Database and Motifs High-scoring Motif Occurrences Debugging Information



FIMO - Motif search tool

FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE Dynamic_Male-biased_Output/Dynamic_Male-biased.fa
Database contains 846 sequences, 423000 residues

MOTIFS ./JASPAR_CORE_2014_vertebrates.meme (nucleotide)

MOTIF WIDTH BEST POSSIBLE MATCH
MA0004.1 6 CACGTG
MA0006.1 6 TGCGTG
MA0009.1 11 CTAGGTGTGAA
MA0017.1 14 TGACCTTTGAACCT
MA0019.1 12 AGATGCAATCCC
MA0025.1 11 TTATGTAACAT
MA0027.1 11 AAGTAGTGTTC
MA0028.1 10 GAGCCGGAAG
MA0029.1 14 AAGATAAGATAATA
MA0030.1 14 CAAACGTAAACAAT
MA0031.1 8 GTAAACAT
MA0032.1 8 GGTAAGTA
MA0033.1 8 TATACATA
MA0038.1 10 CAAATCACTG
MA0040.1 11 TATTGTTTATT
MA0041.1 12 GAATGTTTGTTT
MA0042.1 12 GGATGTTTGTTT
MA0043.1 12 GGTTACGTAATT
MA0046.1 14 GGTTAATAATTAAC
MA0048.1 12 GCGCAGCTGCGT
MA0051.1 18 GGAAAGTGAAAGCAAAAC
MA0056.1 6 TGGGGA
MA0057.1 10 GTAGGGGGAA
MA0059.1 11 GAGCACGTGGT
MA0063.1 7 TTAATTG
MA0066.1 20 GTAGGTCACGGTGACCTACT
MA0067.1 8 AGTCACGG
MA0068.1 30 GAAAAATTTCCAATACTCCACTCCCCCCCC
MA0069.1 14 TTCACGCATGAGTT
MA0070.1 12 CCATCAATCAAA
MA0071.1 10 ATCAAGGTCA
MA0072.1 14 TATAAGTAGGTCAA
MA0073.1 20 CCCCAAACCACCCCCCCCCA
MA0074.1 15 GGGTCATCGAGTTCA
MA0075.1 5 AATTA
MA0077.1 9 CCATTGTTC
MA0078.1 9 TTCATTGTC
MA0081.1 7 AGAGGAA
MA0084.1 9 GTAAACAAT
MA0087.1 7 ATTGTTT
MA0088.1 20 GATTTCCCATAATGCCTTGC
MA0089.1 6 CATGAC
MA0090.1 12 CACATTCCTCCG
MA0091.1 12 CGACCATCTGTT
MA0092.1 10 GGTCTGGCAT
MA0101.1 10 GGGGATTTCC
MA0107.1 10 GGGAATTTCC
MA0108.2 15 GTATAAAAGGCGGGG
MA0109.1 10 AACCTTATAT
MA0111.1 11 AGGGTAACAGC
MA0115.1 17 AAAGGTCAAAGGTCAAC
MA0116.1 15 GGCACCCAGGGGTGC
MA0117.1 8 GCTGACGG
MA0119.1 14 TGGCACCATGCCAA
MA0122.1 9 TTAAGTGGA
MA0124.1 7 ATACTTA
MA0125.1 8 TAATTGGT
MA0130.1 6 ATCCAC
MA0131.1 10 TAACGTCCGC
MA0132.1 6 CTAATT
MA0133.1 7 ACAACAC
MA0135.1 13 AAATTAATTAATC
MA0136.1 9 TACTTCCTT
MA0139.1 19 TGGCCACCAGGGGGCGCTA
MA0142.1 15 CTTTGTTATGCAAAT
MA0149.1 18 GGAAGGAAGGAAGGAAGG
MA0062.2 11 CCGGAAGTGGC
MA0039.2 10 TGGGTGGGGC
MA0138.2 21 TTCAGCACCATGGACAGCGCC
MA0002.2 11 GTCTGTGGTTT
MA0047.2 12 TGTTTACTTAGG
MA0112.2 20 GGCCCAGGTCACCCTGACCT
MA0065.2 15 GTAGGGCAAAGGTCA
MA0151.1 6 ATTAAA
MA0152.1 7 TTTTCCA
MA0153.1 12 TTAATATTTAAC
MA0155.1 12 TGTCAGGGGGCG
MA0156.1 8 CAGGAAAT
MA0157.1 8 TGTAAACA
MA0158.1 8 CACTAATT
MA0159.1 17 AGGTCATGGAGAGGTCA
MA0160.1 8 AAGGTCAC
MA0161.1 6 TTGGCA
MA0163.1 14 GGGGCCCAAGGGGG
MA0164.1 7 CAAGCTT
MA0018.2 8 TGACGTCA
MA0099.2 7 TGACTCA
