Module	Section	Sample Name	Source
RSeQC	infer_experiment	G221_M27_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/Read_Strandness/G221_M27_Read_Strandness.txt
RSeQC	infer_experiment	G221_M25_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/Read_Strandness/G221_M25_Read_Strandness.txt
RSeQC	infer_experiment	G221_M12_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/Read_Strandness/G221_M12_Read_Strandness.txt
RSeQC	infer_experiment	G221_M10_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/Read_Strandness/G221_M10_Read_Strandness.txt
RSeQC	infer_experiment	G221_M50_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/Read_Strandness/G221_M50_Read_Strandness.txt
RSeQC	infer_experiment	G221_M28_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/Read_Strandness/G221_M28_Read_Strandness.txt
RSeQC	infer_experiment	G221_M15_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/Read_Strandness/G221_M15_Read_Strandness.txt
RSeQC	infer_experiment	G221_M13_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/Read_Strandness/G221_M13_Read_Strandness.txt
RSeQC	infer_experiment	G221_M23_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/Read_Strandness/G221_M23_Read_Strandness.txt
RSeQC	infer_experiment	G221_M53_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/Read_Strandness/G221_M53_Read_Strandness.txt
RSeQC	infer_experiment	G221_M51_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/Read_Strandness/G221_M51_Read_Strandness.txt
RSeQC	infer_experiment	G221_M49_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/Read_Strandness/G221_M49_Read_Strandness.txt
RSeQC	infer_experiment	G221_M26_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/Read_Strandness/G221_M26_Read_Strandness.txt
RSeQC	infer_experiment	G221_M14_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/Read_Strandness/G221_M14_Read_Strandness.txt
RSeQC	infer_experiment	G221_M24_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/Read_Strandness/G221_M24_Read_Strandness.txt
RSeQC	infer_experiment	G221_M52_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/Read_Strandness/G221_M52_Read_Strandness.txt
RSeQC	infer_experiment	G221_M11_Read_Strandness	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/Read_Strandness/G221_M11_Read_Strandness.txt
featureCounts	all_sections	G221_M27_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M27_featureCounts.out.summary
featureCounts	all_sections	G221_M25_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M25_featureCounts.out.summary
featureCounts	all_sections	G221_M12_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M12_featureCounts.out.summary
featureCounts	all_sections	G221_M10_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M10_featureCounts.out.summary
featureCounts	all_sections	G221_M50_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M50_featureCounts.out.summary
featureCounts	all_sections	G221_M28_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M28_featureCounts.out.summary
featureCounts	all_sections	G221_M15_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M15_featureCounts.out.summary
featureCounts	all_sections	G221_M13_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M13_featureCounts.out.summary
featureCounts	all_sections	G221_M23_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M23_featureCounts.out.summary
featureCounts	all_sections	G221_M53_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M53_featureCounts.out.summary
featureCounts	all_sections	G221_M51_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M51_featureCounts.out.summary
featureCounts	all_sections	G221_M49_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M49_featureCounts.out.summary
featureCounts	all_sections	G221_M26_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M26_featureCounts.out.summary
featureCounts	all_sections	G221_M14_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M14_featureCounts.out.summary
featureCounts	all_sections	G221_M24_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M24_featureCounts.out.summary
featureCounts	all_sections	G221_M52_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M52_featureCounts.out.summary
featureCounts	all_sections	G221_M11_sorted	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M11_featureCounts.out.summary
Picard	InsertSizeMetrics	G221_M27_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/CollectInsertSizeMetrics/G221_M27_metrics
Picard	InsertSizeMetrics	G221_M25_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/CollectInsertSizeMetrics/G221_M25_metrics
Picard	InsertSizeMetrics	G221_M12_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/CollectInsertSizeMetrics/G221_M12_metrics
Picard	InsertSizeMetrics	G221_M10_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/CollectInsertSizeMetrics/G221_M10_metrics
Picard	InsertSizeMetrics	G221_M50_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/CollectInsertSizeMetrics/G221_M50_metrics
Picard	InsertSizeMetrics	G221_M28_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/CollectInsertSizeMetrics/G221_M28_metrics
Picard	InsertSizeMetrics	G221_M15_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/CollectInsertSizeMetrics/G221_M15_metrics
Picard	InsertSizeMetrics	G221_M13_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/CollectInsertSizeMetrics/G221_M13_metrics
Picard	InsertSizeMetrics	G221_M23_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/CollectInsertSizeMetrics/G221_M23_metrics
Picard	InsertSizeMetrics	G221_M53_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/CollectInsertSizeMetrics/G221_M53_metrics
Picard	InsertSizeMetrics	G221_M51_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/CollectInsertSizeMetrics/G221_M51_metrics
Picard	InsertSizeMetrics	G221_M49_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/CollectInsertSizeMetrics/G221_M49_metrics
Picard	InsertSizeMetrics	G221_M26_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/CollectInsertSizeMetrics/G221_M26_metrics
Picard	InsertSizeMetrics	G221_M14_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/CollectInsertSizeMetrics/G221_M14_metrics
Picard	InsertSizeMetrics	G221_M24_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/CollectInsertSizeMetrics/G221_M24_metrics
Picard	InsertSizeMetrics	G221_M52_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/CollectInsertSizeMetrics/G221_M52_metrics
Picard	InsertSizeMetrics	G221_M11_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/CollectInsertSizeMetrics/G221_M11_metrics
