[2024-03-08 16:16:43,182] multiqc [DEBUG ] This is MultiQC v1.11 [2024-03-08 16:16:43,182] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-03-08 16:16:43,183] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/zzhang3/.multiqc_config.yaml [2024-03-08 16:16:43,183] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-03-08 16:16:43,185] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-03-08 16:16:43,185] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-03-08 16:16:43,185] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/ [2024-03-08 16:16:43,839] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-03-08 16:16:43,839] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/ [2024-03-08 16:16:43,839] multiqc [DEBUG ] Working dir : /projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report [2024-03-08 16:16:43,840] multiqc [DEBUG ] Template : default [2024-03-08 16:16:43,840] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-03-08 16:16:43,840] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-03-08 16:16:43,841] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmplldpt25e [2024-03-08 16:16:44,237] multiqc [INFO ] Search path : /projectnb/wax-es/zzhang/zz_G221/SAMPLES [2024-03-08 16:16:44,238] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC [2024-03-08 16:16:44,238] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics [2024-03-08 16:16:44,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:44,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:44,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,740] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,740] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,799] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,799] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:44,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:45,895] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-08 16:16:46,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:46,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:46,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:46,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:47,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-08 16:16:48,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:48,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:48,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,901] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:48,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,898] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:49,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-08 16:16:50,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:50,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:50,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,974] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,977] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,978] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:50,998] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,973] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,980] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:51,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:52,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-08 16:16:52,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:52,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:53,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,021] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,021] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,027] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,027] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,027] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,028] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,028] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,028] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:53,049] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,027] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-08 16:16:54,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:54,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:55,052] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,060] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,060] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,061] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:55,083] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,042] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,051] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:56,075] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-08 16:16:57,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:57,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:57,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,092] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:57,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,088] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:58,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-08 16:16:59,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:16:59,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:16:59,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,072] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:16:59,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,067] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:00,089] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-08 16:17:01,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:17:01,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:17:01,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,071] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:01,093] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,037] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,037] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,038] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,038] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:02,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-08 16:17:03,052] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:17:03,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:17:03,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,075] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:03,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,123] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:04,148] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-08 