MA0259.1 8 GGACGTGC
MA0442.1 6 CTTTGT
MA0141.2 12 AGGTCAAGGTCA
MA0145.2 14 CCAGTTCAAACCAG
MA0146.2 14 GGGGCCGAGGCCTG
MA0461.1 8 CAGATGGC
MA0462.1 11 GAAATGACTCA
MA0463.1 14 TTTCCTAGAAAGCA
MA0464.1 11 CTCACGTGCAC
MA0465.1 11 AAGCCATAAAA
MA0466.1 11 TATTGCACAAT
MA0467.1 11 AAGAGGATTAG
MA0468.1 11 TAATTTAATCA
MA0469.1 15 CTCCCGCCCCCACTC
MA0470.1 11 GGGCGGGAAGG
MA0471.1 11 GGGCGGGAAGG
MA0472.1 15 CCCCCGCCCACGCAC
MA0473.1 13 GAACCAGGAAGTG
MA0474.1 11 ACAGGAAGTGG
MA0475.1 11 ACAGGAAGTGG
MA0476.1 11 TGTGACTCATT
MA0477.1 11 GGTGACTCATG
MA0478.1 11 GGATGACTCAT
MA0479.1 11 TCCAATCCACA
MA0480.1 11 TCCTGTTTACA
MA0481.1 15 CAAAAGTAAACAAAG
MA0482.1 11 TCTTATCTCCC
MA0483.1 11 AAATCACAGCA
MA0484.1 15 AGAGTCCAAAGTCCA
MA0485.1 13 GGCCATAAATCAC
MA0486.1 15 CTTCTAGAAGGTTCT
MA0488.1 13 AAGATGATGTCAT
MA0489.1 14 AGGAGATGACTCAT
MA0490.1 11 GGATGACTCAT
MA0491.1 11 GGTGACTCATC
MA0492.1 15 AAAGATGATGTCATC
MA0493.1 11 GGCCACACCCA
MA0494.1 19 TGACCTAAAGTAACCTCTG
MA0495.1 18 GCTGAGTCAGCAATTTTT
MA0496.1 15 CTGAGTCAGCAATTT
MA0497.1 15 ATGCTAAAAATAGAA
MA0498.1 15 AGCTGTCACTCACCT
MA0499.1 13 TGCAGCTGTCCCT
MA0500.1 11 GACAGCTGCAG
MA0501.1 15 ATGACTCAGCAATTT
MA0502.1 15 AAATGGACCAATCAG
MA0503.1 11 AGCCACTCAAG
MA0504.1 15 AGGGGTCAGAGGTCA
MA0505.1 15 AAGTTCAAGGTCAGC
MA0506.1 11 GCGCCTGCGCA
MA0507.1 13 TTCATTTGCATAT
MA0508.1 15 AGAAAGTGAAAGTGA
MA0509.1 14 GTTGCCATGGCAAC
MA0510.1 15 CTCCCTGGCAACAGC
MA0511.1 15 GGGGTTTGTGGTTTG
MA0512.1 11 CAAAGGTCAGA
MA0513.1 13 CTGTCTGTCACCT
MA0514.1 10 CCTTTGTTTT
MA0515.1 10 CCATTGTTTT
MA0516.1 15 GCCCCGCCCCCTCCC
MA0517.1 15 TCAGTTTCATTTTCC
MA0518.1 14 TTTCCAGGAAATGG
MA0519.1 11 ATTTCCAAGAA
MA0520.1 15 CATTTCCTGAGAAAT
MA0521.1 11 AACAGCTGCAG
MA0522.1 11 CACAGCTGCAG
MA0523.1 14 AAAGATCAAAGGAA
MA0524.1 15 CATGGCCCCAGGGCA
MA0525.1 20 AGACATGCCCAGACATGCCC
MA0526.1 11 GTCATGTGACC
MA0527.1 15 CTCTCGCGAGATCTG
MA0528.1 21 GGAGGAGGAGGGGGAGGAGGA
MA0007.2 15 AAGAACAGAATGTTC
MA0102.3 11 ATTGCACAATA
MA0024.2 11 CGGGCGGGAGG
MA0154.2 11 GTCCCCAGGGA
MA0162.2 14 CCCCCGCCCCCGCC
MA0076.2 11 CCACTTCCGGC
MA0258.2 15 AGGTCACCCTGACCT
MA0098.2 15 CCCACTTCCTGTCTC
MA0148.3 15 TCCATGTTTACTTTG
MA0035.3 11 TTCTTATCTGT
MA0036.2 14 AGATTCTTATCTGT
MA0037.2 8 AGATAAGA
MA0114.2 15 CTGGACTTTGGACTC
MA0050.2 21 TTTTACTTTCACTTTCACTTT
MA0058.2 10 AAGCACATGG
MA0052.2 15 AGCTAAAAATAGCAT
MA0100.2 10 CCAACTGCCA
MA0147.2 10 CCATGTGCTT
MA0104.3 8 GCCACGTG
MA0150.2 15 CAGCATGACTCAGCA
MA0105.3 11 GGGAATTTCCC
MA0060.2 18 AGAGTGCTGATTGGTCCA