Picard	DuplicationMetrics	G221_M27_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/CollectDuplicates/G221_M27_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M25_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/CollectDuplicates/G221_M25_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M12_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/CollectDuplicates/G221_M12_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M10_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/CollectDuplicates/G221_M10_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M50_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/CollectDuplicates/G221_M50_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M28_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/CollectDuplicates/G221_M28_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M15_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/CollectDuplicates/G221_M15_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M13_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/CollectDuplicates/G221_M13_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M23_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/CollectDuplicates/G221_M23_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M53_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/CollectDuplicates/G221_M53_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M51_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/CollectDuplicates/G221_M51_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M49_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/CollectDuplicates/G221_M49_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M26_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/CollectDuplicates/G221_M26_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M14_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/CollectDuplicates/G221_M14_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M24_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/CollectDuplicates/G221_M24_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M52_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/CollectDuplicates/G221_M52_marked_dup_metrics.txt
Picard	DuplicationMetrics	G221_M11_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/CollectDuplicates/G221_M11_marked_dup_metrics.txt
Picard	RnaSeqMetrics	G221_M27_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/CollectRnaSeqMetrics/G221_M27_metrics
Picard	RnaSeqMetrics	G221_M25_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/CollectRnaSeqMetrics/G221_M25_metrics
Picard	RnaSeqMetrics	G221_M12_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/CollectRnaSeqMetrics/G221_M12_metrics
Picard	RnaSeqMetrics	G221_M10_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/CollectRnaSeqMetrics/G221_M10_metrics
Picard	RnaSeqMetrics	G221_M50_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/CollectRnaSeqMetrics/G221_M50_metrics
Picard	RnaSeqMetrics	G221_M28_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/CollectRnaSeqMetrics/G221_M28_metrics
Picard	RnaSeqMetrics	G221_M15_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/CollectRnaSeqMetrics/G221_M15_metrics
Picard	RnaSeqMetrics	G221_M13_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/CollectRnaSeqMetrics/G221_M13_metrics
Picard	RnaSeqMetrics	G221_M23_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/CollectRnaSeqMetrics/G221_M23_metrics
Picard	RnaSeqMetrics	G221_M53_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/CollectRnaSeqMetrics/G221_M53_metrics
Picard	RnaSeqMetrics	G221_M51_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/CollectRnaSeqMetrics/G221_M51_metrics
Picard	RnaSeqMetrics	G221_M49_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/CollectRnaSeqMetrics/G221_M49_metrics
Picard	RnaSeqMetrics	G221_M26_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/CollectRnaSeqMetrics/G221_M26_metrics
Picard	RnaSeqMetrics	G221_M14_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/CollectRnaSeqMetrics/G221_M14_metrics
Picard	RnaSeqMetrics	G221_M24_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/CollectRnaSeqMetrics/G221_M24_metrics
Picard	RnaSeqMetrics	G221_M52_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/CollectRnaSeqMetrics/G221_M52_metrics
Picard	RnaSeqMetrics	G221_M11_primary_unique	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/CollectRnaSeqMetrics/G221_M11_metrics
Samtools	flagstat	G221_M27_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/aligner/G221_M27_statistics_for_all_accepted_reads.txt
Samtools	flagstat	statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M27_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/aligner/G221_M27_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M27_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/aligner/G221_M27_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M25_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/aligner/G221_M25_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M25_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/aligner/G221_M25_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M25_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/aligner/G221_M25_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M12_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/aligner/G221_M12_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M12_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/aligner/G221_M12_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M12_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/aligner/G221_M12_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M10_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/aligner/G221_M10_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M10_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/aligner/G221_M10_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M10_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/aligner/G221_M10_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M50_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/aligner/G221_M50_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M50_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/aligner/G221_M50_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M50_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/aligner/G221_M50_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M28_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/aligner/G221_M28_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M28_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/aligner/G221_M28_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M28_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/aligner/G221_M28_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M15_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/aligner/G221_M15_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M15_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/aligner/G221_M15_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M15_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/aligner/G221_M15_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M13_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/aligner/G221_M13_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