# DREME 4.10.0 # command: dreme -v 1 -oc Dynamic_Male-biased_Output/dreme_out -p Dynamic_Male-biased_Output/seqs-centered -n Dynamic_Male-biased_Output/seqs-shuffled -png # host: scc-pg7 # when: Wed Jun 07 10:41:19 EDT 2017 # positives: 846 # from: Dynamic_Male-biased_Output/seqs-centered (Wed Jun 07 10:39:38 EDT 2017) # negatives: 846 # from: Dynamic_Male-biased_Output/seqs-shuffled (Wed Jun 07 10:39:38 EDT 2017) MEME version 4.10.0 ALPHABET= ACGT strands: + - Background letter frequencies (from dataset): A 0.280 C 0.221 G 0.219 T 0.280 MOTIF TCCWRGAA DREME # Word RC Word Pos Neg P-value E-value # BEST TCCWRGAA TTCYWGGA 107 15 9.2e-020 3.1e-015 # TCCTGGAA TTCCAGGA 55 4 3.9e-013 1.3e-008 # TCCAGGAA TTCCTGGA 44 5 2.4e-009 8.1e-005 # TCCTAGAA TTCTAGGA 23 2 8.6e-006 2.9e-001 # TCCAAGAA TTCTTGGA 26 7 5.9e-004 2.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 3.1e-015 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.468468 0.000000 0.000000 0.531532 0.441441 0.000000 0.558559 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCYCAGAA DREME # Word RC Word Pos Neg P-value E-value # BEST TCYCAGAA TTCTGRGA 73 10 8.6e-014 2.9e-009 # TCCCAGAA TTCTGGGA 36 3 1.3e-008 4.4e-004 # TCTCAGAA TTCTGAGA 39 7 6.8e-007 2.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 2.9e-009 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RATCAATA DREME # Word RC Word Pos Neg P-value E-value # BEST RATCAATA TATTGATY 48 2 6.0e-013 2.0e-008 # AATCAATA TATTGATT 27 1 8.9e-008 3.0e-003 # GATCAATA TATTGATC 21 1 4.9e-006 1.6e-001 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 2.0e-008 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CSTGSC DREME # Word RC Word Pos Neg P-value E-value # BEST CSTGSC GSCASG 170 80 3.8e-010 1.3e-005 # CCTGCC GGCAGG 78 38 7.7e-005 2.6e+000 # CCTGGC GCCAGG 85 44 1.1e-004 3.7e+000 # CGTGCC GGCACG 16 2 6.2e-004 2.1e+001 # CGTGGC GCCACG 15 3 3.6e-003 1.2e+002 letter-probability matrix: alength= 4 w= 6 nsites= 191 E= 1.3e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.842932 0.157068 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.455497 0.544503 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CWGGAA DREME # Word RC Word Pos Neg P-value E-value # BEST CWGGAA TTCCWG 203 112 7.9e-009 2.6e-004 # CAGGAA TTCCTG 113 52 3.4e-007 1.1e-002 # CTGGAA TTCCAG 105 67 1.4e-003 4.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 231 E= 2.6e-004 0.000000 1.000000 0.000000 0.000000 0.510823 0.000000 0.000000 0.489177 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTGH DREME # Word RC Word Pos Neg P-value E-value # BEST CTCTGH DCAGAG 269 178 3.3e-007 1.1e-002 # CTCTGT ACAGAG 114 76 2.1e-003 7.0e+001 # CTCTGC GCAGAG 79 48 2.7e-003 8.9e+001 # CTCTGA TCAGAG 103 70 5.0e-003 1.6e+002 letter-probability matrix: alength= 4 w= 6 nsites= 313 E= 1.1e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.348243 0.268371 0.000000 0.383387 MOTIF ACARAYA DREME # Word RC Word Pos Neg P-value E-value # BEST ACARAYA TRTYTGT 110 43 6.9e-009 2.2e-004 # ACAAATA TATTTGT 34 11 3.5e-004 1.1e+001 # ACAAACA TGTTTGT 44 18 5.3e-004 1.7e+001 # ACAGATA TATCTGT 19 6 7.0e-003 2.2e+002 # ACAGACA TGTCTGT 23 9 9.5e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 120 E= 2.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.650000 0.000000 0.350000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.566667 0.000000 0.433333 1.000000 0.000000 0.000000 0.000000 Time 41.41 secs.