MA0014.2 19 GAGGGCAGCCAAGCGTGAC
MA0080.3 15 AAAAAGAGGAAGTGA
MA0143.3 8 CCTTTGTT
MA0079.3 11 GCCCCGCCCCC
MA0083.2 18 CATGCCCAAATAAGGCAA
MA0137.3 11 TTTCCAGGAAA
MA0144.2 11 CTTCTGGGAAA
MA0140.2 18 CTTATCTGTGAGGAGCAG
MA0003.2 15 CATTGCCTCAGGGCA
MA0106.2 15 ACATGCCCAGACATG
MA0093.2 11 GCCACGTGACC
MA0095.2 12 CAAGATGGCGGC
MA0103.2 9 CCTCACCTG
MA0591.1 15 AGGATGACTCAGCAC
MA0592.1 11 CCAAGGTCACA
MA0593.1 11 AAGTAAACAAA
MA0594.1 11 GCCATAAATCA
MA0595.1 10 ATCACCCCAC
MA0596.1 10 ATGGGGTGAT
MA0597.1 9 CTGCCCGCA
MA0598.1 8 CCTTCCTG
MA0599.1 10 GCCCCGCCCC
MA0600.1 19 GTTGCCATGGCAACCGCGG
MA0113.2 15 AGAACAGAATGTTCT

Random model letter frequencies (from Dynamic_Male-biased_Output/background):
A 0.282 C 0.218 G 0.218 T 0.282


SECTION I: HIGH-SCORING MOTIF OCCURRENCES

Motif Sequence Name Strand Start End p-value q-value Matched Sequence
MA0466.1 chr3 + 133403586 133403596 7.32e-07 0.154 TATTGCACAAT
MA0466.1 chr4 + 125851193 125851203 7.32e-07 0.154 TATTGCACAAT
MA0466.1 chr8 + 63045918 63045928 7.32e-07 0.154 GATTGCACAAT
MA0466.1 chr2 + 102894603 102894613 1.3e-06 0.154 GATTGCACCAT
MA0466.1 chr1 104414743 104414753 1.87e-06 0.154 TATTGCACAAC
MA0466.1 chr17 + 29606664 29606674 1.87e-06 0.154 GATTGCACAAC
MA0466.1 chr17 + 70310420 70310430 1.87e-06 0.154 TATTGCACAAC
MA0466.1 chr8 56010521 56010531 1.87e-06 0.154 TATTGCACAAC
MA0466.1 chrX + 108739978 108739988 1.87e-06 0.154 GATTGCACAAC
MA0466.1 chrX + 138951250 138951260 1.87e-06 0.154 TATTGCACAAC
MA0466.1 chr3 + 148896812 148896822 2.31e-06 0.173 GATTGCACCAC
MA0466.1 chr18 59282912 59282922 3.25e-06 0.179 GATTGCATAAT
MA0466.1 chr2 + 134539194 134539204 3.25e-06 0.179 TATTGCATAAT
MA0466.1 chr2 143702579 143702589 3.25e-06 0.179 TATTGCATAAT
MA0466.1 chr3 59945222 59945232 3.25e-06 0.179 GATTGCATAAT
MA0466.1 chr10 + 92718386 92718396 3.98e-06 0.194 GATTGCATCAT
MA0466.1 chr5 96735485 96735495 3.98e-06 0.194 TATTGCATCAT
MA0466.1 chr6 100579178 100579188 4.72e-06 0.217 GATTGCATAAC
MA0466.1 chr7 47120206 47120216 5.28e-06 0.23 GATTGCATCAC
MA0466.1 chr9 122266395 122266405 6.58e-06 0.264 AATTGCACAAT
MA0466.1 chr11 5280557 5280567 8.03e-06 0.264 TGTTGCACAAC
MA0466.1 chr4 107796719 107796729 8.03e-06 0.264 TGTTGCACAAC
MA0466.1 chr6 + 147593073 147593083 8.03e-06 0.264 TGTTGCACAAC
MA0466.1 chr2 169979189 169979199 8.6e-06 0.264 AATTGCACAAC
MA0466.1 chr3 + 51815394 51815404 8.6e-06 0.264 CATTGCACAAC
MA0466.1 chr10 + 8671058 8671068 9.88e-06 0.264 TATTTCACAAT