M13_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/aligner/G221_M13_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M13_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/aligner/G221_M13_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M23_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/aligner/G221_M23_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M23_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/aligner/G221_M23_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M23_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/aligner/G221_M23_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M53_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/aligner/G221_M53_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M53_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/aligner/G221_M53_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M53_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/aligner/G221_M53_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M51_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/aligner/G221_M51_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M51_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/aligner/G221_M51_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M51_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/aligner/G221_M51_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M49_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/aligner/G221_M49_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M49_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/aligner/G221_M49_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M49_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/aligner/G221_M49_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M26_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/aligner/G221_M26_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M26_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/aligner/G221_M26_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M26_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/aligner/G221_M26_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M14_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/aligner/G221_M14_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M14_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/aligner/G221_M14_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M14_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/aligner/G221_M14_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M24_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/aligner/G221_M24_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M24_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/aligner/G221_M24_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M24_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/aligner/G221_M24_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M52_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/aligner/G221_M52_statistics_for_primary_reads.txt
Samtools	flagstat	G221_M52_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/aligner/G221_M52_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M52_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/aligner/G221_M52_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M11_statistics_for_primary_unique_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/G221_M11_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G221_M11_statistics_for_all_accepted_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/G221_M11_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G221_M11_statistics_for_primary_reads	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/G221_M11_statistics_for_primary_reads.txt
STAR	SummaryLog	G221_M27_G221_M27	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/aligner/G221_M27_G221_M27_Log.final.out
STAR	SummaryLog	G221_M25_G221_M25	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/aligner/G221_M25_G221_M25_Log.final.out
STAR	SummaryLog	G221_M12_G221_M12	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/aligner/G221_M12_G221_M12_Log.final.out
STAR	SummaryLog	G221_M10_G221_M10	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/aligner/G221_M10_G221_M10_Log.final.out
STAR	SummaryLog	G221_M50_G221_M50	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/aligner/G221_M50_G221_M50_Log.final.out
STAR	SummaryLog	G221_M28_G221_M28	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/aligner/G221_M28_G221_M28_Log.final.out
STAR	SummaryLog	G221_M15_G221_M15	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/aligner/G221_M15_G221_M15_Log.final.out
STAR	SummaryLog	G221_M13_G221_M13	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/aligner/G221_M13_G221_M13_Log.final.out
STAR	SummaryLog	G221_M23_G221_M23	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/aligner/G221_M23_G221_M23_Log.final.out
STAR	SummaryLog	G221_M53_G221_M53	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/aligner/G221_M53_G221_M53_Log.final.out
STAR	SummaryLog	G221_M51_G221_M51	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/aligner/G221_M51_G221_M51_Log.final.out
STAR	SummaryLog	G221_M49_G221_M49	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/aligner/G221_M49_G221_M49_Log.final.out
STAR	SummaryLog	G221_M26_G221_M26	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/aligner/G221_M26_G221_M26_Log.final.out
STAR	SummaryLog	G221_M14_G221_M14	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/aligner/G221_M14_G221_M14_Log.final.out
STAR	SummaryLog	G221_M24_G221_M24	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/aligner/G221_M24_G221_M24_Log.final.out
STAR	SummaryLog	G221_M52_G221_M52	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/aligner/G221_M52_G221_M52_Log.final.out
STAR	SummaryLog	G221_M11_G221_M11	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/G221_M11_G221_M11_Log.final.out
