Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G221_M10_statistics_for_all_accepted_reads 18085922 0 2267176 0 0 0 0 0 18085922 0 100.0 nan 15818746 0 7909373 0 7909373 0 15818746 0 100.0 nan 15818746 0 0 0 0.0 nan 0 0 0 0 18085922 G221_M10_statistics_for_primary_reads 15818746 0 0 0 0 0 0 0 15818746 0 100.0 nan 15818746 0 7909373 0 7909373 0 15818746 0 100.0 nan 15818746 0 0 0 0.0 nan 0 0 0 0 15818746 G221_M10_statistics_for_primary_unique_reads 14712148 0 0 0 0 0 0 0 14712148 0 100.0 nan 14712148 0 7356074 0 7356074 0 14712148 0 100.0 nan 14712148 0 0 0 0.0 nan 0 0 0 0 14712148 G221_M11_statistics_for_all_accepted_reads 17511378 0 2147144 0 0 0 0 0 17511378 0 100.0 nan 15364234 0 7682117 0 7682117 0 15364234 0 100.0 nan 15364234 0 0 0 0.0 nan 0 0 0 0 17511378 G221_M11_statistics_for_primary_reads 15364234 0 0 0 0 0 0 0 15364234 0 100.0 nan 15364234 0 7682117 0 7682117 0 15364234 0 100.0 nan 15364234 0 0 0 0.0 nan 0 0 0 0 15364234 G221_M11_statistics_for_primary_unique_reads 14317508 0 0 0 0 0 0 0 14317508 0 100.0 nan 14317508 0 7158754 0 7158754 0 14317508 0 100.0 nan 14317508 0 0 0 0.0 nan 0 0 0 0 14317508 G221_M12_statistics_for_all_accepted_reads 20339448 0 2690784 0 0 0 0 0 20339448 0 100.0 nan 17648664 0 8824332 0 8824332 0 17648664 0 100.0 nan 17648664 0 0 0 0.0 nan 0 0 0 0 20339448 G221_M12_statistics_for_primary_reads 17648664 0 0 0 0 0 0 0 17648664 0 100.0 nan 17648664 0 8824332 0 8824332 0 17648664 0 100.0 nan 17648664 0 0 0 0.0 nan 0 0 0 0 17648664 G221_M12_statistics_for_primary_unique_reads 16360912 0 0 0 0 0 0 0 16360912 0 100.0 nan 16360912 0 8180456 0 8180456 0 16360912 0 100.0 nan 16360912 0 0 0 0.0 nan 0 0 0 0 16360912 G221_M13_statistics_for_all_accepted_reads 28364520 0 3826490 0 0 0 0 0 28364520 0 100.0 nan 24538030 0 12269015 0 12269015 0 24538030 0 100.0 nan 24538030 0 0 0 0.0 nan 0 0 0 0 28364520 G221_M13_statistics_for_primary_reads 24538030 0 0 0 0 0 0 0 24538030 0 100.0 nan 24538030 0 12269015 0 12269015 0 24538030 0 100.0 nan 24538030 0 0 0 0.0 nan 0 0 0 0 24538030 G221_M13_statistics_for_primary_unique_reads 22704722 0 0 0 0 0 0 0 22704722 0 100.0 nan 22704722 0 11352361 0 11352361 0 22704722 0 100.0 nan 22704722 0 0 0 0.0 nan 0 0 0 0 22704722 G221_M14_statistics_for_all_accepted_reads 14741358 0 1816012 0 0 0 0 0 14741358 0 100.0 nan 12925346 0 6462673 0 6462673 0 12925346 0 100.0 nan 12925346 0 0 0 0.0 nan 0 0 0 0 14741358 G221_M14_statistics_for_primary_reads 12925346 0 0 0 0 0 0 0 12925346 0 100.0 nan 12925346 0 6462673 0 6462673 0 12925346 0 100.0 nan 12925346 0 0 0 0.0 nan 0 0 0 0 12925346 G221_M14_statistics_for_primary_unique_reads 12051546 0 0 0 0 0 0 0 12051546 0 100.0 nan 12051546 0 6025773 0 6025773 0 12051546 0 100.0 nan 12051546 0 0 0 0.0 nan 0 0 0 0 12051546 G221_M15_statistics_for_all_accepted_reads 18965254 0 2105424 0 0 0 0 0 18965254 0 100.0 nan 16859830 0 8429915 0 8429915 0 16859830 0 100.0 nan 16859830 0 0 0 0.0 nan 0 0 0 0 18965254 G221_M15_statistics_for_primary_reads 16859830 0 0 0 0 0 0 0 16859830 0 100.0 nan 16859830 0 8429915 0 8429915 0 16859830 0 100.0 nan 16859830 0 0 0 0.0 nan 0 0 0 0 16859830 