MA0466.1 chr10 + 8671143 8671153 9.88e-06 0.264 GATTTCACAAT
MA0466.1 chr11 46378289 46378299 9.88e-06 0.264 GATTTCACAAT
MA0466.1 chr11 + 86427561 86427571 9.88e-06 0.264 TATTTCACAAT
MA0466.1 chr12 70965189 70965199 9.88e-06 0.264 TATTTCACAAT
MA0466.1 chr7 94519986 94519996 9.88e-06 0.264 GATTTCACAAT
MA0466.1 chr1 104414798 104414808 1.26e-05 0.303 AATTGCATAAT
MA0466.1 chr16 10676945 10676955 1.26e-05 0.303 CATTGCATAAT
MA0466.1 chr11 8469755 8469765 1.33e-05 0.303 GATTTCACCAT
MA0466.1 chr11 + 23041182 23041192 1.46e-05 0.303 GATTTCACAAC
MA0466.1 chr13 + 24470255 24470265 1.46e-05 0.303 GATTTCACAAC
MA0466.1 chr19 + 34387754 34387764 1.46e-05 0.303 GATTTCACAAC
MA0466.1 chr8 + 56010555 56010565 1.46e-05 0.303 GATTTCACAAC
MA0466.1 chr5 45968147 45968157 1.63e-05 0.303 TGTTGCATAAC
MA0466.1 chr1 + 40299854 40299864 1.75e-05 0.303 AATTGCATAAC
MA0466.1 chr8 + 63046075 63046085 1.75e-05 0.303 AATTGCATAAC
MA0466.1 chr1 138428101 138428111 1.85e-05 0.303 TATTGCAAAAT
MA0466.1 chr2 134370342 134370352 1.85e-05 0.303 TATTGCAAAAT
MA0466.1 chr3 + 98491732 98491742 1.85e-05 0.303 TATTGCAAAAT
MA0466.1 chr7 87801533 87801543 1.85e-05 0.303 TATTGCAAAAT
MA0466.1 chr8 + 107351059 107351069 1.85e-05 0.303 TATTGCAAAAT
MA0466.1 chr10 47302250 47302260 1.9e-05 0.303 TATTTCACCAC
MA0466.1 chr1 176697067 176697077 1.98e-05 0.303 TATTGCTCAAT
MA0466.1 chr11 8138555 8138565 1.98e-05 0.303 TATTGCTCAAT
MA0466.1 chr14 75637232 75637242 1.98e-05 0.303 TATTGCTCAAT
MA0466.1 chr14 + 103863189 103863199 1.98e-05 0.303 GATTGCTCAAT
MA0466.1 chr15 + 6392537 6392547 1.98e-05 0.303 GATTGCTCAAT
MA0466.1 chr6 + 15843670 15843680 1.98e-05 0.303 TATTGCTCAAT
MA0466.1 chr8 + 79580311 79580321 1.98e-05 0.303 TATTGCTCAAT
MA0466.1 chr10 + 47302399 47302409 2.14e-05 0.311 TATTTCATAAT
MA0466.1 chr13 105879504 105879514 2.14e-05 0.311 GATTTCATAAT
MA0466.1 chr5 + 123470554 123470564 2.14e-05 0.311 TATTTCATAAT
MA0466.1 chr1 23487725 23487735 2.23e-05 0.313 AATTGCATCAC
MA0466.1 chr4 57298001 57298011 2.23e-05 0.313 CATTGCATCAC
MA0466.1 chr6 + 53946747 53946757 2.31e-05 0.313 TATTGCAACAT
MA0466.1 chr9 + 74641384 74641394 2.31e-05 0.313 GATTGCAACAT
MA0466.1 chr1 133837705 133837715 2.36e-05 0.313 TATTGCTCCAT
MA0466.1 chr11 + 79374159 79374169 2.42e-05 0.313 GCTTGCACAAT
MA0466.1 chr12 + 105583965 105583975 2.42e-05 0.313 GCTTGCACAAT
MA0466.1 chr10 47302456 47302466 2.57e-05 0.317 GATTGCAAAAC
MA0466.1 chr8 + 116633805 116633815 2.57e-05 0.317 GATTGCAAAAC
