[2024-03-11 13:14:48,219] multiqc [DEBUG ] This is MultiQC v1.11
[2024-03-11 13:14:48,220] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml
[2024-03-11 13:14:48,220] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/zzhang3/.multiqc_config.yaml
[2024-03-11 13:14:48,220] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2024-03-11 13:14:48,221] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml
[2024-03-11 13:14:48,221] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}}
[2024-03-11 13:14:48,221] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/
[2024-03-11 13:14:48,694] multiqc [WARNING] MultiQC Version v1.21 now available!
[2024-03-11 13:14:48,695] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/
[2024-03-11 13:14:48,695] multiqc [DEBUG ] Working dir : /projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report
[2024-03-11 13:14:48,695] multiqc [DEBUG ] Template : default
[2024-03-11 13:14:48,695] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0]
[2024-03-11 13:14:48,696] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype
[2024-03-11 13:14:48,696] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpwnjnk19_
[2024-03-11 13:14:48,797] multiqc [INFO ] Search path : /projectnb/wax-es/zzhang/zz_G221/SAMPLES
[2024-03-11 13:14:48,797] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC
[2024-03-11 13:14:48,798] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics
[2024-03-11 13:14:48,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:48,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:48,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:48,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,924] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,925] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,925] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,925] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:49,943] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out
[2024-03-11 13:14:50,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:50,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:50,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,954] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,955] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:50,975] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,889] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,893] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:51,911] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out
[2024-03-11 13:14:52,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:52,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:52,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,886] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:52,904] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:53,859] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out
[2024-03-11 13:14:54,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:54,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:54,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,864] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,867] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:54,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:55,842] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out
[2024-03-11 13:14:56,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:56,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:56,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,828] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:56,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,771] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,771] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,771] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,772] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,772] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,772] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,772] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:57,790] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out
[2024-03-11 13:14:58,731] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:14:58,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:14:58,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:58,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,718] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,723] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:14:59,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out
[2024-03-11 13:15:00,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:00,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:00,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,719] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,720] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:00,747] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:01,693] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out
