Module	Section	Sample Name	Source
RSeQC	infer_experiment	G221_M78_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M78/Read_Strandness/G221_M78_Read_Strandness.txt
RSeQC	infer_experiment	G221_M75_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M75/Read_Strandness/G221_M75_Read_Strandness.txt
RSeQC	infer_experiment	G221_M73_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M73/Read_Strandness/G221_M73_Read_Strandness.txt
RSeQC	infer_experiment	G221_M70_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M70/Read_Strandness/G221_M70_Read_Strandness.txt
RSeQC	infer_experiment	G221_M76_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M76/Read_Strandness/G221_M76_Read_Strandness.txt
RSeQC	infer_experiment	G221_M71_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M71/Read_Strandness/G221_M71_Read_Strandness.txt
RSeQC	infer_experiment	G221_M69_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M69/Read_Strandness/G221_M69_Read_Strandness.txt
RSeQC	infer_experiment	G221_M79_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M79/Read_Strandness/G221_M79_Read_Strandness.txt
RSeQC	infer_experiment	G221_M77_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M77/Read_Strandness/G221_M77_Read_Strandness.txt
RSeQC	infer_experiment	G221_M74_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M74/Read_Strandness/G221_M74_Read_Strandness.txt
RSeQC	infer_experiment	G221_M72_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M72/Read_Strandness/G221_M72_Read_Strandness.txt
RSeQC	infer_experiment	G221_M80_Read_Strandness	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M80/Read_Strandness/G221_M80_Read_Strandness.txt
featureCounts	all_sections	G221_M78_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M78/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M78_featureCounts.out.summary
featureCounts	all_sections	G221_M75_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M75/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M75_featureCounts.out.summary
featureCounts	all_sections	G221_M73_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M73/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M73_featureCounts.out.summary
featureCounts	all_sections	G221_M70_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M70/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M70_featureCounts.out.summary
featureCounts	all_sections	G221_M76_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M76/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M76_featureCounts.out.summary
featureCounts	all_sections	G221_M71_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M71/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M71_featureCounts.out.summary
featureCounts	all_sections	G221_M69_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M69/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M69_featureCounts.out.summary
featureCounts	all_sections	G221_M79_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M79/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M79_featureCounts.out.summary
featureCounts	all_sections	G221_M77_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M77/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M77_featureCounts.out.summary
featureCounts	all_sections	G221_M74_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M74/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M74_featureCounts.out.summary
featureCounts	all_sections	G221_M72_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M72/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M72_featureCounts.out.summary
featureCounts	all_sections	G221_M80_sorted	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M80/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M80_featureCounts.out.summary
Samtools	flagstat	statistics_for_primary_unique_reads	/projectnb/wax-es/zzhang/zz_G221/SAMPLES/G221_M80/aligner/statistics_for_primary_unique_reads.txt