MA0466.1 chr7 + 126702871 126702881 2.66e-05 0.317 TATTTCATCAT
MA0466.1 chr8 + 47447785 47447795 2.66e-05 0.317 TATTTCATCAT
MA0466.1 chr9 9213199 9213209 2.66e-05 0.317 GATTTCATCAT
MA0466.1 chr3 + 18167527 18167537 2.77e-05 0.317 CGTTGCACAAT
MA0466.1 chr3 143773891 143773901 2.77e-05 0.317 TATTGCCCAAT
MA0466.1 chr15 + 58974177 58974187 2.83e-05 0.317 GATTGCTCAAC
MA0466.1 chr7 + 138594009 138594019 2.83e-05 0.317 TATTGCTCAAC
MA0466.1 chr5 + 135102831 135102841 2.92e-05 0.317 GATTTCATAAC
MA0466.1 chr7 + 112739345 112739355 2.97e-05 0.317 TCTTGCACCAT
MA0466.1 chr3 + 58312372 58312382 3.08e-05 0.317 GATTGCAACAC
MA0466.1 chr11 112582266 112582276 3.17e-05 0.317 GATTGCCCCAT
MA0466.1 chr8 + 46324915 46324925 3.17e-05 0.317 TATTGCCCCAT
MA0466.1 chr11 + 16645088 16645098 3.21e-05 0.317 TATTGCTCCAC
MA0466.1 chr9 + 74698898 74698908 3.21e-05 0.317 GATTGCTCCAC
MA0466.1 chr10 + 24081492 24081502 3.39e-05 0.317 TATTTCATCAC
MA0466.1 chr15 66441030 66441040 3.39e-05 0.317 GATTTCATCAC
MA0466.1 chr18 + 59377665 59377675 3.39e-05 0.317 GATTTCATCAC
MA0466.1 chr2 + 147386608 147386618 3.39e-05 0.317 GATTTCATCAC
MA0466.1 chr3 + 97792201 97792211 3.39e-05 0.317 TATTTCATCAC
MA0466.1 chr9 112731955 112731965 3.39e-05 0.317 TATTTCATCAC
MA0466.1 chr18 + 33722442 33722452 3.48e-05 0.317 AGTTGCACAAC
MA0466.1 chr2 + 106493605 106493615 3.48e-05 0.317 AGTTGCACAAC
MA0466.1 chr2 161191746 161191756 3.48e-05 0.317 GATTGCCCAAC
MA0466.1 chr4 + 96773722 96773732 3.57e-05 0.317 TATTGCTTAAT
MA0466.1 chr7 87801547 87801557 3.57e-05 0.317 TATTGCTTAAT
MA0466.1 chr12 + 101097101 101097111 3.72e-05 0.317 TGTTTCACAAT
MA0466.1 chr17 + 85132010 85132020 3.72e-05 0.317 TGTTTCACAAT
MA0466.1 chr3 + 18329115 18329125 3.72e-05 0.317 TGTTTCACAAT
MA0466.1 chr5 91416608 91416618 3.72e-05 0.317 GGTTTCACAAT
MA0466.1 chr13 + 3765406 3765416 3.79e-05 0.317 GATTGCCCCAC
MA0466.1 chr11 + 86427543 86427553 3.96e-05 0.317 CATTTCACAAT
MA0466.1 chr12 + 70520313 70520323 3.96e-05 0.317 GATTGCTTCAT
MA0466.1 chr13 + 34204352 34204362 3.96e-05 0.317 AATTTCACAAT
MA0466.1 chr14 103863056 103863066 3.96e-05 0.317 CATTTCACAAT
MA0466.1 chr3 + 145486922 145486932 3.96e-05 0.317 CATTTCACAAT
MA0466.1 chr6 22440931 22440941 3.96e-05 0.317 GATTGCTTCAT
MA0466.1 chr9 + 122266376 122266386 3.96e-05 0.317 CATTTCACAAT
MA0466.1 chr10 106795969 106795979 4.03e-05 0.317 TCTTGCATAAT
MA0466.1 chr6 149293066 149293076 4.03e-05 0.317 GCTTGCATAAT
