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_marked_dup_metrics.txt [2025-08-21 15:17:51,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_marked_dup_metrics.txt [2025-08-21 15:17:51,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_marked_dup_metrics.txt [2025-08-21 15:17:51,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:51,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:51,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:51,697] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:51,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:51,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_hist.pdf [2025-08-21 15:17:51,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,789] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,789] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:51,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:52,792] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-21 15:17:53,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:53,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:53,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-21 15:17:53,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:53,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:53,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,824] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:53,851] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M51_SJ.out.tab [2025-08-21 15:17:55,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_marked_dup_metrics.txt [2025-08-21 15:17:55,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_marked_dup_metrics.txt [2025-08-21 15:17:55,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_marked_dup_metrics.txt [2025-08-21 15:17:55,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_marked_dup_metrics.txt [2025-08-21 15:17:55,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_marked_dup_metrics.txt [2025-08-21 15:17:55,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:55,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:55,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:55,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:55,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:55,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_hist.pdf [2025-08-21 15:17:55,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,408] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:55,427] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,383] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:56,402] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-21 15:17:57,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:57,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:57,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-21 15:17:57,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:17:57,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:17:57,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,527] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,527] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:57,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M49_SJ.out.tab [2025-08-21 15:17:59,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_marked_dup_metrics.txt [2025-08-21 15:17:59,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_marked_dup_metrics.txt [2025-08-21 15:17:59,314] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_marked_dup_metrics.txt [2025-08-21 15:17:59,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_marked_dup_metrics.txt [2025-08-21 15:17:59,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_marked_dup_metrics.txt [2025-08-21 15:17:59,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_hist.pdf [2025-08-21 15:17:59,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:17:59,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:17:59,350] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:17:59,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:17:59,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:17:59,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:17:59,465] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,431] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:00,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-21 15:18:01,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:18:01,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:18:01,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-21 15:18:01,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:18:01,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:18:01,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,519] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:01,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M26_SJ.out.tab [2025-08-21 15:18:03,342] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_marked_dup_metrics.txt [2025-08-21 15:18:03,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_marked_dup_metrics.txt [2025-08-21 15:18:03,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_marked_dup_metrics.txt [2025-08-21 15:18:03,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_marked_dup_metrics.txt [2025-08-21 15:18:03,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_marked_dup_metrics.txt [2025-08-21 15:18:03,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_hist.pdf [2025-08-21 15:18:03,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:03,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:03,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:03,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:03,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:03,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,505] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,505] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,506] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,506] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,506] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,506] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,506] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:03,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:04,532] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-21 15:18:05,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:05,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:05,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-21 15:18:05,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:18:05,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:18:05,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,588] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:05,619] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M14_SJ.out.tab [2025-08-21 