[2024-03-11 17:32:00,827] multiqc [DEBUG ] This is MultiQC v1.11 [2024-03-11 17:32:00,827] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-03-11 17:32:00,828] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/zzhang3/.multiqc_config.yaml [2024-03-11 17:32:00,828] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-03-11 17:32:00,830] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-03-11 17:32:00,830] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-03-11 17:32:00,830] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221_0/SAMPLES /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/06_CollectMetrics/ [2024-03-11 17:32:03,860] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-03-11 17:32:03,861] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221_0/SAMPLES /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/06_CollectMetrics/ [2024-03-11 17:32:03,861] multiqc [DEBUG ] Working dir : /projectnb/wax-es/zzhang/zz_G221_0/Scripts/14_final_summary/zz_G221_0_multiqc_report [2024-03-11 17:32:03,861] multiqc [DEBUG ] Template : default [2024-03-11 17:32:03,861] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-03-11 17:32:03,862] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-03-11 17:32:03,862] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpzcbuai1y [2024-03-11 17:32:04,285] multiqc [INFO ] Search path : /projectnb/wax-es/zzhang/zz_G221_0/SAMPLES [2024-03-11 17:32:04,286] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/03_FASTQC [2024-03-11 17:32:04,286] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221_0/Scripts/06_CollectMetrics [2024-03-11 17:32:04,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:04,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:04,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:04,476] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,436] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:05,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 17:32:06,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:06,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:06,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:06,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,442] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,450] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:07,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 17:32:08,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:08,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:08,489] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,496] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,496] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:08,518] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:09,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 17:32:10,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:10,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:10,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,471] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,474] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:10,496] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:11,475] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 17:32:12,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:12,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:12,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,474] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,474] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:12,499] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,542] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,542] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:13,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 17:32:14,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:14,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:14,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:14,644] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,604] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:15,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 17:32:16,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:16,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:16,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:16,645] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:17,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 17:32:18,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:18,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:18,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,597] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:18,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,590] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,594] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:19,620] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 17:32:20,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:20,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:20,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,627] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:20,648] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:21,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 17:32:22,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:22,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:22,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,638] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:22,661] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:23,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 17:32:24,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:24,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:24,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,706] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,711] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,711] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:24,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:25,697] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 17:32:26,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 17:32:26,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 