[2024-03-11 13:15:02,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:02,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:02,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:02,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,631] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,631] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:03,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out
[2024-03-11 13:15:04,610] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:04,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:04,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:04,671] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,595] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,601] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,602] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:05,626] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out
[2024-03-11 13:15:06,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:06,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:06,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:06,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,514] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,518] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,522] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,522] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,523] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:07,541] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out
[2024-03-11 13:15:08,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:08,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:08,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,538] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:08,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,461] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:09,483] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out
[2024-03-11 13:15:10,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz
[2024-03-11 13:15:10,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz
[2024-03-11 13:15:10,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,448] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,448] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:10,466] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,370] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:11,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out
[2024-03-11 13:15:12,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh
[2024-03-11 13:15:12,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh
[2024-03-11 13:15:12,396] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub
[2024-03-11 13:15:12,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub
[2024-03-11 13:15:12,400] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub
[2024-03-11 13:15:12,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub
[2024-03-11 13:15:12,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub
[2024-03-11 13:15:12,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub
[2024-03-11 13:15:12,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub
[2024-03-11 13:15:12,461] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh
[2024-03-11 13:15:12,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub
[2024-03-11 13:15:12,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub
[2024-03-11 13:15:12,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub
[2024-03-11 13:15:12,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub
[2024-03-11 13:15:12,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub
[2024-03-11 13:15:12,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt
[2024-03-11 13:15:12,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh
[2024-03-11 13:15:12,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh
[2024-03-11 13:15:12,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:12,561] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat
[2024-03-11 13:15:13,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT
[2024-03-11 13:15:13,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT
[2024-03-11 13:15:13,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT
[2024-03-11 13:15:13,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT
[2024-03-11 13:15:13,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT
[2024-03-11 13:15:13,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR
[2024-03-11 13:15:13,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR
[2024-03-11 13:15:13,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR
[2024-03-11 13:15:13,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR
[2024-03-11 13:15:13,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR
[2024-03-11 13:15:14,156] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3
[2024-03-11 13:15:14,158] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3
[2024-03-11 13:15:14,160] multiqc [DEBUG ] No samples found: custom_content
[2024-03-11 13:15:14,168] multiqc [DEBUG ] No samples found: ccs
