[2024-12-10 11:08:20,993] multiqc [DEBUG ] This is MultiQC v1.11 [2024-12-10 11:08:20,994] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-12-10 11:08:20,994] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-12-10 11:08:20,994] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-12-10 11:08:20,996] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/test_rnaseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-12-10 11:08:20,996] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-12-10 11:08:20,997] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-12-10 11:08:20,997] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/test_rnaseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/test_rnaseq/SAMPLES /projectnb2/wax-dk/max/test_rnaseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/test_rnaseq/Scripts/06_CollectMetrics/ [2024-12-10 11:08:21,512] multiqc [WARNING] MultiQC Version v1.25.2 now available! [2024-12-10 11:08:21,513] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/test_rnaseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/test_rnaseq/SAMPLES /projectnb2/wax-dk/max/test_rnaseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/test_rnaseq/Scripts/06_CollectMetrics/ [2024-12-10 11:08:21,513] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/test_rnaseq/Scripts/99_final_summary/test_rnaseq_multiqc_report [2024-12-10 11:08:21,513] multiqc [DEBUG ] Template : default [2024-12-10 11:08:21,513] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-12-10 11:08:21,514] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-12-10 11:08:21,514] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp1_ujpne1 [2024-12-10 11:08:21,952] multiqc [INFO ] Search path : /projectnb/wax-dk/max/test_rnaseq/SAMPLES [2024-12-10 11:08:21,952] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/test_rnaseq/Scripts/03_FASTQC [2024-12-10 11:08:21,952] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/test_rnaseq/Scripts/06_CollectMetrics [2024-12-10 11:08:22,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-12-10 11:08:22,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-12-10 11:08:22,145] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:22,154] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-12-10 11:08:24,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-12-10 11:08:24,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-12-10 11:08:24,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-12-10 11:08:24,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:24,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:24,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:24,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:24,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:24,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_hist.pdf [2024-12-10 11:08:24,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:24,484] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,395] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,395] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,396] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,396] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,396] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,396] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,396] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:25,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-12-10 11:08:26,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:26,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:26,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_metrics [2024-12-10 11:08:26,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-12-10 11:08:26,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-12-10 11:08:26,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:26,371] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-12-10 11:08:28,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-12-10 11:08:28,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-12-10 11:08:28,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-12-10 11:08:28,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-12-10 11:08:28,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-12-10 11:08:28,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:28,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:28,692] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:28,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:28,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:28,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_hist.pdf [2024-12-10 11:08:28,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,741] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,741] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:28,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,629] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:29,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-12-10 11:08:30,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:30,481] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:30,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_metrics [2024-12-10 11:08:30,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-12-10 11:08:30,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-12-10 11:08:30,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,649] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:30,650] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-12-10 11:08:32,911] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-12-10 11:08:32,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-12-10 11:08:32,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-12-10 11:08:32,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_hist.pdf [2024-12-10 