17:32:26,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,684] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,688] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,688] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,689] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:26,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,637] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:27,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 17:32:28,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 17:32:28,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 17:32:28,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 17:32:28,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 17:32:28,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 17:32:28,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 17:32:28,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 17:32:28,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-11 17:32:28,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-11 17:32:28,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 17:32:28,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 17:32:28,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 17:32:28,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 17:32:28,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 17:32:28,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 17:32:28,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 17:32:28,817] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 17:32:28,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 17:32:28,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:28,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 17:32:29,630] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 17:32:29,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 17:32:29,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 17:32:29,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 17:32:29,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 17:32:29,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 17:32:29,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 17:32:29,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 17:32:29,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 17:32:29,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 17:32:30,642] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-11 17:32:30,645] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-11 17:32:30,648] multiqc [DEBUG ] No samples found: custom_content [2024-03-11 17:32:30,656] multiqc [DEBUG ] No samples found: ccs [2024-03-11 17:32:30,664] multiqc [DEBUG ] No samples found: ngsderive [2024-03-11 17:32:30,672] multiqc [DEBUG ] No samples found: purple [2024-03-11 17:32:30,678] multiqc [DEBUG ] No samples found: conpair [2024-03-11 17:32:30,684] multiqc [DEBUG ] No samples found: lima [2024-03-11 17:32:30,690] multiqc [DEBUG ] No samples found: peddy [2024-03-11 17:32:30,696] multiqc [DEBUG ] No samples found: somalier [2024-03-11 17:32:30,703] multiqc [DEBUG ] No samples found: methylQA [2024-03-11 17:32:30,714] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-03-11 17:32:30,714] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-03-11 17:32:30,714] multiqc [DEBUG ] No samples found: mosdepth [2024-03-11 17:32:30,720] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-03-11 17:32:30,724] multiqc [DEBUG ] No samples found: qualimap [2024-03-11 17:32:30,730] multiqc [DEBUG ] No samples found: preseq [2024-03-11 17:32:30,735] multiqc [DEBUG ] No samples found: quast [2024-03-11 17:32:30,740] multiqc [DEBUG ] No samples found: qorts [2024-03-11 17:32:30,745] multiqc [DEBUG ] No samples found: rna_seqc [2024-03-11 17:32:30,753] multiqc [DEBUG ] No samples found: rockhopper [2024-03-11 17:32:30,759] multiqc [DEBUG ] No samples found: rsem [2024-03-11 17:32:30,781] multiqc.modules.rseqc.rseqc [INFO ] Found 12 infer_experiment reports [2024-03-11 17:32:30,791] multiqc [DEBUG ] No samples found: busco [2024-03-11 17:32:30,798] multiqc [DEBUG ] No samples found: bustools [2024-03-11 17:32:30,803] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-03-11 17:32:30,809] multiqc [DEBUG ] No samples found: gffcompare [2024-03-11 17:32:30,814] multiqc [DEBUG ] No samples found: disambiguate [2024-03-11 17:32:30,820] multiqc [DEBUG ] No samples found: supernova [2024-03-11 17:32:30,837] multiqc [DEBUG ] No samples found: deeptools [2024-03-11 17:32:30,846] multiqc [DEBUG ] No samples found: sargasso [2024-03-11 17:32:30,854] multiqc [DEBUG ] No samples found: verifybamid [2024-03-11 17:32:30,861] multiqc [DEBUG ] No samples found: mirtrace [2024-03-11 17:32:30,867] multiqc [DEBUG ] No samples found: happy [2024-03-11 17:32:30,872] multiqc [DEBUG ] No samples found: mirtop [2024-03-11 17:32:30,878] multiqc [DEBUG ] No samples found: sambamba [2024-03-11 17:32:30,888] multiqc [DEBUG ] No samples found: homer [2024-03-11 17:32:30,894] multiqc [DEBUG ] No samples found: hops [2024-03-11 17:32:30,901] multiqc [DEBUG ] No samples found: macs2 [2024-03-11 17:32:30,906] multiqc [DEBUG ] No samples found: theta2 [2024-03-11 17:32:30,916] multiqc [DEBUG ] No samples found: snpeff [2024-03-11 17:32:30,927] multiqc [DEBUG ] No samples found: gatk [2024-03-11 17:32:30,936] multiqc [DEBUG ] No samples found: htseq [2024-03-11 17:32:30,943] multiqc [DEBUG ] No samples found: bcftools [2024-03-11 17:32:30,951] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted [2024-03-11 17:32:30,952] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted [2024-03-11 17:32:30,953] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2024-03-11 17:32:30,954] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2024-03-11 17:32:30,955] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted [2024-03-11 17:32:30,955] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2024-03-11 17:32:30,956] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2024-03-11 17:32:30,957] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted [2024-03-11 17:32:30,958] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted [2024-03-11 17:32:30,958] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2024-03-11 17:32:30,959] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2024-03-11 