[2024-03-11 13:15:14,175] multiqc [DEBUG ] No samples found: ngsderive
[2024-03-11 13:15:14,181] multiqc [DEBUG ] No samples found: purple
[2024-03-11 13:15:14,190] multiqc [DEBUG ] No samples found: conpair
[2024-03-11 13:15:14,196] multiqc [DEBUG ] No samples found: lima
[2024-03-11 13:15:14,202] multiqc [DEBUG ] No samples found: peddy
[2024-03-11 13:15:14,207] multiqc [DEBUG ] No samples found: somalier
[2024-03-11 13:15:14,211] multiqc [DEBUG ] No samples found: methylQA
[2024-03-11 13:15:14,220] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: []
[2024-03-11 13:15:14,220] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: []
[2024-03-11 13:15:14,220] multiqc [DEBUG ] No samples found: mosdepth
[2024-03-11 13:15:14,225] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2024-03-11 13:15:14,229] multiqc [DEBUG ] No samples found: qualimap
[2024-03-11 13:15:14,236] multiqc [DEBUG ] No samples found: preseq
[2024-03-11 13:15:14,243] multiqc [DEBUG ] No samples found: quast
[2024-03-11 13:15:14,252] multiqc [DEBUG ] No samples found: qorts
[2024-03-11 13:15:14,259] multiqc [DEBUG ] No samples found: rna_seqc
[2024-03-11 13:15:14,265] multiqc [DEBUG ] No samples found: rockhopper
[2024-03-11 13:15:14,271] multiqc [DEBUG ] No samples found: rsem
[2024-03-11 13:15:14,290] multiqc.modules.rseqc.rseqc [INFO ] Found 12 infer_experiment reports
[2024-03-11 13:15:14,299] multiqc [DEBUG ] No samples found: busco
[2024-03-11 13:15:14,303] multiqc [DEBUG ] No samples found: bustools
[2024-03-11 13:15:14,308] multiqc [DEBUG ] No samples found: goleft_indexcov
[2024-03-11 13:15:14,313] multiqc [DEBUG ] No samples found: gffcompare
[2024-03-11 13:15:14,319] multiqc [DEBUG ] No samples found: disambiguate
[2024-03-11 13:15:14,324] multiqc [DEBUG ] No samples found: supernova
[2024-03-11 13:15:14,337] multiqc [DEBUG ] No samples found: deeptools
[2024-03-11 13:15:14,342] multiqc [DEBUG ] No samples found: sargasso
[2024-03-11 13:15:14,347] multiqc [DEBUG ] No samples found: verifybamid
[2024-03-11 13:15:14,352] multiqc [DEBUG ] No samples found: mirtrace
[2024-03-11 13:15:14,356] multiqc [DEBUG ] No samples found: happy
[2024-03-11 13:15:14,363] multiqc [DEBUG ] No samples found: mirtop
[2024-03-11 13:15:14,368] multiqc [DEBUG ] No samples found: sambamba
[2024-03-11 13:15:14,374] multiqc [DEBUG ] No samples found: homer
[2024-03-11 13:15:14,382] multiqc [DEBUG ] No samples found: hops
[2024-03-11 13:15:14,391] multiqc [DEBUG ] No samples found: macs2
[2024-03-11 13:15:14,398] multiqc [DEBUG ] No samples found: theta2
[2024-03-11 13:15:14,404] multiqc [DEBUG ] No samples found: snpeff
[2024-03-11 13:15:14,411] multiqc [DEBUG ] No samples found: gatk
[2024-03-11 13:15:14,416] multiqc [DEBUG ] No samples found: htseq
[2024-03-11 13:15:14,422] multiqc [DEBUG ] No samples found: bcftools
[2024-03-11 13:15:14,428] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted
[2024-03-11 13:15:14,428] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted
[2024-03-11 13:15:14,429] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted
[2024-03-11 13:15:14,430] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted
[2024-03-11 13:15:14,430] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted
[2024-03-11 13:15:14,431] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted
[2024-03-11 13:15:14,431] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted
[2024-03-11 13:15:14,432] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted
[2024-03-11 13:15:14,432] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted
[2024-03-11 13:15:14,433] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted
[2024-03-11 13:15:14,433] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted
[2024-03-11 13:15:14,434] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted
[2024-03-11 13:15:14,435] multiqc.modules.featureCounts.feature_counts [INFO ] Found 12 reports
[2024-03-11 13:15:14,451] multiqc [DEBUG ] No samples found: fgbio
[2024-03-11 13:15:14,470] multiqc [DEBUG ] No samples found: dragen
[2024-03-11 13:15:14,478] multiqc [DEBUG ] No samples found: dedup
[2024-03-11 13:15:14,485] multiqc [DEBUG ] No samples found: damageprofiler
[2024-03-11 13:15:14,515] multiqc [DEBUG ] No samples found: biobambam2
[2024-03-11 13:15:14,522] multiqc [DEBUG ] No samples found: jcvi
[2024-03-11 13:15:14,528] multiqc [DEBUG ] No samples found: mtnucratio
[2024-03-11 13:15:14,532] multiqc [DEBUG ] No samples found: picard
[2024-03-11 13:15:14,537] multiqc [DEBUG ] No samples found: vep
[2024-03-11 13:15:14,545] multiqc [DEBUG ] No samples found: sentieon
[2024-03-11 13:15:14,549] multiqc [DEBUG ] No samples found: prokka
[2024-03-11 13:15:14,554] multiqc [DEBUG ] No samples found: qc3C
[2024-03-11 13:15:14,560] multiqc [DEBUG ] No samples found: nanostat
[2024-03-11 13:15:14,564] multiqc [DEBUG ] No samples found: samblaster