MA0466.1 chr10 88860787 88860797 4.29e-05 0.324 GATTGCTTAAC
MA0466.1 chr18 + 33352537 33352547 4.29e-05 0.324 TATTGCTTAAC
MA0466.1 chr2 134367892 134367902 4.29e-05 0.324 TATTGCTTAAC
MA0466.1 chr8 + 42196224 42196234 4.29e-05 0.324 GATTGCTTAAC
MA0466.1 chr17 + 85132108 85132118 4.35e-05 0.324 GGTTTCACCAT
MA0466.1 chr2 + 43998395 43998405 4.35e-05 0.324 TGTTTCACCAT
MA0466.1 chr14 23610475 23610485 4.48e-05 0.324 AATTTCACCAT
MA0466.1 chr5 121026227 121026237 4.48e-05 0.324 AATTTCACCAT
MA0466.1 chr6 + 24158093 24158103 4.48e-05 0.324 CATTTCACCAT
MA0466.1 chr10 + 10565038 10565048 4.54e-05 0.324 GCTTGCATCAT
MA0466.1 chr3 + 18167656 18167666 4.54e-05 0.324 TCTTGCATCAT
MA0466.1 chr10 94615457 94615467 4.59e-05 0.325 TGTTTCACAAC
MA0466.1 chr2 67807233 67807243 4.84e-05 0.336 GATTGCCTCAT
MA0466.1 chr7 + 146094078 146094088 4.84e-05 0.336 GATTGCCTCAT
MA0466.1 chr17 8470199 8470209 4.97e-05 0.339 GATTGCTTCAC
MA0466.1 chr6 + 53946773 53946783 4.97e-05 0.339 CATTTCACAAC
MA0466.1 chr4 + 104512906 104512916 5.12e-05 0.345 GATTGCACAAG
MA0466.1 chr7 105673583 105673593 5.12e-05 0.345 GATTGCACAAG
MA0466.1 chr14 73534051 73534061 5.27e-05 0.349 GATTGCCTAAC
MA0466.1 chr2 + 106493591 106493601 5.27e-05 0.349 CGTTGCATAAC
MA0466.1 chr14 + 40078503 40078513 5.34e-05 0.351 TGTTGCAAAAT
MA0466.1 chr4 52828672 52828682 5.66e-05 0.365 CATTGCAAAAT
MA0466.1 chr8 + 130861041 130861051 5.66e-05 0.365 TGTTGCTCAAT
MA0466.1 chr18 + 81518579 81518589 5.83e-05 0.368 AATTGCTCAAT
MA0466.1 chr2 134480839 134480849 5.83e-05 0.368 CATTGCTCAAT
MA0466.1 chr15 66876933 66876943 5.88e-05 0.368 GATTGCACCAG
MA0466.1 chr10 23974673 23974683 5.97e-05 0.368 TGTTTCATAAT
MA0466.1 chr10 121751043 121751053 6.04e-05 0.368 TATTACACAAC
MA0466.1 chr5 96735546 96735556 6.04e-05 0.368 TATTACACAAC
MA0466.1 chr10 + 98129101 98129111 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr14 + 77131557 77131567 6.41e-05 0.368 TATTTCGCAAT
MA0466.1 chr15 87060992 87061002 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr18 60368724 60368734 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr18 60392785 60392795 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr2 + 134582014 134582024 6.41e-05 0.368 CATTTCATAAT
MA0466.1 chr3 18198978 18198988 6.41e-05 0.368 GGTTGCAACAT
MA0466.1 chr3 145487085 145487095 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr4 + 11162604 11162614 6.41e-05 0.368 AATTTCATAAT
MA0466.1 chr7 + 27857786 27857796 6.41e-05 0.368 CATTTCATAAT