17:32:30,959] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted [2024-03-11 17:32:30,959] multiqc.modules.featureCounts.feature_counts [INFO ] Found 12 reports [2024-03-11 17:32:30,976] multiqc [DEBUG ] No samples found: fgbio [2024-03-11 17:32:30,995] multiqc [DEBUG ] No samples found: dragen [2024-03-11 17:32:31,033] multiqc [DEBUG ] No samples found: dedup [2024-03-11 17:32:31,042] multiqc [DEBUG ] No samples found: damageprofiler [2024-03-11 17:32:31,085] multiqc [DEBUG ] No samples found: biobambam2 [2024-03-11 17:32:31,095] multiqc [DEBUG ] No samples found: jcvi [2024-03-11 17:32:31,102] multiqc [DEBUG ] No samples found: mtnucratio [2024-03-11 17:32:31,106] multiqc [DEBUG ] No samples found: picard [2024-03-11 17:32:31,111] multiqc [DEBUG ] No samples found: vep [2024-03-11 17:32:31,122] multiqc [DEBUG ] No samples found: sentieon [2024-03-11 17:32:31,131] multiqc [DEBUG ] No samples found: prokka [2024-03-11 17:32:31,139] multiqc [DEBUG ] No samples found: qc3C [2024-03-11 17:32:31,145] multiqc [DEBUG ] No samples found: nanostat [2024-03-11 17:32:31,151] multiqc [DEBUG ] No samples found: samblaster [2024-03-11 17:32:31,167] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,167] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,168] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,168] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,168] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,169] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,169] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,170] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,170] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,170] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,171] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 17:32:31,172] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2024-03-11 17:32:31,178] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-03-11 17:32:31,183] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-03-11 17:32:31,190] multiqc [DEBUG ] No samples found: bamtools [2024-03-11 17:32:31,199] multiqc [DEBUG ] No samples found: jellyfish [2024-03-11 17:32:31,212] multiqc [DEBUG ] No samples found: vcftools [2024-03-11 17:32:31,220] multiqc [DEBUG ] No samples found: longranger [2024-03-11 17:32:31,227] multiqc [DEBUG ] No samples found: stacks [2024-03-11 17:32:31,234] multiqc [DEBUG ] No samples found: varscan2 [2024-03-11 17:32:31,239] multiqc [DEBUG ] No samples found: snippy [2024-03-11 17:32:31,259] multiqc [DEBUG ] No samples found: bbmap [2024-03-11 17:32:31,267] multiqc [DEBUG ] No samples found: bismark [2024-03-11 17:32:31,277] multiqc [DEBUG ] No samples found: biscuit [2024-03-11 17:32:31,283] multiqc [DEBUG ] No samples found: hicexplorer [2024-03-11 17:32:31,292] multiqc [DEBUG ] No samples found: hicup [2024-03-11 17:32:31,302] multiqc [DEBUG ] No samples found: hicpro [2024-03-11 17:32:31,309] multiqc [DEBUG ] No samples found: salmon [2024-03-11 17:32:31,315] multiqc [DEBUG ] No samples found: kallisto [2024-03-11 17:32:31,321] multiqc [DEBUG ] No samples found: slamdunk [2024-03-11 17:32:31,330] multiqc [DEBUG ] No samples found: star [2024-03-11 17:32:31,337] multiqc [DEBUG ] No samples found: hisat2 [2024-03-11 17:32:31,344] multiqc [DEBUG ] No samples found: tophat [2024-03-11 17:32:31,351] multiqc [DEBUG ] No samples found: bowtie2 [2024-03-11 17:32:31,356] multiqc [DEBUG ] No samples found: bowtie1 [2024-03-11 17:32:31,364] multiqc [DEBUG ] No samples found: snpsplit [2024-03-11 17:32:31,371] multiqc [DEBUG ] No samples found: odgi [2024-03-11 17:32:31,377] multiqc [DEBUG ] No samples found: pangolin [2024-03-11 17:32:31,382] multiqc [DEBUG ] No samples found: kat [2024-03-11 17:32:31,387] multiqc [DEBUG ] No samples found: leehom [2024-03-11 17:32:31,392] multiqc [DEBUG ] No samples found: adapterRemoval [2024-03-11 17:32:31,397] multiqc [DEBUG ] No samples found: clipandmerge [2024-03-11 17:32:31,402] multiqc [DEBUG ] No samples found: cutadapt [2024-03-11 17:32:31,407] multiqc [DEBUG ] No samples found: flexbar [2024-03-11 17:32:31,412] multiqc [DEBUG ] No samples found: kaiju [2024-03-11 17:32:31,417] multiqc [DEBUG ] No samples found: kraken [2024-03-11 17:32:31,421] multiqc [DEBUG ] No samples found: malt [2024-03-11 17:32:31,426] multiqc [DEBUG ] No samples found: trimmomatic [2024-03-11 17:32:31,431] multiqc [DEBUG ] No samples found: sickle [2024-03-11 17:32:31,436] multiqc [DEBUG ] No samples found: skewer [2024-03-11 17:32:31,441] multiqc [DEBUG ] No samples found: sortmerna [2024-03-11 17:32:31,446] multiqc [DEBUG ] No samples found: biobloomtools [2024-03-11 17:32:31,451] multiqc [DEBUG ] No samples found: fastq_screen [2024-03-11 17:32:31,457] multiqc [DEBUG ] No samples found: afterqc [2024-03-11 17:32:31,462] multiqc [DEBUG ] No samples found: fastp [2024-03-11 17:32:31,470] multiqc [DEBUG ] No samples found: fastqc [2024-03-11 17:32:31,477] multiqc [DEBUG ] No samples found: pychopper [2024-03-11 17:32:31,483] multiqc [DEBUG ] No samples found: pycoqc [2024-03-11 17:32:31,492] multiqc [DEBUG ] No samples found: minionqc [2024-03-11 17:32:31,499] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-03-11 17:32:31,504] multiqc [DEBUG ] No samples found: clusterflow [2024-03-11 17:32:31,511] multiqc [DEBUG ] No samples found: bcl2fastq [2024-03-11 17:32:31,518] multiqc [DEBUG ] No samples found: bclconvert [2024-03-11 17:32:31,524] multiqc [DEBUG ] No samples found: interop [2024-03-11 17:32:31,531] multiqc [DEBUG ] No samples found: ivar [2024-03-11 17:32:31,538] multiqc [DEBUG ] No samples found: flash [2024-03-11 17:32:31,544] multiqc [DEBUG ] No samples found: seqyclean [2024-03-11 17:32:31,551] multiqc [DEBUG ] No samples found: optitype [2024-03-11 17:32:31,558] multiqc [INFO ] Compressing plot data [2024-03-11 17:32:31,565] multiqc [INFO ] Report : multiqc_report.html [2024-03-11 17:32:31,565] multiqc [INFO ] Data : multiqc_data [2024-03-11 17:32:31,565] multiqc [DEBUG ] Moving data file from '/scratch/tmpzcbuai1y/multiqc_data' to '/projectnb/wax-es/zzhang/zz_G221_0/Scripts/14_final_summary/zz_G221_0_multiqc_report/multiqc_data' [2024-03-11 17:32:32,171] multiqc [INFO ] MultiQC complete