11:08:32,927] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:32,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:32,929] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:32,929] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:32,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:32,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:32,997] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,019] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:33,923] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-12-10 11:08:34,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:34,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:34,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_metrics [2024-12-10 11:08:34,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-12-10 11:08:34,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-12-10 11:08:34,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:34,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-12-10 11:08:37,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-12-10 11:08:37,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-12-10 11:08:37,256] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-12-10 11:08:37,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-12-10 11:08:37,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-12-10 11:08:37,274] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:37,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:37,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:37,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:37,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:37,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_hist.pdf [2024-12-10 11:08:37,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,344] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:37,366] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,230] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,230] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,230] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,230] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:38,251] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-12-10 11:08:39,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:39,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:39,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_metrics [2024-12-10 11:08:39,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-12-10 11:08:39,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-12-10 11:08:39,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:39,222] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-12-10 11:08:41,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-12-10 11:08:41,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-12-10 11:08:41,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-12-10 11:08:41,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_hist.pdf [2024-12-10 11:08:41,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:41,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:41,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:41,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:41,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:41,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,621] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:41,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,514] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:42,542] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-12-10 11:08:43,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:43,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:43,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_metrics [2024-12-10 11:08:43,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:43,413] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:43,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:43,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:43,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:43,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:43,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-10 11:08:43,450] multiqc [DEBUG ] File ignored by 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because it exceeded search pattern filesize limit: fastqc_report.html [2024-12-10 11:08:45,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2024-12-10 11:08:45,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:45,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:45,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:45,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:45,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-10 11:08:45,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-10 11:08:45,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-10 11:08:45,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-10 11:08:45,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:45,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:45,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-10 11:08:45,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-10 11:08:45,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-10 11:08:45,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M04.o1470604 [2024-12-10 11:08:45,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M04.o1470604 [2024-12-10 11:08:45,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M04.o1470604 [2024-12-10 11:08:45,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M04.o1470604 [2024-12-10 11:08:45,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M04.o1470604 [2024-12-10 11:08:45,424] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M03.o1470603 [2024-12-10 11:08:45,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M03.o1470603 [2024-12-10 11:08:45,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M03.o1470603 [2024-12-10 11:08:45,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M03.o1470603 [2024-12-10 11:08:45,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M03.o1470603 [2024-12-10 11:08:45,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M01.o1470601 [2024-12-10 11:08:45,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M01.o1470601 [2024-12-10 