G221_M15_statistics_for_primary_unique_reads 15805768 0 0 0 0 0 0 0 15805768 0 100.0 nan 15805768 0 7902884 0 7902884 0 15805768 0 100.0 nan 15805768 0 0 0 0.0 nan 0 0 0 0 15805768 G221_M23_statistics_for_all_accepted_reads 15096652 0 1956988 0 0 0 0 0 15096652 0 100.0 nan 13139664 0 6569832 0 6569832 0 13139664 0 100.0 nan 13139664 0 0 0 0.0 nan 0 0 0 0 15096652 G221_M23_statistics_for_primary_reads 13139664 0 0 0 0 0 0 0 13139664 0 100.0 nan 13139664 0 6569832 0 6569832 0 13139664 0 100.0 nan 13139664 0 0 0 0.0 nan 0 0 0 0 13139664 G221_M23_statistics_for_primary_unique_reads 12164752 0 0 0 0 0 0 0 12164752 0 100.0 nan 12164752 0 6082376 0 6082376 0 12164752 0 100.0 nan 12164752 0 0 0 0.0 nan 0 0 0 0 12164752 G221_M24_statistics_for_all_accepted_reads 18150220 0 2870174 0 0 0 0 0 18150220 0 100.0 nan 15280046 0 7640023 0 7640023 0 15280046 0 100.0 nan 15280046 0 0 0 0.0 nan 0 0 0 0 18150220 G221_M24_statistics_for_primary_reads 15280046 0 0 0 0 0 0 0 15280046 0 100.0 nan 15280046 0 7640023 0 7640023 0 15280046 0 100.0 nan 15280046 0 0 0 0.0 nan 0 0 0 0 15280046 G221_M24_statistics_for_primary_unique_reads 13880198 0 0 0 0 0 0 0 13880198 0 100.0 nan 13880198 0 6940099 0 6940099 0 13880198 0 100.0 nan 13880198 0 0 0 0.0 nan 0 0 0 0 13880198 G221_M25_statistics_for_all_accepted_reads 26657224 0 3369944 0 0 0 0 0 26657224 0 100.0 nan 23287280 0 11643640 0 11643640 0 23287280 0 100.0 nan 23287280 0 0 0 0.0 nan 0 0 0 0 26657224 G221_M25_statistics_for_primary_reads 23287280 0 0 0 0 0 0 0 23287280 0 100.0 nan 23287280 0 11643640 0 11643640 0 23287280 0 100.0 nan 23287280 0 0 0 0.0 nan 0 0 0 0 23287280 G221_M25_statistics_for_primary_unique_reads 21603986 0 0 0 0 0 0 0 21603986 0 100.0 nan 21603986 0 10801993 0 10801993 0 21603986 0 100.0 nan 21603986 0 0 0 0.0 nan 0 0 0 0 21603986 G221_M26_statistics_for_all_accepted_reads 20272292 0 2666696 0 0 0 0 0 20272292 0 100.0 nan 17605596 0 8802798 0 8802798 0 17605596 0 100.0 nan 17605596 0 0 0 0.0 nan 0 0 0 0 20272292 G221_M26_statistics_for_primary_reads 17605596 0 0 0 0 0 0 0 17605596 0 100.0 nan 17605596 0 8802798 0 8802798 0 17605596 0 100.0 nan 17605596 0 0 0 0.0 nan 0 0 0 0 17605596 G221_M26_statistics_for_primary_unique_reads 16275076 0 0 0 0 0 0 0 16275076 0 100.0 nan 16275076 0 8137538 0 8137538 0 16275076 0 100.0 nan 16275076 0 0 0 0.0 nan 0 0 0 0 16275076 G221_M27_statistics_for_all_accepted_reads 22095140 0 2976852 0 0 0 0 0 22095140 0 100.0 nan 19118288 0 9559144 0 9559144 0 19118288 0 100.0 nan 19118288 0 0 0 0.0 nan 0 0 0 0 22095140 G221_M27_statistics_for_primary_reads 19118288 0 0 0 0 0 0 0 19118288 0 100.0 nan 19118288 0 9559144 0 9559144 0 19118288 0 100.0 nan 19118288 0 0 0 0.0 nan 0 0 0 0 19118288 G221_M27_statistics_for_primary_unique_reads 17660344 0 0 0 0 0 0 0 17660344 0 100.0 nan 17660344 0 8830172 0 8830172 0 17660344 0 100.0 nan 17660344 0 0 0 0.0 nan 0 0 0 0 17660344 G221_M28_statistics_for_all_accepted_reads 14931930 0 1960060 0 0 0 0 0 14931930 0 100.0 nan 12971870 0 6485935 0 6485935 0 12971870 0 100.0 nan 12971870 0 0 0 0.0 nan 0 0 0 0 14931930 G221_M28_statistics_for_primary_reads 12971870 0 0 0 0 0 0 0 12971870 0 100.0 nan 