15:18:07,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_marked_dup_metrics.txt [2025-08-21 15:18:07,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_marked_dup_metrics.txt [2025-08-21 15:18:07,296] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_marked_dup_metrics.txt [2025-08-21 15:18:07,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_marked_dup_metrics.txt [2025-08-21 15:18:07,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_marked_dup_metrics.txt [2025-08-21 15:18:07,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:07,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:07,343] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:07,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:07,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:07,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_hist.pdf [2025-08-21 15:18:07,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:07,458] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:08,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-21 15:18:09,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:09,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:09,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-21 15:18:09,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:18:09,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:18:09,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:09,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M24_SJ.out.tab [2025-08-21 15:18:11,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_marked_dup_metrics.txt [2025-08-21 15:18:11,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_marked_dup_metrics.txt [2025-08-21 15:18:11,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_marked_dup_metrics.txt [2025-08-21 15:18:11,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_marked_dup_metrics.txt [2025-08-21 15:18:11,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_marked_dup_metrics.txt [2025-08-21 15:18:11,144] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:11,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:11,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:11,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:11,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:11,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_hist.pdf [2025-08-21 15:18:11,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,279] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:11,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,281] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,281] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,281] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:12,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-21 15:18:13,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:13,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:13,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-21 15:18:13,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:18:13,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:18:13,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,413] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:13,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M52_SJ.out.tab [2025-08-21 15:18:15,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_marked_dup_metrics.txt [2025-08-21 15:18:15,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_marked_dup_metrics.txt [2025-08-21 15:18:15,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_marked_dup_metrics.txt [2025-08-21 15:18:15,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_marked_dup_metrics.txt [2025-08-21 15:18:15,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_marked_dup_metrics.txt [2025-08-21 15:18:15,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:15,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:15,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:15,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:15,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:15,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_hist.pdf [2025-08-21 15:18:15,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,391] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,391] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,391] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,391] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:15,409] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,395] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,395] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:16,414] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-21 15:18:17,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:17,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:17,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-21 15:18:17,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-21 15:18:17,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-21 15:18:17,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,549] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:17,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M11_SJ.out.tab [2025-08-21 15:18:19,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_marked_dup_metrics.txt [2025-08-21 15:18:19,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_marked_dup_metrics.txt [2025-08-21 15:18:19,264] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_marked_dup_metrics.txt [2025-08-21 15:18:19,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_marked_dup_metrics.txt [2025-08-21 15:18:19,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_marked_dup_metrics.txt [2025-08-21 15:18:19,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_hist.pdf [2025-08-21 15:18:19,308] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:19,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:19,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:19,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:19,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:19,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:19,435] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,431] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:20,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-21 15:18:21,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:21,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:21,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-21 15:18:21,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:21,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:21,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:21,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:21,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:21,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:21,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-21 