11:08:45,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M01.o1470601 [2024-12-10 11:08:45,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M01.o1470601 [2024-12-10 11:08:45,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M01.o1470601 [2024-12-10 11:08:45,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M05.o1470605 [2024-12-10 11:08:45,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M05.o1470605 [2024-12-10 11:08:45,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M05.o1470605 [2024-12-10 11:08:45,469] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M05.o1470605 [2024-12-10 11:08:45,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M05.o1470605 [2024-12-10 11:08:45,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M02.o1470602 [2024-12-10 11:08:45,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M02.o1470602 [2024-12-10 11:08:45,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M02.o1470602 [2024-12-10 11:08:45,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M02.o1470602 [2024-12-10 11:08:45,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_test_rnaseq_G238_M02.o1470602 [2024-12-10 11:08:45,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-12-10 11:08:45,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,574] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:45,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-12-10 11:08:46,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-10 11:08:46,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-10 11:08:46,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-10 11:08:46,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-10 11:08:46,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-10 11:08:46,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-10 11:08:46,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-10 11:08:46,339] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-10 11:08:46,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-10 11:08:46,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-10 11:08:49,681] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-12-10 11:08:49,702] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-12-10 11:08:49,705] multiqc [DEBUG ] No samples found: custom_content [2024-12-10 11:08:49,715] multiqc [DEBUG ] No samples found: ccs [2024-12-10 11:08:49,735] multiqc [DEBUG ] No samples found: ngsderive [2024-12-10 11:08:49,744] multiqc [DEBUG ] No samples found: purple [2024-12-10 11:08:49,751] multiqc [DEBUG ] No samples found: conpair [2024-12-10 11:08:49,783] multiqc [DEBUG ] No samples found: lima [2024-12-10 11:08:49,814] multiqc [DEBUG ] No samples found: peddy [2024-12-10 11:08:49,824] multiqc [DEBUG ] No samples found: somalier [2024-12-10 11:08:49,851] multiqc [DEBUG ] No samples found: methylQA [2024-12-10 11:08:49,886] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-12-10 11:08:49,886] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-12-10 11:08:49,886] multiqc [DEBUG ] No samples found: mosdepth [2024-12-10 11:08:49,895] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-12-10 11:08:49,928] multiqc [DEBUG ] No samples found: qualimap [2024-12-10 11:08:49,955] multiqc [DEBUG ] No samples found: preseq [2024-12-10 11:08:49,980] multiqc [DEBUG ] No samples found: quast [2024-12-10 11:08:49,999] multiqc [DEBUG ] No samples found: qorts [2024-12-10 11:08:50,042] multiqc [DEBUG ] No samples found: rna_seqc [2024-12-10 11:08:50,065] multiqc [DEBUG ] No samples found: rockhopper [2024-12-10 11:08:50,104] multiqc [DEBUG ] No samples found: rsem [2024-12-10 11:08:50,163] multiqc.modules.rseqc.rseqc [INFO ] Found 5 infer_experiment reports [2024-12-10 11:08:50,190] multiqc [DEBUG ] No samples found: busco [2024-12-10 11:08:50,199] multiqc [DEBUG ] No samples found: bustools [2024-12-10 11:08:50,237] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-12-10 11:08:50,272] multiqc [DEBUG ] No samples found: gffcompare [2024-12-10 11:08:50,281] multiqc [DEBUG ] No samples found: disambiguate [2024-12-10 11:08:50,312] multiqc [DEBUG ] No samples found: supernova [2024-12-10 11:08:50,405] multiqc [DEBUG ] No samples found: deeptools [2024-12-10 11:08:50,439] multiqc [DEBUG ] No samples found: sargasso [2024-12-10 11:08:50,464] multiqc [DEBUG ] No samples found: verifybamid [2024-12-10 11:08:50,500] multiqc [DEBUG ] No samples found: mirtrace [2024-12-10 11:08:50,510] multiqc [DEBUG ] No samples found: happy [2024-12-10 11:08:50,518] multiqc [DEBUG ] No samples found: mirtop [2024-12-10 11:08:50,544] multiqc [DEBUG ] No samples found: sambamba [2024-12-10 11:08:50,557] multiqc [DEBUG ] No samples found: homer [2024-12-10 11:08:50,595] multiqc [DEBUG ] No samples found: hops [2024-12-10 11:08:50,606] multiqc [DEBUG ] No samples found: macs2 [2024-12-10 11:08:50,614] multiqc [DEBUG ] No samples found: theta2 [2024-12-10 11:08:50,639] multiqc [DEBUG ] No samples found: snpeff [2024-12-10 11:08:50,675] multiqc [DEBUG ] No samples found: gatk [2024-12-10 11:08:50,684] multiqc [DEBUG ] No samples found: htseq [2024-12-10 11:08:50,699] multiqc [DEBUG ] No samples found: bcftools [2024-12-10 11:08:50,733] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M03_sorted [2024-12-10 11:08:50,734] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M02_sorted [2024-12-10 11:08:50,735] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M05_sorted [2024-12-10 11:08:50,737] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M01_sorted [2024-12-10 11:08:50,738] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M04_sorted [2024-12-10 11:08:50,738] multiqc.modules.featureCounts.feature_counts [INFO ] Found 5 reports [2024-12-10 11:08:50,790] multiqc [DEBUG ] No samples found: fgbio [2024-12-10 11:08:50,884] multiqc [DEBUG ] No samples found: dragen [2024-12-10 11:08:50,910] multiqc [DEBUG ] No samples found: dedup [2024-12-10 11:08:50,932] multiqc [DEBUG ] No samples found: damageprofiler [2024-12-10 11:08:51,135] multiqc [DEBUG ] No samples found: biobambam2 [2024-12-10 11:08:51,155] multiqc [DEBUG ] No samples found: jcvi [2024-12-10 11:08:51,164] multiqc [DEBUG ] No samples found: mtnucratio [2024-12-10 11:08:51,220] multiqc.modules.picard.picard [INFO ] Found 5 InsertSizeMetrics reports [2024-12-10 11:08:51,222] multiqc.modules.picard.picard [INFO ] Found 5 MarkDuplicates reports [2024-12-10 11:08:51,228] multiqc.modules.picard.picard [INFO ] Found 5 RnaSeqMetrics reports [2024-12-10 11:08:51,256] multiqc [DEBUG ] No samples found: vep [2024-12-10 11:08:51,294] multiqc [DEBUG ] No samples found: sentieon [2024-12-10 11:08:51,305] multiqc [DEBUG ] No samples found: prokka [2024-12-10 11:08:51,324] multiqc [DEBUG ] No samples found: qc3C [2024-12-10 11:08:51,348] multiqc [DEBUG ] No samples found: nanostat [2024-12-10 11:08:51,357] multiqc [DEBUG ] No samples found: samblaster [2024-12-10 11:08:51,432] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-10 11:08:51,435] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-10 11:08:51,438] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-10 11:08:51,439] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-10 11:08:51,443] multiqc.modules.samtools.samtools [INFO ] Found 16 flagstat reports [2024-12-10 11:08:51,473] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-12-10 11:08:51,486] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-12-10 11:08:51,493] multiqc [DEBUG ] No samples found: bamtools [2024-12-10 11:08:51,499] multiqc [DEBUG ] No samples found: jellyfish [2024-12-10 11:08:51,508] multiqc [DEBUG ] No samples found: vcftools [2024-12-10 11:08:51,514] multiqc [DEBUG ] No samples found: longranger [2024-12-10 11:08:51,542] multiqc [DEBUG ] No samples found: stacks [2024-12-10 11:08:51,552] multiqc [DEBUG ] No samples found: varscan2 [2024-12-10 11:08:51,571] multiqc [DEBUG ] No samples found: snippy [2024-12-10 11:08:51,636] multiqc [DEBUG ] No samples found: bbmap [2024-12-10 11:08:51,665] multiqc [DEBUG ] No samples found: bismark [2024-12-10 11:08:51,700] multiqc [DEBUG ] No samples found: biscuit [2024-12-10 11:08:51,710] multiqc [DEBUG ] No samples found: hicexplorer [2024-12-10 11:08:51,736] multiqc [DEBUG ] No samples found: hicup [2024-12-10 11:08:51,787] multiqc [DEBUG ] No samples found: hicpro [2024-12-10 11:08:51,796] multiqc [DEBUG ] No samples found: salmon [2024-12-10 11:08:51,804] multiqc [DEBUG ] No samples found: kallisto [2024-12-10 11:08:51,844] multiqc [DEBUG ] No samples found: slamdunk [2024-12-10 11:08:52,356] multiqc.modules.star.star [INFO ] Found 5 reports and 5 gene count files [2024-12-10 11:08:52,363] multiqc [DEBUG ] No samples found: hisat2 [2024-12-10 11:08:52,393] multiqc [DEBUG ] No samples found: tophat [2024-12-10 11:08:52,432] multiqc [DEBUG ] No samples found: bowtie2 [2024-12-10 11:08:52,442] multiqc [DEBUG ] No samples found: bowtie1 [2024-12-10 11:08:52,478] multiqc [DEBUG ] No samples found: snpsplit [2024-12-10 11:08:52,509] multiqc [DEBUG ] No samples found: odgi [2024-12-10 11:08:52,519] multiqc [DEBUG ] No samples found: pangolin [2024-12-10 11:08:52,526] multiqc [DEBUG ] No samples found: kat [2024-12-10 11:08:52,532] multiqc [DEBUG ] No samples found: leehom [2024-12-10 11:08:52,567] multiqc [DEBUG ] No samples found: adapterRemoval [2024-12-10 11:08:52,576] multiqc [DEBUG ] No samples found: clipandmerge [2024-12-10 11:08:52,591] multiqc [DEBUG ] No samples found: cutadapt [2024-12-10 11:08:52,600] multiqc [DEBUG ] No samples found: flexbar [2024-12-10 11:08:52,608] multiqc [DEBUG ] No samples found: kaiju [2024-12-10 11:08:52,619] multiqc [DEBUG ] No samples found: kraken [2024-12-10 11:08:52,628] multiqc [DEBUG ] No samples found: malt [2024-12-10 11:08:52,654] multiqc [DEBUG ] No samples found: trimmomatic [2024-12-10 11:08:52,671] multiqc [DEBUG ] No samples found: sickle [2024-12-10 11:08:52,690] multiqc [DEBUG ] No samples found: skewer [2024-12-10 11:08:52,699] multiqc [DEBUG ] No samples found: sortmerna [2024-12-10 11:08:52,707] multiqc [DEBUG ] No samples found: biobloomtools [2024-12-10 11:08:52,738] multiqc [DEBUG ] No samples found: fastq_screen [2024-12-10 11:08:52,769] multiqc [DEBUG ] No samples found: afterqc [2024-12-10 11:08:52,827] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-12-10 11:08:52,850] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-12-10 11:08:52,877] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-12-10 11:08:52,902] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-12-10 11:08:52,926] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-12-10 11:08:52,928] multiqc.modules.fastp.fastp [INFO ] Found 5 reports [2024-12-10 11:08:54,274] multiqc.modules.fastqc.fastqc [INFO ] Found 10 reports [2024-12-10 11:08:54,274] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2024-12-10 11:08:54,836] multiqc [DEBUG ] No samples found: pychopper [2024-12-10 11:08:54,854] multiqc [DEBUG ] No samples found: pycoqc [2024-12-10 11:08:54,863] multiqc [DEBUG ] No samples found: minionqc [2024-12-10 11:08:54,899] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-12-10 11:08:54,935] multiqc [DEBUG ] No samples found: clusterflow [2024-12-10 11:08:54,977] multiqc [DEBUG ] No samples found: bcl2fastq [2024-12-10 11:08:54,987] multiqc [DEBUG ] No samples found: bclconvert [2024-12-10 11:08:55,014] multiqc [DEBUG ] No samples found: interop [2024-12-10 11:08:55,052] multiqc [DEBUG ] No samples found: ivar [2024-12-10 11:08:55,079] multiqc [DEBUG ] No samples found: flash [2024-12-10 11:08:55,088] multiqc [DEBUG ] No samples found: seqyclean [2024-12-10 11:08:55,096] multiqc [DEBUG ] No samples found: optitype [2024-12-10 11:08:55,124] multiqc [INFO ] Compressing plot data [2024-12-10 11:08:55,702] multiqc [INFO ] Report : multiqc_report.html [2024-12-10 11:08:55,702] multiqc [INFO ] Data : multiqc_data [2024-12-10 11:08:55,702] multiqc [DEBUG ] Moving data file from '/scratch/tmp1_ujpne1/multiqc_data' to '/projectnb/wax-dk/max/test_rnaseq/Scripts/99_final_summary/test_rnaseq_multiqc_report/multiqc_data' [2024-12-10 11:08:56,345] multiqc [INFO ] MultiQC complete