MA0466.1 chr2 + 134370474 134370484 6.56e-05 0.368 GGTTGCTCCAT
MA0466.1 chr5 77532037 77532047 6.56e-05 0.368 CATTGCAACAT
MA0466.1 chr6 27776219 27776229 6.56e-05 0.368 AATTGCAACAT
MA0466.1 chr17 43447444 43447454 6.67e-05 0.368 CATTGCTCCAT
MA0466.1 chr3 80814057 80814067 6.67e-05 0.368 GGTTGCGTAAT
MA0466.1 chr1 + 90645811 90645821 6.73e-05 0.368 TGTTGCAAAAC
MA0466.1 chr1 + 133837611 133837621 6.86e-05 0.368 CCTTGCACAAT
MA0466.1 chr10 + 47372353 47372363 6.86e-05 0.368 CCTTGCACAAT
MA0466.1 chr2 73809571 73809581 6.86e-05 0.368 GGTTTCATCAT
MA0466.1 chr6 + 27776439 27776449 6.86e-05 0.368 TGTTTCATCAT
MA0466.1 chr14 66335216 66335226 7.03e-05 0.375 GATTACACCAC
MA0466.1 chr14 51713502 51713512 7.15e-05 0.375 CATTGCAAAAC
MA0466.1 chr1 + 13797989 13797999 7.3e-05 0.375 AATTTCATCAT
MA0466.1 chr13 + 32285342 32285352 7.3e-05 0.375 AATTTCATCAT
MA0466.1 chr13 + 114877028 114877038 7.3e-05 0.375 AATTTCATCAT
MA0466.1 chr2 67807257 67807267 7.3e-05 0.375 CATTTCATCAT
MA0466.1 chr18 21129644 21129654 7.36e-05 0.375 AATTGCCCAAT
MA0466.1 chr18 + 64692739 64692749 7.42e-05 0.375 AATTGCTCAAC
MA0466.1 chr4 96769641 96769651 7.42e-05 0.375 AATTGCTCAAC
MA0466.1 chr10 + 94615533 94615543 7.49e-05 0.375 GGTTTCATAAC
MA0466.1 chr10 110752304 110752314 7.49e-05 0.375 GGTTTCATAAC
MA0466.1 chr3 143773857 143773867 7.61e-05 0.375 TATTACATAAT
MA0466.1 chr5 + 102993067 102993077 7.61e-05 0.375 TATTACATAAT
MA0466.1 chr6 + 23997079 23997089 7.61e-05 0.375 TATTACATAAT
MA0466.1 chr1 40244911 40244921 7.85e-05 0.382 AATTTCATAAC
MA0466.1 chr6 + 29770483 29770493 7.85e-05 0.382 CATTTCATAAC
MA0466.1 chr2 + 67817764 67817774 8.02e-05 0.383 TATTTCAAAAT
MA0466.1 chr4 149708504 149708514 8.02e-05 0.383 GATTTCAAAAT
MA0466.1 chr6 15843659 15843669 8.02e-05 0.383 TATTTCAAAAT
MA0466.1 chr14 + 21782337 21782347 8.27e-05 0.389 TATTGCATAAG
MA0466.1 chr7 + 31773713 31773723 8.27e-05 0.389 CATTGCAACAC
MA0466.1 chr14 + 18557815 18557825 8.37e-05 0.389 TATTTCTCAAT
MA0466.1 chr2 134367732 134367742 8.37e-05 0.389 TATTTCTCAAT
MA0466.1 chr7 19603359 19603369 8.37e-05 0.389 GATTTCTCAAT
MA0466.1 chr4 + 107799278 107799288 8.41e-05 0.389 AATTGCCCCAT
MA0466.1 chr16 + 10649060 10649070 8.6e-05 0.39 CCTTGCACAAC
MA0466.1 chr16 87636491 87636501 8.6e-05 0.39 CCTTGCACAAC
MA0466.1 chr14 40078831 40078841 8.78e-05 0.39 TATTACATCAT
MA0466.1 chr16 43298262 43298272 8.78e-05 0.39 CATTGCGTAAC
MA0466.1 chr18 + 76131001 76131011 8.78e-05 0.39 GATTACATCAT