15:18:21,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-21 15:18:21,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-21 15:18:21,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-21 15:18:21,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-21 15:18:21,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-21 15:18:21,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-21 15:18:21,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M49.o9596201 [2025-08-21 15:18:21,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M49.o9596201 [2025-08-21 15:18:21,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M49.o9596201 [2025-08-21 15:18:21,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M49.o9596201 [2025-08-21 15:18:21,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M49.o9596201 [2025-08-21 15:18:21,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M11.o9596176 [2025-08-21 15:18:21,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M11.o9596176 [2025-08-21 15:18:21,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M11.o9596176 [2025-08-21 15:18:21,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M11.o9596176 [2025-08-21 15:18:21,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M11.o9596176 [2025-08-21 15:18:21,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M53.o9596210 [2025-08-21 15:18:21,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M53.o9596210 [2025-08-21 15:18:21,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M53.o9596210 [2025-08-21 15:18:21,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M53.o9596210 [2025-08-21 15:18:21,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M53.o9596210 [2025-08-21 15:18:21,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M24.o9596192 [2025-08-21 15:18:21,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M24.o9596192 [2025-08-21 15:18:21,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M24.o9596192 [2025-08-21 15:18:21,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M24.o9596192 [2025-08-21 15:18:21,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M24.o9596192 [2025-08-21 15:18:21,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M15.o9596189 [2025-08-21 15:18:21,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M15.o9596189 [2025-08-21 15:18:21,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M15.o9596189 [2025-08-21 15:18:21,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M15.o9596189 [2025-08-21 15:18:21,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M15.o9596189 [2025-08-21 15:18:21,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M26.o9596195 [2025-08-21 15:18:21,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M26.o9596195 [2025-08-21 15:18:21,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M26.o9596195 [2025-08-21 15:18:21,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M26.o9596195 [2025-08-21 15:18:21,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M26.o9596195 [2025-08-21 15:18:21,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M10.o9596165 [2025-08-21 15:18:21,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M10.o9596165 [2025-08-21 15:18:21,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M10.o9596165 [2025-08-21 15:18:21,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M10.o9596165 [2025-08-21 15:18:21,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M10.o9596165 [2025-08-21 15:18:21,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M12.o9596178 [2025-08-21 15:18:21,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M12.o9596178 [2025-08-21 15:18:21,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M12.o9596178 [2025-08-21 15:18:21,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M12.o9596178 [2025-08-21 15:18:21,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M12.o9596178 [2025-08-21 15:18:21,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M23.o9596190 [2025-08-21 15:18:21,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M23.o9596190 [2025-08-21 15:18:21,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M23.o9596190 [2025-08-21 15:18:21,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M23.o9596190 [2025-08-21 15:18:21,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M23.o9596190 [2025-08-21 15:18:21,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M27.o9596197 [2025-08-21 15:18:21,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M27.o9596197 [2025-08-21 15:18:21,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M27.o9596197 [2025-08-21 15:18:21,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M27.o9596197 [2025-08-21 15:18:21,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M27.o9596197 [2025-08-21 15:18:21,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M14.o9596186 [2025-08-21 15:18:21,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M14.o9596186 [2025-08-21 15:18:21,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M14.o9596186 [2025-08-21 15:18:21,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M14.o9596186 [2025-08-21 15:18:21,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M14.o9596186 [2025-08-21 15:18:21,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M28.o9596199 [2025-08-21 15:18:21,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_XE96Test_G221_M28.o9596199 [2025-08-21 15:18:21,932] multiqc [DEBUG ] File ignored 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15:18:28,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:28,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:28,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:28,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-21 15:18:28,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-08-21 15:18:28,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-08-21 15:18:28,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-08-21 15:18:28,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:28,909] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:28,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-21 15:18:28,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-21 15:18:28,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-21 15:18:28,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M10.o9597938 [2025-08-21 15:18:28,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M10.o9597938 [2025-08-21 15:18:28,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M10.o9597938 [2025-08-21 15:18:28,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M10.o9597938 [2025-08-21 15:18:28,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M10.o9597938 [2025-08-21 15:18:29,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M15.o9597943 [2025-08-21 15:18:29,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M15.o9597943 [2025-08-21 15:18:29,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M15.o9597943 [2025-08-21 15:18:29,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M15.o9597943 [2025-08-21 15:18:29,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M15.o9597943 [2025-08-21 15:18:29,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M52.o9597953 [2025-08-21 15:18:29,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M52.o9597953 [2025-08-21 15:18:29,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M52.o9597953 [2025-08-21 15:18:29,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M52.o9597953 [2025-08-21 15:18:29,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M52.o9597953 [2025-08-21 15:18:29,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M11.o9597939 [2025-08-21 15:18:29,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M11.o9597939 [2025-08-21 15:18:29,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M11.o9597939 [2025-08-21 15:18:29,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M11.o9597939 [2025-08-21 15:18:29,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M11.o9597939 [2025-08-21 15:18:29,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M50.o9597951 [2025-08-21 15:18:29,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M50.o9597951 [2025-08-21 15:18:29,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M50.o9597951 [2025-08-21 15:18:29,133] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M50.o9597951 [2025-08-21 15:18:29,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M50.o9597951 [2025-08-21 15:18:29,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M26.o9597947 [2025-08-21 15:18:29,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M26.o9597947 [2025-08-21 15:18:29,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M26.o9597947 [2025-08-21 15:18:29,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M26.o9597947 [2025-08-21 15:18:29,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M26.o9597947 [2025-08-21 15:18:29,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M25.o9597946 [2025-08-21 15:18:29,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M25.o9597946 [2025-08-21 15:18:29,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M25.o9597946 [2025-08-21 15:18:29,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M25.o9597946 [2025-08-21 15:18:29,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M25.o9597946 [2025-08-21 15:18:29,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M24.o9597945 [2025-08-21 15:18:29,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M24.o9597945 [2025-08-21 15:18:29,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M24.o9597945 [2025-08-21 15:18:29,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M24.o9597945 [2025-08-21 15:18:29,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M24.o9597945 [2025-08-21 15:18:29,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M28.o9597949 [2025-08-21 15:18:29,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M28.o9597949 [2025-08-21 15:18:29,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M28.o9597949 [2025-08-21 15:18:29,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M28.o9597949 [2025-08-21 15:18:29,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M28.o9597949 [2025-08-21 15:18:29,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M51.o9597952 [2025-08-21 15:18:29,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M51.o9597952 [2025-08-21 15:18:29,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M51.o9597952 [2025-08-21 15:18:29,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M51.o9597952 [2025-08-21 15:18:29,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M51.o9597952 [2025-08-21 15:18:29,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M13.o9597941 [2025-08-21 15:18:29,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M13.o9597941 [2025-08-21 15:18:29,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M13.o9597941 [2025-08-21 15:18:29,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M13.o9597941 [2025-08-21 15:18:29,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M13.o9597941 [2025-08-21 15:18:29,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M49.o9597950 [2025-08-21 15:18:29,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M49.o9597950 [2025-08-21 15:18:29,456] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M49.o9597950 [2025-08-21 15:18:29,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M49.o9597950 [2025-08-21 15:18:29,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M49.o9597950 [2025-08-21 15:18:29,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M14.o9597942 [2025-08-21 15:18:29,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M14.o9597942 [2025-08-21 15:18:29,490] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M14.o9597942 [2025-08-21 15:18:29,490] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M14.o9597942 [2025-08-21 15:18:29,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M14.o9597942 [2025-08-21 15:18:29,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M27.o9597948 [2025-08-21 15:18:29,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M27.o9597948 [2025-08-21 15:18:29,530] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M27.o9597948 [2025-08-21 15:18:29,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M27.o9597948 [2025-08-21 15:18:29,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M27.o9597948 [2025-08-21 15:18:29,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M53.o9597954 [2025-08-21 15:18:29,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M53.o9597954 [2025-08-21 15:18:29,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M53.o9597954 [2025-08-21 15:18:29,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M53.o9597954 [2025-08-21 15:18:29,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M53.o9597954 [2025-08-21 15:18:29,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M12.o9597940 [2025-08-21 15:18:29,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M12.o9597940 [2025-08-21 15:18:29,633] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M12.o9597940 [2025-08-21 15:18:29,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M12.o9597940 [2025-08-21 15:18:29,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M12.o9597940 [2025-08-21 15:18:29,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M23.o9597944 [2025-08-21 15:18:29,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M23.o9597944 [2025-08-21 15:18:29,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M23.o9597944 [2025-08-21 15:18:29,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M23.o9597944 [2025-08-21 15:18:29,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_XE96Test_G221_M23.o9597944 [2025-08-21 15:18:29,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-21 15:18:29,697] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-21 15:18:29,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-21 15:18:29,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-21 15:18:29,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-21 15:18:29,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,782] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:29,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-21 15:18:30,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-21 15:18:30,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-21 15:18:30,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-21 15:18:30,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-21 15:18:30,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-21 15:18:30,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-21 15:18:30,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-21 15:18:30,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-21 15:18:30,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-21 15:18:30,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-21 15:18:33,211] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-21 15:18:33,221] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-21 15:18:33,225] multiqc [DEBUG ] No samples found: custom_content [2025-08-21 15:18:33,235] multiqc [DEBUG ] No samples found: ccs [2025-08-21 15:18:33,253] multiqc [DEBUG ] No samples found: ngsderive [2025-08-21 15:18:33,269] multiqc [DEBUG ] No samples found: purple [2025-08-21 15:18:33,276] multiqc [DEBUG ] No samples found: conpair [2025-08-21 15:18:33,298] multiqc [DEBUG ] No samples found: lima [2025-08-21 15:18:33,343] multiqc [DEBUG ] No samples found: peddy [2025-08-21 15:18:33,363] multiqc [DEBUG ] No samples found: somalier [2025-08-21 15:18:33,389] multiqc [DEBUG ] No samples found: methylQA [2025-08-21 15:18:33,435] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-21 15:18:33,435] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-21 15:18:33,435] multiqc [DEBUG ] No samples found: mosdepth [2025-08-21 15:18:33,445] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-21 15:18:33,461] multiqc [DEBUG ] No samples found: qualimap [2025-08-21 15:18:33,487] multiqc [DEBUG ] No samples found: preseq [2025-08-21 15:18:33,507] multiqc [DEBUG ] No samples found: quast [2025-08-21 15:18:33,528] multiqc [DEBUG ] No samples found: qorts [2025-08-21 15:18:33,548] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-21 15:18:33,576] multiqc [DEBUG ] No samples found: rockhopper [2025-08-21 15:18:33,601] multiqc [DEBUG ] No samples found: rsem [2025-08-21 15:18:33,669] multiqc.modules.rseqc.rseqc [INFO ] Found 17 infer_experiment reports [2025-08-21 15:18:33,697] multiqc [DEBUG ] No samples found: busco [2025-08-21 15:18:33,717] multiqc [DEBUG ] No samples found: bustools [2025-08-21 15:18:33,736] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-21 15:18:33,759] multiqc [DEBUG ] No samples found: gffcompare [2025-08-21 15:18:33,769] multiqc [DEBUG ] No samples found: disambiguate [2025-08-21 15:18:33,790] multiqc [DEBUG ] No samples found: supernova [2025-08-21 15:18:33,855] multiqc [DEBUG ] No samples found: deeptools [2025-08-21 15:18:33,872] multiqc [DEBUG ] No samples found: sargasso [2025-08-21 15:18:33,902] multiqc [DEBUG ] No samples found: verifybamid [2025-08-21 15:18:33,926] multiqc [DEBUG ] No samples found: mirtrace [2025-08-21 15:18:33,936] multiqc [DEBUG ] No samples found: happy [2025-08-21 15:18:33,955] multiqc [DEBUG ] No samples found: mirtop [2025-08-21 15:18:33,989] multiqc [DEBUG ] No samples found: sambamba [2025-08-21 15:18:34,002] multiqc [DEBUG ] No samples found: homer [2025-08-21 15:18:34,020] multiqc [DEBUG ] No samples found: hops [2025-08-21 15:18:34,041] multiqc [DEBUG ] No samples found: macs2 [2025-08-21 15:18:34,050] multiqc [DEBUG ] No samples found: theta2 [2025-08-21 15:18:34,070] multiqc [DEBUG ] No samples found: snpeff [2025-08-21 15:18:34,106] multiqc [DEBUG ] No samples found: gatk [2025-08-21 15:18:34,116] multiqc [DEBUG ] No samples found: htseq [2025-08-21 15:18:34,125] multiqc [DEBUG ] No samples found: bcftools [2025-08-21 15:18:34,146] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M27_sorted [2025-08-21 15:18:34,149] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M25_sorted [2025-08-21 15:18:34,152] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M12_sorted [2025-08-21 15:18:34,155] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M10_sorted [2025-08-21 15:18:34,158] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M50_sorted [2025-08-21 15:18:34,161] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M28_sorted [2025-08-21 15:18:34,163] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M15_sorted [2025-08-21 15:18:34,166] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M13_sorted [2025-08-21 15:18:34,169] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M23_sorted [2025-08-21 15:18:34,171] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M53_sorted [2025-08-21 15:18:34,174] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M51_sorted [2025-08-21 15:18:34,176] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M49_sorted [2025-08-21 15:18:34,179] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M26_sorted [2025-08-21 15:18:34,182] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M14_sorted [2025-08-21 15:18:34,184] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M24_sorted [2025-08-21 15:18:34,186] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M52_sorted [2025-08-21 15:18:34,187] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M11_sorted [2025-08-21 15:18:34,187] multiqc.modules.featureCounts.feature_counts [INFO ] Found 17 reports [2025-08-21 15:18:34,230] multiqc [DEBUG ] No samples found: fgbio [2025-08-21 15:18:34,467] multiqc [DEBUG ] No samples found: dragen [2025-08-21 15:18:34,482] multiqc [DEBUG ] No samples found: dedup [2025-08-21 15:18:34,504] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-21 15:18:34,710] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-21 15:18:35,113] multiqc [DEBUG ] No samples found: jcvi [2025-08-21 15:18:35,123] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-21 15:18:35,771] multiqc.modules.picard.picard [INFO ] Found 17 InsertSizeMetrics reports [2025-08-21 15:18:35,795] multiqc.modules.picard.picard [INFO ] Found 17 MarkDuplicates reports [2025-08-21 15:18:35,833] multiqc.modules.picard.picard [INFO ] Found 17 RnaSeqMetrics reports [2025-08-21 15:18:35,859] multiqc [DEBUG ] No samples found: vep [2025-08-21 15:18:35,882] multiqc [DEBUG ] No samples found: sentieon [2025-08-21 