16:17:05,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:17:05,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:17:05,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,153] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,153] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:05,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,141] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,141] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:06,222] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-08 16:17:07,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-08 16:17:07,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-08 16:17:07,217] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:07,251] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,196] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:08,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-08 16:17:09,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-08 16:17:09,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-08 16:17:09,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-08 16:17:09,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-08 16:17:09,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-08 16:17:09,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-08 16:17:09,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-08 16:17:09,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-08 16:17:09,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-08 16:17:09,308] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-08 16:17:09,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-08 16:17:09,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-08 16:17:09,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-08 16:17:09,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-08 16:17:09,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-08 16:17:09,371] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,373] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-08 16:17:09,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-08 16:17:09,392] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-08 16:17:09,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:09,460] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-03-08 16:17:10,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-08 16:17:10,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-08 16:17:10,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-08 16:17:10,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-08 16:17:10,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-08 16:17:10,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-08 16:17:10,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-08 16:17:10,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-08 16:17:10,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-08 16:17:10,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-08 16:17:13,883] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-08 16:17:13,911] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-08 16:17:13,914] multiqc [DEBUG ] No samples found: custom_content [2024-03-08 16:17:13,925] multiqc [DEBUG ] No samples found: ccs [2024-03-08 16:17:13,958] multiqc [DEBUG ] No samples found: ngsderive [2024-03-08 16:17:13,969] multiqc [DEBUG ] No samples found: purple [2024-03-08 16:17:13,977] multiqc [DEBUG ] No samples found: conpair [2024-03-08 16:17:14,010] multiqc [DEBUG ] No samples found: lima [2024-03-08 16:17:14,044] multiqc [DEBUG ] No samples found: peddy [2024-03-08 16:17:14,056] multiqc [DEBUG ] No samples found: somalier [2024-03-08 16:17:14,091] multiqc [DEBUG ] No samples found: methylQA [2024-03-08 16:17:14,131] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-03-08 16:17:14,131] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-03-08 16:17:14,131] multiqc [DEBUG ] No samples found: mosdepth [2024-03-08 16:17:14,139] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-03-08 16:17:14,168] multiqc [DEBUG ] No samples found: qualimap [2024-03-08 16:17:14,205] multiqc [DEBUG ] No samples found: preseq [2024-03-08 16:17:14,225] multiqc [DEBUG ] No samples found: quast [2024-03-08 16:17:14,257] multiqc [DEBUG ] No samples found: qorts [2024-03-08 16:17:14,285] multiqc [DEBUG ] No samples found: rna_seqc [2024-03-08 16:17:14,316] multiqc [DEBUG ] No samples found: rockhopper [2024-03-08 16:17:14,354] multiqc [DEBUG ] No samples found: rsem [2024-03-08 16:17:14,407] multiqc.modules.rseqc.rseqc [INFO ] Found 12 infer_experiment reports [2024-03-08 16:17:14,428] multiqc [DEBUG ] No samples found: busco [2024-03-08 16:17:14,441] multiqc [DEBUG ] No samples found: bustools [2024-03-08 16:17:14,469] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-03-08 16:17:14,500] multiqc [DEBUG ] No samples found: gffcompare [2024-03-08 16:17:14,510] multiqc [DEBUG ] No samples found: disambiguate [2024-03-08 16:17:14,547] multiqc [DEBUG ] No samples found: supernova [2024-03-08 16:17:14,623] multiqc [DEBUG ] No samples found: deeptools [2024-03-08 16:17:14,657] multiqc [DEBUG ] No samples found: sargasso [2024-03-08 16:17:14,693] multiqc [DEBUG ] No samples found: verifybamid [2024-03-08 16:17:14,733] multiqc [DEBUG ] No samples found: mirtrace [2024-03-08 16:17:14,744] multiqc [DEBUG ] No samples found: happy [2024-03-08 16:17:14,754] multiqc [DEBUG ] No samples found: mirtop [2024-03-08 16:17:14,792] multiqc [DEBUG ] No samples found: sambamba [2024-03-08 16:17:14,805] multiqc [DEBUG ] No samples found: homer [2024-03-08 16:17:14,821] multiqc [DEBUG ] No samples found: hops [2024-03-08 16:17:14,828] multiqc [DEBUG ] No samples found: macs2 [2024-03-08 16:17:14,836] multiqc [DEBUG ] No samples found: theta2 [2024-03-08 16:17:14,856] multiqc [DEBUG ] No samples found: snpeff [2024-03-08 16:17:14,885] multiqc [DEBUG ] No samples found: gatk [2024-03-08 16:17:14,895] multiqc [DEBUG ] No samples found: htseq [2024-03-08 16:17:14,907] multiqc [DEBUG ] No samples found: bcftools [2024-03-08 16:17:14,930] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted [2024-03-08 16:17:14,931] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted [2024-03-08 16:17:14,932] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2024-03-08 16:17:14,934] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2024-03-08 16:17:14,935] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted [2024-03-08 16:17:14,936] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2024-03-08 16:17:14,937] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2024-03-08 16:17:14,938] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted [2024-03-08 16:17:14,939] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted [2024-03-08 16:17:14,940] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2024-03-08 16:17:14,941] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2024-03-08 16:17:14,942] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted [2024-03-08 16:17:14,943] multiqc.modules.featureCounts.feature_counts [INFO ] Found 12 reports [2024-03-08 16:17:15,005] multiqc [DEBUG ] No samples found: fgbio [2024-03-08 16:17:15,118] multiqc [DEBUG ] No samples found: dragen [2024-03-08 16:17:15,157] multiqc [DEBUG ] No samples found: dedup [2024-03-08 16:17:15,188] multiqc [DEBUG ] No samples found: damageprofiler [2024-03-08 16:17:15,439] multiqc [DEBUG ] No samples found: biobambam2 [2024-03-08 16:17:15,464] multiqc [DEBUG ] No samples found: jcvi [2024-03-08 16:17:15,474] multiqc [DEBUG ] No samples found: mtnucratio [2024-03-08 16:17:15,478] multiqc [DEBUG ] No samples found: picard [2024-03-08 16:17:15,509] multiqc [DEBUG ] No samples found: vep [2024-03-08 16:17:15,549] multiqc [DEBUG ] No samples found: sentieon [2024-03-08 16:17:15,559] multiqc [DEBUG ] No samples found: prokka [2024-03-08 16:17:15,577] multiqc [DEBUG ] No samples found: qc3C [2024-03-08 16:17:15,610] multiqc [DEBUG ] No samples found: nanostat [2024-03-08 16:17:15,647] multiqc [DEBUG ] No samples found: samblaster [2024-03-08 16:17:15,760] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,762] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,764] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,766] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,768] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,770] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,772] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,774] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,776] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,779] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,781] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-08 16:17:15,783] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2024-03-08 16:17:15,836] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-03-08 16:17:15,869] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-03-08 16:17:15,907] multiqc [DEBUG ] No samples found: bamtools [2024-03-08 16:17:15,941] multiqc [DEBUG ] No samples found: jellyfish [2024-03-08 16:17:15,998] multiqc [DEBUG ] No samples found: vcftools [2024-03-08 16:17:16,031] multiqc [DEBUG ] No samples found: longranger [2024-03-08 16:17:16,084] multiqc [DEBUG ] No samples found: stacks [2024-03-08 16:17:16,115] multiqc [DEBUG ] No samples found: varscan2 [2024-03-08 16:17:16,154] multiqc [DEBUG ] No samples found: snippy [2024-03-08 16:17:16,300] multiqc [DEBUG ] No samples found: bbmap [2024-03-08 16:17:16,361] multiqc [DEBUG ] No samples found: bismark [2024-03-08 16:17:16,385] multiqc [DEBUG ] No samples found: biscuit [2024-03-08 16:17:16,394] multiqc [DEBUG ] No samples found: hicexplorer [2024-03-08 16:17:16,423] multiqc [DEBUG ] No samples found: hicup [2024-03-08 16:17:16,455] multiqc [DEBUG ] No samples found: hicpro [2024-03-08 16:17:16,465] multiqc [DEBUG ] No samples found: salmon [2024-03-08 16:17:16,474] multiqc [DEBUG ] No samples found: kallisto [2024-03-08 16:17:16,503] multiqc [DEBUG ] No samples found: slamdunk [2024-03-08 16:17:16,532] multiqc [DEBUG ] No samples found: star [2024-03-08 16:17:16,540] multiqc [DEBUG ] No samples found: hisat2 [2024-03-08 16:17:16,583] multiqc [DEBUG ] No samples found: tophat [2024-03-08 16:17:16,614] multiqc [DEBUG ] No samples found: bowtie2 [2024-03-08 16:17:16,624] multiqc [DEBUG ] No samples found: bowtie1 [2024-03-08 16:17:16,647] multiqc [DEBUG ] No samples found: snpsplit [2024-03-08 16:17:16,675] multiqc [DEBUG ] No samples found: odgi [2024-03-08 16:17:16,689] multiqc [DEBUG ] No samples found: pangolin [2024-03-08 16:17:16,699] multiqc [DEBUG ] No samples found: kat [2024-03-08 16:17:16,707] multiqc [DEBUG ] No samples found: leehom [2024-03-08 16:17:16,743] multiqc [DEBUG ] No samples found: adapterRemoval [2024-03-08 16:17:16,752] multiqc [DEBUG ] No samples found: clipandmerge [2024-03-08 16:17:16,785] multiqc [DEBUG ] No samples found: cutadapt [2024-03-08 16:17:16,795] multiqc [DEBUG ] No samples found: flexbar [2024-03-08 16:17:16,803] multiqc [DEBUG ] No samples found: kaiju [2024-03-08 16:17:16,811] multiqc [DEBUG ] No samples found: kraken [2024-03-08 16:17:16,817] multiqc [DEBUG ] No samples found: malt [2024-03-08 16:17:16,854] multiqc [DEBUG ] No samples found: trimmomatic [2024-03-08 16:17:16,863] multiqc [DEBUG ] No samples found: sickle [2024-03-08 16:17:16,898] multiqc [DEBUG ] No samples found: skewer [2024-03-08 16:17:16,907] multiqc [DEBUG ] No samples found: sortmerna [2024-03-08 16:17:16,914] multiqc [DEBUG ] No samples found: biobloomtools [2024-03-08 16:17:16,944] multiqc [DEBUG ] No samples found: fastq_screen [2024-03-08 16:17:16,962] multiqc [DEBUG ] No samples found: afterqc [2024-03-08 16:17:16,996] multiqc [DEBUG ] No samples found: fastp [2024-03-08 16:17:17,014] multiqc [DEBUG ] No samples found: fastqc [2024-03-08 16:17:17,022] multiqc [DEBUG ] No samples found: pychopper [2024-03-08 16:17:17,038] multiqc [DEBUG ] No samples found: pycoqc [2024-03-08 16:17:17,049] multiqc [DEBUG ] No samples found: minionqc [2024-03-08 16:17:17,083] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-03-08 16:17:17,106] multiqc [DEBUG ] No samples found: clusterflow [2024-03-08 16:17:17,139] multiqc [DEBUG ] No samples found: bcl2fastq [2024-03-08 16:17:17,151] multiqc [DEBUG ] No samples found: bclconvert [2024-03-08 16:17:17,176] multiqc [DEBUG ] No samples found: interop [2024-03-08 16:17:17,209] multiqc [DEBUG ] No samples found: ivar [2024-03-08 16:17:17,244] multiqc [DEBUG ] No samples found: flash [2024-03-08 16:17:17,255] multiqc [DEBUG ] No samples found: seqyclean [2024-03-08 16:17:17,266] multiqc [DEBUG ] No samples found: optitype [2024-03-08 16:17:17,276] multiqc [INFO ] Compressing plot data [2024-03-08 16:17:17,285] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2024-03-08 16:17:17,285] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2024-03-08 16:17:17,286] multiqc [INFO ] Report : multiqc_report_1.html [2024-03-08 16:17:17,286] multiqc [INFO ] Data : multiqc_data_1 [2024-03-08 16:17:17,286] multiqc [DEBUG ] Moving data file from '/scratch/tmplldpt25e/multiqc_data' to '/projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report/multiqc_data_1' [2024-03-08 16:17:17,933] multiqc [INFO ] MultiQC complete