MA0466.1 chr3 14840932 14840942 8.78e-05 0.39 TGTTGCCCAAC
MA0466.1 chr4 107796896 107796906 8.78e-05 0.39 GATTACATCAT
MA0466.1 chr14 77131558 77131568 8.93e-05 0.39 GATTGCGAAAT
MA0466.1 chr15 3558245 3558255 8.93e-05 0.39 TGTTGCTTAAT
MA0466.1 chr16 43328526 43328536 8.93e-05 0.39 TGTTGCTTAAT
MA0466.1 chr1 191935652 191935662 9.19e-05 0.39 CATTGCCCAAC
MA0466.1 chr15 38277797 38277807 9.19e-05 0.39 GATTTCAACAT
MA0466.1 chr16 + 45986677 45986687 9.19e-05 0.39 AATTGCCCAAC
MA0466.1 chr17 + 84720126 84720136 9.19e-05 0.39 AATTGCCCAAC
MA0466.1 chr3 + 15201537 15201547 9.19e-05 0.39 CATTGCCCAAC
MA0466.1 chr1 176850722 176850732 9.28e-05 0.39 CATTGCTTAAT
MA0466.1 chr10 + 47373656 47373666 9.28e-05 0.39 CATTGCTTAAT
MA0466.1 chr11 115889346 115889356 9.28e-05 0.39 AATTGCTTAAT
MA0466.1 chr16 14950859 14950869 9.41e-05 0.393 TATTTCTCCAT
MA0466.1 chr15 3670822 3670832 9.5e-05 0.395 GATTACATAAC
MA0466.1 chr5 + 104803430 104803440 9.61e-05 0.395 GCTTTCACAAT
MA0466.1 chr13 100436974 100436984 9.71e-05 0.395 GATTTCGTAAT
MA0466.1 chr1 + 23488110 23488120 9.84e-05 0.395 TATTTCAAAAC
MA0466.1 chr17 + 63360338 63360348 9.84e-05 0.395 TATTTCAAAAC
MA0466.1 chr2 134581960 134581970 9.84e-05 0.395 TATTTCAAAAC
MA0466.1 chr3 + 58312547 58312557 9.84e-05 0.395 GATTTCAAAAC
MA0466.1 chr3 + 133403543 133403553 9.84e-05 0.395 GATTTCAAAAC
MA0466.1 chr13 4050377 4050387 9.91e-05 0.396 GGTTGCCCCAC

DEBUGGING INFORMATION

Command line:

/share/pkg/meme/4.10.0_4/install/bin/fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Male-biased_Output/fimo_out_6 --bgfile Dynamic_Male-biased_Output/background --motif MA0466.1 ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Male-biased_Output/Dynamic_Male-biased.fa

Settings:

output directory = Dynamic_Male-biased_Output/fimo_out_6 MEME file name = ./JASPAR_CORE_2014_vertebrates.meme sequence file name = Dynamic_Male-biased_Output/Dynamic_Male-biased.fa
background file name = Dynamic_Male-biased_Output/background allow clobber = true compute q-values = true
parse genomic coord. = true text only = false scan both strands = true
max sequence length = 250000000 output threshold = 0.0001 threshold type = p-value
max stored scores = 100000 pseudocount = 0.1 verbosity = 1
selected motif = MA0466.1

This information can be useful in the event you wish to report a problem with the FIMO software.


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