12971870 0 6485935 0 6485935 0 12971870 0 100.0 nan 12971870 0 0 0 0.0 nan 0 0 0 0 12971870 G221_M28_statistics_for_primary_unique_reads 12046964 0 0 0 0 0 0 0 12046964 0 100.0 nan 12046964 0 6023482 0 6023482 0 12046964 0 100.0 nan 12046964 0 0 0 0.0 nan 0 0 0 0 12046964 G221_M49_statistics_for_all_accepted_reads 24585312 0 2943408 0 0 0 0 0 24585312 0 100.0 nan 21641904 0 10820952 0 10820952 0 21641904 0 100.0 nan 21641904 0 0 0 0.0 nan 0 0 0 0 24585312 G221_M49_statistics_for_primary_reads 21641904 0 0 0 0 0 0 0 21641904 0 100.0 nan 21641904 0 10820952 0 10820952 0 21641904 0 100.0 nan 21641904 0 0 0 0.0 nan 0 0 0 0 21641904 G221_M49_statistics_for_primary_unique_reads 20111940 0 0 0 0 0 0 0 20111940 0 100.0 nan 20111940 0 10055970 0 10055970 0 20111940 0 100.0 nan 20111940 0 0 0 0.0 nan 0 0 0 0 20111940 G221_M50_statistics_for_all_accepted_reads 26363558 0 3220920 0 0 0 0 0 26363558 0 100.0 nan 23142638 0 11571319 0 11571319 0 23142638 0 100.0 nan 23142638 0 0 0 0.0 nan 0 0 0 0 26363558 G221_M50_statistics_for_primary_reads 23142638 0 0 0 0 0 0 0 23142638 0 100.0 nan 23142638 0 11571319 0 11571319 0 23142638 0 100.0 nan 23142638 0 0 0 0.0 nan 0 0 0 0 23142638 G221_M50_statistics_for_primary_unique_reads 21556748 0 0 0 0 0 0 0 21556748 0 100.0 nan 21556748 0 10778374 0 10778374 0 21556748 0 100.0 nan 21556748 0 0 0 0.0 nan 0 0 0 0 21556748 G221_M51_statistics_for_all_accepted_reads 7300104 0 993196 0 0 0 0 0 7300104 0 100.0 nan 6306908 0 3153454 0 3153454 0 6306908 0 100.0 nan 6306908 0 0 0 0.0 nan 0 0 0 0 7300104 G221_M51_statistics_for_primary_reads 6306908 0 0 0 0 0 0 0 6306908 0 100.0 nan 6306908 0 3153454 0 3153454 0 6306908 0 100.0 nan 6306908 0 0 0 0.0 nan 0 0 0 0 6306908 G221_M51_statistics_for_primary_unique_reads 5832100 0 0 0 0 0 0 0 5832100 0 100.0 nan 5832100 0 2916050 0 2916050 0 5832100 0 100.0 nan 5832100 0 0 0 0.0 nan 0 0 0 0 5832100 G221_M52_statistics_for_all_accepted_reads 15229914 0 2021512 0 0 0 0 0 15229914 0 100.0 nan 13208402 0 6604201 0 6604201 0 13208402 0 100.0 nan 13208402 0 0 0 0.0 nan 0 0 0 0 15229914 G221_M52_statistics_for_primary_reads 13208402 0 0 0 0 0 0 0 13208402 0 100.0 nan 13208402 0 6604201 0 6604201 0 13208402 0 100.0 nan 13208402 0 0 0 0.0 nan 0 0 0 0 13208402 G221_M52_statistics_for_primary_unique_reads 12261084 0 0 0 0 0 0 0 12261084 0 100.0 nan 12261084 0 6130542 0 6130542 0 12261084 0 100.0 nan 12261084 0 0 0 0.0 nan 0 0 0 0 12261084 G221_M53_statistics_for_all_accepted_reads 15884308 0 1946736 0 0 0 0 0 15884308 0 100.0 nan 13937572 0 6968786 0 6968786 0 13937572 0 100.0 nan 13937572 0 0 0 0.0 nan 0 0 0 0 15884308 G221_M53_statistics_for_primary_reads 13937572 0 0 0 0 0 0 0 13937572 0 100.0 nan 13937572 0 6968786 0 6968786 0 13937572 0 100.0 nan 13937572 0 0 0 0.0 nan 0 0 0 0 13937572 G221_M53_statistics_for_primary_unique_reads 12995586 0 0 0 0 0 0 0 12995586 0 100.0 nan 12995586 0 6497793 0 6497793 0 12995586 0 100.0 nan 12995586 0 0 0 0.0 nan 0 0 0 0 12995586 statistics_for_primary_unique_reads 14317508 0 0 0 0 0 0 0 14317508 0 100.0 nan 14317508 0 7158754 0 7158754 0 14317508 0 100.0 nan 14317508 0 0 0 0.0 nan 0 0 0 0 14317508