STAR	ReadsPerGene	G221_M27	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M27/aligner/G221_M27_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M25	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M25/aligner/G221_M25_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M12	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M12/aligner/G221_M12_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M10	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M10/aligner/G221_M10_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M50	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M50/aligner/G221_M50_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M28	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M28/aligner/G221_M28_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M15	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M15/aligner/G221_M15_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M13	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M13/aligner/G221_M13_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M23	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M23/aligner/G221_M23_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M53	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M53/aligner/G221_M53_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M51	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M51/aligner/G221_M51_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M49	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M49/aligner/G221_M49_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M26	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M26/aligner/G221_M26_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M14	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M14/aligner/G221_M14_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M24	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M24/aligner/G221_M24_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M52	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M52/aligner/G221_M52_ReadsPerGene.out.tab
STAR	ReadsPerGene	G221_M11	/projectnb/wax-es/Elena/XE96Test/SAMPLES/G221_M11/aligner/G221_M11_ReadsPerGene.out.tab
fastp	all_sections	G221_M27_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M27_FASTP/fastp.json
fastp	all_sections	G221_M25_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M25_FASTP/fastp.json
fastp	all_sections	G221_M24_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M24_FASTP/fastp.json
fastp	all_sections	G221_M52_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M52_FASTP/fastp.json
fastp	all_sections	G221_M13_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M13_FASTP/fastp.json
fastp	all_sections	G221_M28_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M28_FASTP/fastp.json
fastp	all_sections	G221_M51_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M51_FASTP/fastp.json
fastp	all_sections	G221_M50_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M50_FASTP/fastp.json
fastp	all_sections	G221_M26_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M26_FASTP/fastp.json
fastp	all_sections	G221_M11_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M11_FASTP/fastp.json
fastp	all_sections	G221_M53_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M53_FASTP/fastp.json
fastp	all_sections	G221_M23_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M23_FASTP/fastp.json
fastp	all_sections	G221_M14_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M14_FASTP/fastp.json
fastp	all_sections	G221_M10_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M10_FASTP/fastp.json
fastp	all_sections	G221_M12_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M12_FASTP/fastp.json
fastp	all_sections	G221_M49_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M49_FASTP/fastp.json
fastp	all_sections	G221_M15_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M15_FASTP/fastp.json
FastQC	all_sections	G221_M14_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M14_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M24_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M24_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M10_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M10_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M25_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M25_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M11_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M11_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M25_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M25_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M52_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M52_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M26_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M26_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M15_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M15_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M49_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M49_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M12_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M12_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M50_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M50_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M28_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M28_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M24_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M24_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M23_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M23_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M27_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M27_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M51_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M51_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M11_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M11_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M50_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M50_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M51_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M51_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M53_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M53_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M49_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M49_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M23_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M23_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M28_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M28_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M26_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M26_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M15_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M15_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M52_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M52_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M53_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M53_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M10_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M10_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M14_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M14_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M27_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M27_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M13_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M13_FASTQC_R2/fastqc_data.txt
FastQC	all_sections	G221_M13_CKDL240003768-1A_22JKTWLT3_L7_1	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M13_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	G221_M12_CKDL240003768-1A_22JKTWLT3_L7_2	/projectnb/wax-es/Elena/XE96Test/Scripts/03_FASTQC/Job_Summary/G221_M12_FASTQC_R2/fastqc_data.txt