[2024-03-11 13:15:14,575] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,576] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,576] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,576] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,577] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,577] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,577] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,578] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,578] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,579] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,579] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads
[2024-03-11 13:15:14,580] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports
[2024-03-11 13:15:14,585] multiqc [DEBUG ] No samples found: sexdeterrmine
[2024-03-11 13:15:14,590] multiqc [DEBUG ] No samples found: eigenstratdatabasetools
[2024-03-11 13:15:14,596] multiqc [DEBUG ] No samples found: bamtools
[2024-03-11 13:15:14,600] multiqc [DEBUG ] No samples found: jellyfish
[2024-03-11 13:15:14,609] multiqc [DEBUG ] No samples found: vcftools
[2024-03-11 13:15:14,613] multiqc [DEBUG ] No samples found: longranger
[2024-03-11 13:15:14,618] multiqc [DEBUG ] No samples found: stacks
[2024-03-11 13:15:14,623] multiqc [DEBUG ] No samples found: varscan2
[2024-03-11 13:15:14,628] multiqc [DEBUG ] No samples found: snippy
[2024-03-11 13:15:14,643] multiqc [DEBUG ] No samples found: bbmap
[2024-03-11 13:15:14,649] multiqc [DEBUG ] No samples found: bismark
[2024-03-11 13:15:14,654] multiqc [DEBUG ] No samples found: biscuit
[2024-03-11 13:15:14,659] multiqc [DEBUG ] No samples found: hicexplorer
[2024-03-11 13:15:14,664] multiqc [DEBUG ] No samples found: hicup
[2024-03-11 13:15:14,669] multiqc [DEBUG ] No samples found: hicpro
[2024-03-11 13:15:14,674] multiqc [DEBUG ] No samples found: salmon
[2024-03-11 13:15:14,680] multiqc [DEBUG ] No samples found: kallisto
[2024-03-11 13:15:14,684] multiqc [DEBUG ] No samples found: slamdunk
[2024-03-11 13:15:14,689] multiqc [DEBUG ] No samples found: star
[2024-03-11 13:15:14,694] multiqc [DEBUG ] No samples found: hisat2
[2024-03-11 13:15:14,699] multiqc [DEBUG ] No samples found: tophat
[2024-03-11 13:15:14,704] multiqc [DEBUG ] No samples found: bowtie2
[2024-03-11 13:15:14,708] multiqc [DEBUG ] No samples found: bowtie1
[2024-03-11 13:15:14,713] multiqc [DEBUG ] No samples found: snpsplit
[2024-03-11 13:15:14,718] multiqc [DEBUG ] No samples found: odgi
[2024-03-11 13:15:14,723] multiqc [DEBUG ] No samples found: pangolin
[2024-03-11 13:15:14,733] multiqc [DEBUG ] No samples found: kat
[2024-03-11 13:15:14,738] multiqc [DEBUG ] No samples found: leehom
[2024-03-11 13:15:14,744] multiqc [DEBUG ] No samples found: adapterRemoval
[2024-03-11 13:15:14,749] multiqc [DEBUG ] No samples found: clipandmerge
[2024-03-11 13:15:14,753] multiqc [DEBUG ] No samples found: cutadapt
[2024-03-11 13:15:14,758] multiqc [DEBUG ] No samples found: flexbar
[2024-03-11 13:15:14,763] multiqc [DEBUG ] No samples found: kaiju
[2024-03-11 13:15:14,767] multiqc [DEBUG ] No samples found: kraken
[2024-03-11 13:15:14,772] multiqc [DEBUG ] No samples found: malt
[2024-03-11 13:15:14,777] multiqc [DEBUG ] No samples found: trimmomatic
[2024-03-11 13:15:14,781] multiqc [DEBUG ] No samples found: sickle
[2024-03-11 13:15:14,786] multiqc [DEBUG ] No samples found: skewer
[2024-03-11 13:15:14,791] multiqc [DEBUG ] No samples found: sortmerna
[2024-03-11 13:15:14,796] multiqc [DEBUG ] No samples found: biobloomtools
[2024-03-11 13:15:14,801] multiqc [DEBUG ] No samples found: fastq_screen
[2024-03-11 13:15:14,806] multiqc [DEBUG ] No samples found: afterqc
[2024-03-11 13:15:14,811] multiqc [DEBUG ] No samples found: fastp
[2024-03-11 13:15:14,816] multiqc [DEBUG ] No samples found: fastqc
[2024-03-11 13:15:14,821] multiqc [DEBUG ] No samples found: pychopper
[2024-03-11 13:15:14,825] multiqc [DEBUG ] No samples found: pycoqc
[2024-03-11 13:15:14,831] multiqc [DEBUG ] No samples found: minionqc
[2024-03-11 13:15:14,836] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2024-03-11 13:15:14,841] multiqc [DEBUG ] No samples found: clusterflow
[2024-03-11 13:15:14,845] multiqc [DEBUG ] No samples found: bcl2fastq
[2024-03-11 13:15:14,851] multiqc [DEBUG ] No samples found: bclconvert
[2024-03-11 13:15:14,855] multiqc [DEBUG ] No samples found: interop
[2024-03-11 13:15:14,862] multiqc [DEBUG ] No samples found: ivar
[2024-03-11 13:15:14,867] multiqc [DEBUG ] No samples found: flash
[2024-03-11 13:15:14,871] multiqc [DEBUG ] No samples found: seqyclean
[2024-03-11 13:15:14,876] multiqc [DEBUG ] No samples found: optitype
[2024-03-11 13:15:14,888] multiqc [INFO ] Compressing plot data
[2024-03-11 13:15:14,898] multiqc [INFO ] Report : multiqc_report.html
[2024-03-11 13:15:14,898] multiqc [INFO ] Data : multiqc_data
[2024-03-11 13:15:14,898] multiqc [DEBUG ] Moving data file from '/scratch/tmpwnjnk19_/multiqc_data' to '/projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report/multiqc_data'
[2024-03-11 13:15:14,998] multiqc [INFO ] MultiQC complete