15:18:35,907] multiqc [DEBUG ] No samples found: prokka [2025-08-21 15:18:35,930] multiqc [DEBUG ] No samples found: qc3C [2025-08-21 15:18:35,954] multiqc [DEBUG ] No samples found: nanostat [2025-08-21 15:18:35,963] multiqc [DEBUG ] No samples found: samblaster [2025-08-21 15:18:36,012] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,015] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,019] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,023] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,025] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,029] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,031] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,034] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,036] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,038] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,041] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,043] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,046] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,048] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,049] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,052] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-21 15:18:36,057] multiqc.modules.samtools.samtools [INFO ] Found 52 flagstat reports [2025-08-21 15:18:36,074] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-21 15:18:36,080] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-21 15:18:36,087] multiqc [DEBUG ] No samples found: bamtools [2025-08-21 15:18:36,093] multiqc [DEBUG ] No samples found: jellyfish [2025-08-21 15:18:36,102] multiqc [DEBUG ] No samples found: vcftools [2025-08-21 15:18:36,107] multiqc [DEBUG ] No samples found: longranger [2025-08-21 15:18:36,145] multiqc [DEBUG ] No samples found: stacks [2025-08-21 15:18:36,160] multiqc [DEBUG ] No samples found: varscan2 [2025-08-21 15:18:36,207] multiqc [DEBUG ] No samples found: snippy [2025-08-21 15:18:36,252] multiqc [DEBUG ] No samples found: bbmap [2025-08-21 15:18:36,266] multiqc [DEBUG ] No samples found: bismark [2025-08-21 15:18:36,286] multiqc [DEBUG ] No samples found: biscuit [2025-08-21 15:18:36,312] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-21 15:18:36,331] multiqc [DEBUG ] No samples found: hicup [2025-08-21 15:18:36,364] multiqc [DEBUG ] No samples found: hicpro [2025-08-21 15:18:36,374] multiqc [DEBUG ] No samples found: salmon [2025-08-21 15:18:36,386] multiqc [DEBUG ] No samples found: kallisto [2025-08-21 15:18:36,411] multiqc [DEBUG ] No samples found: slamdunk [2025-08-21 15:18:38,209] multiqc.modules.star.star [INFO ] Found 17 reports and 17 gene count files [2025-08-21 15:18:38,231] multiqc [DEBUG ] No samples found: hisat2 [2025-08-21 15:18:38,255] multiqc [DEBUG ] No samples found: tophat [2025-08-21 15:18:38,285] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-21 15:18:38,300] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-21 15:18:38,319] multiqc [DEBUG ] No samples found: snpsplit [2025-08-21 15:18:38,343] multiqc [DEBUG ] No samples found: odgi [2025-08-21 15:18:38,352] multiqc [DEBUG ] No samples found: pangolin [2025-08-21 15:18:38,360] multiqc [DEBUG ] No samples found: kat [2025-08-21 15:18:38,366] multiqc [DEBUG ] No samples found: leehom [2025-08-21 15:18:38,392] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-21 15:18:38,399] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-21 15:18:38,418] multiqc [DEBUG ] No samples found: cutadapt [2025-08-21 15:18:38,425] multiqc [DEBUG ] No samples found: flexbar [2025-08-21 15:18:38,432] multiqc [DEBUG ] No samples found: kaiju [2025-08-21 15:18:38,443] multiqc [DEBUG ] No samples found: kraken [2025-08-21 15:18:38,448] multiqc [DEBUG ] No samples found: malt [2025-08-21 15:18:38,467] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-21 15:18:38,485] multiqc [DEBUG ] No samples found: sickle [2025-08-21 15:18:38,507] multiqc [DEBUG ] No samples found: skewer [2025-08-21 15:18:38,517] multiqc [DEBUG ] No samples found: sortmerna [2025-08-21 15:18:38,525] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-21 15:18:38,546] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-21 15:18:38,564] multiqc [DEBUG ] No samples found: afterqc [2025-08-21 15:18:38,611] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,631] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,651] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,674] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,698] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,721] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,738] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,754] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,781] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,802] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,820] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,836] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,862] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,886] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,910] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,937] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,954] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-21 15:18:38,955] multiqc.modules.fastp.fastp [INFO ] Found 17 reports [2025-08-21 15:18:43,196] multiqc.modules.fastqc.fastqc [INFO ] Found 34 reports [2025-08-21 15:18:43,198] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-21 15:18:45,806] multiqc [DEBUG ] No samples found: pychopper [2025-08-21 15:18:45,895] multiqc [DEBUG ] No samples found: pycoqc [2025-08-21 15:18:45,905] multiqc [DEBUG ] No samples found: minionqc [2025-08-21 15:18:45,931] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-21 15:18:45,953] multiqc [DEBUG ] No samples found: clusterflow [2025-08-21 15:18:45,970] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-21 15:18:45,999] multiqc [DEBUG ] No samples found: bclconvert [2025-08-21 15:18:46,024] multiqc [DEBUG ] No samples found: interop [2025-08-21 15:18:46,060] multiqc [DEBUG ] No samples found: ivar [2025-08-21 15:18:46,083] multiqc [DEBUG ] No samples found: flash [2025-08-21 15:18:46,093] multiqc [DEBUG ] No samples found: seqyclean [2025-08-21 15:18:46,101] multiqc [DEBUG ] No samples found: optitype [2025-08-21 15:18:46,201] multiqc [INFO ] Compressing plot data [2025-08-21 15:18:47,940] multiqc [INFO ] Report : multiqc_report.html [2025-08-21 15:18:47,940] multiqc [INFO ] Data : multiqc_data [2025-08-21 15:18:47,940] multiqc [DEBUG ] Moving data file from '/scratch/tmput30ren4/multiqc_data' to '/projectnb/wax-es/Elena/XE96Test/Scripts/99_final_summary/XE96Test_multiqc_report/multiqc_data' [2025-08-21 15:18:48,436] multiqc [INFO ] MultiQC complete [2025-08-21 15:18:48,436] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers