[2024-03-11 11:15:57,261] multiqc [DEBUG ] This is MultiQC v1.11 [2024-03-11 11:15:57,262] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-03-11 11:15:57,262] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/zzhang3/.multiqc_config.yaml [2024-03-11 11:15:57,262] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-03-11 11:15:57,264] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-03-11 11:15:57,264] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-03-11 11:15:57,265] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/ [2024-03-11 11:15:57,779] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-03-11 11:15:57,779] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-es/zzhang/zz_G221/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-es/zzhang/zz_G221/SAMPLES /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC/ /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics/ [2024-03-11 11:15:57,779] multiqc [DEBUG ] Working dir : /projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report [2024-03-11 11:15:57,780] multiqc [DEBUG ] Template : default [2024-03-11 11:15:57,780] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-03-11 11:15:57,780] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-03-11 11:15:57,781] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpvpy5_a6e [2024-03-11 11:15:58,152] multiqc [INFO ] Search path : /projectnb/wax-es/zzhang/zz_G221/SAMPLES [2024-03-11 11:15:58,152] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/03_FASTQC [2024-03-11 11:15:58,152] multiqc [INFO ] Search path : /projectnb2/wax-es/zzhang/zz_G221/Scripts/06_CollectMetrics [2024-03-11 11:15:58,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:15:58,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:15:58,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:58,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,399] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,400] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:15:59,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-03-11 11:16:00,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:00,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:00,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:00,516] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,497] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,520] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:01,546] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-03-11 11:16:03,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:03,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:03,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,644] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,701] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:03,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,993] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,993] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,994] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:04,994] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:05,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-03-11 11:16:06,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:06,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:06,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:06,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:07,149] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-03-11 11:16:08,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:08,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:08,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,183] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,183] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,184] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:08,204] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,180] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,186] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,186] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,187] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:09,207] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-03-11 11:16:10,154] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:10,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:10,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,235] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:10,263] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,256] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:11,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-03-11 11:16:12,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:12,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:12,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,361] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:12,384] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:13,417] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-03-11 11:16:14,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:14,459] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:14,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,542] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:14,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,561] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:15,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-03-11 11:16:16,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:16,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:16,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:16,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:17,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-03-11 11:16:18,651] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:18,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:18,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,710] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,710] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:18,733] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,713] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,713] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:19,740] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-03-11 11:16:20,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:20,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:20,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,780] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:20,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,803] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,803] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,803] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,804] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,804] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,804] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:21,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-03-11 11:16:22,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-03-11 11:16:22,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-03-11 11:16:22,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,867] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:22,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:23,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-03-11 11:16:25,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:25,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:25,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:25,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:26,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:26,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:26,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 11:16:26,307] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 11:16:26,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 11:16:26,590] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 11:16:26,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 11:16:26,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 11:16:26,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-03-11 11:16:26,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-11 11:16:26,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-03-11 11:16:27,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:27,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:27,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:27,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:27,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-03-11 11:16:27,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 11:16:27,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 11:16:27,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 11:16:27,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 11:16:27,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-03-11 11:16:27,117] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:27,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:27,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-03-11 11:16:27,131] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 11:16:27,133] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-03-11 11:16:27,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-03-11 11:16:27,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 11:16:28,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 11:16:28,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 11:16:28,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 11:16:28,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-03-11 11:16:28,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 11:16:28,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 11:16:28,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 11:16:28,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 11:16:28,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-03-11 11:16:31,568] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-11 11:16:31,591] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-03-11 11:16:31,594] multiqc [DEBUG ] No samples found: custom_content [2024-03-11 11:16:31,606] multiqc [DEBUG ] No samples found: ccs [2024-03-11 11:16:31,636] multiqc [DEBUG ] No samples found: ngsderive [2024-03-11 11:16:31,646] multiqc [DEBUG ] No samples found: purple [2024-03-11 11:16:31,653] multiqc [DEBUG ] No samples found: conpair [2024-03-11 11:16:31,682] multiqc [DEBUG ] No samples found: lima [2024-03-11 11:16:31,720] multiqc [DEBUG ] No samples found: peddy [2024-03-11 11:16:31,731] multiqc [DEBUG ] No samples found: somalier [2024-03-11 11:16:31,756] multiqc [DEBUG ] No samples found: methylQA [2024-03-11 11:16:31,790] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-03-11 11:16:31,790] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-03-11 11:16:31,790] multiqc [DEBUG ] No samples found: mosdepth [2024-03-11 11:16:31,799] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-03-11 11:16:31,819] multiqc [DEBUG ] No samples found: qualimap [2024-03-11 11:16:31,846] multiqc [DEBUG ] No samples found: preseq [2024-03-11 11:16:31,864] multiqc [DEBUG ] No samples found: quast [2024-03-11 11:16:31,899] multiqc [DEBUG ] No samples found: qorts [2024-03-11 11:16:31,924] multiqc [DEBUG ] No samples found: rna_seqc [2024-03-11 11:16:31,957] multiqc [DEBUG ] No samples found: rockhopper [2024-03-11 11:16:31,989] multiqc [DEBUG ] No samples found: rsem [2024-03-11 11:16:32,045] multiqc.modules.rseqc.rseqc [INFO ] Found 12 infer_experiment reports [2024-03-11 11:16:32,076] multiqc [DEBUG ] No samples found: busco [2024-03-11 11:16:32,083] multiqc [DEBUG ] No samples found: bustools [2024-03-11 11:16:32,111] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-03-11 11:16:32,148] multiqc [DEBUG ] No samples found: gffcompare [2024-03-11 11:16:32,158] multiqc [DEBUG ] No samples found: disambiguate [2024-03-11 11:16:32,193] multiqc [DEBUG ] No samples found: supernova [2024-03-11 11:16:32,278] multiqc [DEBUG ] No samples found: deeptools [2024-03-11 11:16:32,304] multiqc [DEBUG ] No samples found: sargasso [2024-03-11 11:16:32,329] multiqc [DEBUG ] No samples found: verifybamid [2024-03-11 11:16:32,345] multiqc [DEBUG ] No samples found: mirtrace [2024-03-11 11:16:32,355] multiqc [DEBUG ] No samples found: happy [2024-03-11 11:16:32,362] multiqc [DEBUG ] No samples found: mirtop [2024-03-11 11:16:32,391] multiqc [DEBUG ] No samples found: sambamba [2024-03-11 11:16:32,402] multiqc [DEBUG ] No samples found: homer [2024-03-11 11:16:32,436] multiqc [DEBUG ] No samples found: hops [2024-03-11 11:16:32,446] multiqc [DEBUG ] No samples found: macs2 [2024-03-11 11:16:32,452] multiqc [DEBUG ] No samples found: theta2 [2024-03-11 11:16:32,494] multiqc [DEBUG ] No samples found: snpeff [2024-03-11 11:16:32,522] multiqc [DEBUG ] No samples found: gatk [2024-03-11 11:16:32,531] multiqc [DEBUG ] No samples found: htseq [2024-03-11 11:16:32,540] multiqc [DEBUG ] No samples found: bcftools [2024-03-11 11:16:32,559] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted [2024-03-11 11:16:32,560] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted [2024-03-11 11:16:32,562] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2024-03-11 11:16:32,562] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2024-03-11 11:16:32,563] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted [2024-03-11 11:16:32,565] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2024-03-11 11:16:32,566] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2024-03-11 11:16:32,567] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted [2024-03-11 11:16:32,567] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted [2024-03-11 11:16:32,568] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2024-03-11 11:16:32,569] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2024-03-11 11:16:32,569] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted [2024-03-11 11:16:32,569] multiqc.modules.featureCounts.feature_counts [INFO ] Found 12 reports [2024-03-11 11:16:32,632] multiqc [DEBUG ] No samples found: fgbio [2024-03-11 11:16:32,730] multiqc [DEBUG ] No samples found: dragen [2024-03-11 11:16:32,757] multiqc [DEBUG ] No samples found: dedup [2024-03-11 11:16:32,795] multiqc [DEBUG ] No samples found: damageprofiler [2024-03-11 11:16:33,012] multiqc [DEBUG ] No samples found: biobambam2 [2024-03-11 11:16:33,035] multiqc [DEBUG ] No samples found: jcvi [2024-03-11 11:16:33,044] multiqc [DEBUG ] No samples found: mtnucratio [2024-03-11 11:16:33,049] multiqc [DEBUG ] No samples found: picard [2024-03-11 11:16:33,075] multiqc [DEBUG ] No samples found: vep [2024-03-11 11:16:33,099] multiqc [DEBUG ] No samples found: sentieon [2024-03-11 11:16:33,109] multiqc [DEBUG ] No samples found: prokka [2024-03-11 11:16:33,142] multiqc [DEBUG ] No samples found: qc3C [2024-03-11 11:16:33,172] multiqc [DEBUG ] No samples found: nanostat [2024-03-11 11:16:33,181] multiqc [DEBUG ] No samples found: samblaster [2024-03-11 11:16:33,239] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,240] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,241] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,243] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,244] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,244] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,245] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,246] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,246] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,247] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,247] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-03-11 11:16:33,249] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2024-03-11 11:16:33,279] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-03-11 11:16:33,288] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-03-11 11:16:33,297] multiqc [DEBUG ] No samples found: bamtools [2024-03-11 11:16:33,304] multiqc [DEBUG ] No samples found: jellyfish [2024-03-11 11:16:33,314] multiqc [DEBUG ] No samples found: vcftools [2024-03-11 11:16:33,320] multiqc [DEBUG ] No samples found: longranger [2024-03-11 11:16:33,349] multiqc [DEBUG ] No samples found: stacks [2024-03-11 11:16:33,357] multiqc [DEBUG ] No samples found: varscan2 [2024-03-11 11:16:33,378] multiqc [DEBUG ] No samples found: snippy [2024-03-11 11:16:33,449] multiqc [DEBUG ] No samples found: bbmap [2024-03-11 11:16:33,473] multiqc [DEBUG ] No samples found: bismark [2024-03-11 11:16:33,507] multiqc [DEBUG ] No samples found: biscuit [2024-03-11 11:16:33,517] multiqc [DEBUG ] No samples found: hicexplorer [2024-03-11 11:16:33,542] multiqc [DEBUG ] No samples found: hicup [2024-03-11 11:16:33,581] multiqc [DEBUG ] No samples found: hicpro [2024-03-11 11:16:33,590] multiqc [DEBUG ] No samples found: salmon [2024-03-11 11:16:33,597] multiqc [DEBUG ] No samples found: kallisto [2024-03-11 11:16:33,631] multiqc [DEBUG ] No samples found: slamdunk [2024-03-11 11:16:33,670] multiqc [DEBUG ] No samples found: star [2024-03-11 11:16:33,680] multiqc [DEBUG ] No samples found: hisat2 [2024-03-11 11:16:33,715] multiqc [DEBUG ] No samples found: tophat [2024-03-11 11:16:33,742] multiqc [DEBUG ] No samples found: bowtie2 [2024-03-11 11:16:33,751] multiqc [DEBUG ] No samples found: bowtie1 [2024-03-11 11:16:33,786] multiqc [DEBUG ] No samples found: snpsplit [2024-03-11 11:16:33,824] multiqc [DEBUG ] No samples found: odgi [2024-03-11 11:16:33,834] multiqc [DEBUG ] No samples found: pangolin [2024-03-11 11:16:33,842] multiqc [DEBUG ] No samples found: kat [2024-03-11 11:16:33,848] multiqc [DEBUG ] No samples found: leehom [2024-03-11 11:16:33,875] multiqc [DEBUG ] No samples found: adapterRemoval [2024-03-11 11:16:33,890] multiqc [DEBUG ] No samples found: clipandmerge [2024-03-11 11:16:33,916] multiqc [DEBUG ] No samples found: cutadapt [2024-03-11 11:16:33,926] multiqc [DEBUG ] No samples found: flexbar [2024-03-11 11:16:33,935] multiqc [DEBUG ] No samples found: kaiju [2024-03-11 11:16:33,945] multiqc [DEBUG ] No samples found: kraken [2024-03-11 11:16:33,953] multiqc [DEBUG ] No samples found: malt [2024-03-11 11:16:33,986] multiqc [DEBUG ] No samples found: trimmomatic [2024-03-11 11:16:33,996] multiqc [DEBUG ] No samples found: sickle [2024-03-11 11:16:34,019] multiqc [DEBUG ] No samples found: skewer [2024-03-11 11:16:34,028] multiqc [DEBUG ] No samples found: sortmerna [2024-03-11 11:16:34,037] multiqc [DEBUG ] No samples found: biobloomtools [2024-03-11 11:16:34,068] multiqc [DEBUG ] No samples found: fastq_screen [2024-03-11 11:16:34,088] multiqc [DEBUG ] No samples found: afterqc [2024-03-11 11:16:34,126] multiqc [DEBUG ] No samples found: fastp [2024-03-11 11:16:34,148] multiqc [DEBUG ] No samples found: fastqc [2024-03-11 11:16:34,157] multiqc [DEBUG ] No samples found: pychopper [2024-03-11 11:16:34,175] multiqc [DEBUG ] No samples found: pycoqc [2024-03-11 11:16:34,184] multiqc [DEBUG ] No samples found: minionqc [2024-03-11 11:16:34,215] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-03-11 11:16:34,239] multiqc [DEBUG ] No samples found: clusterflow [2024-03-11 11:16:34,277] multiqc [DEBUG ] No samples found: bcl2fastq [2024-03-11 11:16:34,287] multiqc [DEBUG ] No samples found: bclconvert [2024-03-11 11:16:34,308] multiqc [DEBUG ] No samples found: interop [2024-03-11 11:16:34,346] multiqc [DEBUG ] No samples found: ivar [2024-03-11 11:16:34,378] multiqc [DEBUG ] No samples found: flash [2024-03-11 11:16:34,387] multiqc [DEBUG ] No samples found: seqyclean [2024-03-11 11:16:34,395] multiqc [DEBUG ] No samples found: optitype [2024-03-11 11:16:34,403] multiqc [INFO ] Compressing plot data [2024-03-11 11:16:34,411] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2024-03-11 11:16:34,411] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2024-03-11 11:16:34,412] multiqc [INFO ] Report : multiqc_report_2.html [2024-03-11 11:16:34,412] multiqc [INFO ] Data : multiqc_data_2 [2024-03-11 11:16:34,412] multiqc [DEBUG ] Moving data file from '/scratch/tmpvpy5_a6e/multiqc_data' to '/projectnb/wax-es/zzhang/zz_G221/Scripts/14_final_summary/zz_G221_multiqc_report/multiqc_data_2' [2024-03-11 11:16:35,033] multiqc [INFO ] MultiQC complete