******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= Dynamic_Male-biased_Output/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:129796001-129796101 1.0000 100 chr18:12713800-12713900 1.0000 100 chr7:20333148-20333248 1.0000 100 chr15:52994574-52994674 1.0000 100 chr2:134538983-134539083 1.0000 100 chr1:23327855-23327955 1.0000 100 chr12:41300629-41300729 1.0000 100 chrX:18674392-18674492 1.0000 100 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1.0000 100 chr15:36349587-36349687 1.0000 100 chr11:70758972-70759072 1.0000 100 chr11:98425206-98425306 1.0000 100 chr1:4660646-4660746 1.0000 100 chr5:102992953-102993053 1.0000 100 chr2:169978834-169978934 1.0000 100 chr12:105234874-10523497 1.0000 100 chr11:48712347-48712447 1.0000 100 chr14:11346455-11346555 1.0000 100 chr9:31786218-31786318 1.0000 100 chr11:8469301-8469401 1.0000 100 chr13:8698890-8698990 1.0000 100 chr5:13844263-13844363 1.0000 100 chr8:47567156-47567256 1.0000 100 chr5:91323156-91323256 1.0000 100 chr17:78806628-78806728 1.0000 100 chr18:13383893-13383993 1.0000 100 chr9:108281635-108281735 1.0000 100 chr10:94727252-94727352 1.0000 100 chr14:121636805-12163690 1.0000 100 chr11:5398919-5399019 1.0000 100 chr11:86442828-86442928 1.0000 100 chr3:67480896-67480996 1.0000 100 chr6:51957657-51957757 1.0000 100 chr9:122765817-122765917 1.0000 100 chr5:151821392-151821492 1.0000 100 chr12:36272527-36272627 1.0000 100 chr17:85131950-85132050 1.0000 100 chr12:25797521-25797621 1.0000 100 chr13:52163752-52163852 1.0000 100 chr15:36913292-36913392 1.0000 100 chr10:23473666-23473766 1.0000 100 chr9:66444117-66444217 1.0000 100 chr8:107350800-107350900 1.0000 100 chr1:8044705-8044805 1.0000 100 chr14:75194700-75194800 1.0000 100 chr16:28999649-28999749 1.0000 100 chr2:112433618-112433718 1.0000 100 chr9:67669962-67670062 1.0000 100 chr9:74698458-74698558 1.0000 100 chr9:74550086-74550186 1.0000 100 chr4:144573831-144573931 1.0000 100 chr10:24081156-24081256 1.0000 100 chr4:120857101-120857201 1.0000 100 chr5:146055385-146055485 1.0000 100 chr11:60796347-60796447 1.0000 100 chr10:106795614-10679571 1.0000 100 chr18:12714416-12714516 1.0000 100 chr10:88860669-88860769 1.0000 100 chr14:18557702-18557802 1.0000 100 chr6:139920151-139920251 1.0000 100 chr1:35983154-35983254 1.0000 100 chr13:63649897-63649997 1.0000 100 chr14:73558978-73559078 1.0000 100 chr6:29721014-29721114 1.0000 100 chr10:87258421-87258521 1.0000 100 chr4:137457872-137457972 1.0000 100 chr11:23041039-23041139 1.0000 100 chr18:7657762-7657862 1.0000 100 chr5:49451211-49451311 1.0000 100 chr9:112731490-112731590 1.0000 100 chr3:145486599-145486699 1.0000 100 chr16:20109512-20109612 1.0000 100 chr6:72550166-72550266 1.0000 100 chr8:37382547-37382647 1.0000 100 chr16:10664198-10664298 1.0000 100 chr10:106782731-10678283 1.0000 100 chr8:42195997-42196097 1.0000 100 chr3:143773428-143773528 1.0000 100 chr6:100281488-100281588 1.0000 100 chr8:101484618-101484718 1.0000 100 chr13:34204168-34204268 1.0000 100 chr3:69165997-69166097 1.0000 100 chr1:189068651-189068751 1.0000 100 chr1:133818570-133818670 1.0000 100 chr12:105230663-10523076 1.0000 100 chr10:47373601-47373701 1.0000 100 chr1:40244710-40244810 1.0000 100 chr2:43364879-43364979 1.0000 100 chr1:60903630-60903730 1.0000 100 chr6:57597140-57597240 1.0000 100 chr13:51952520-51952620 1.0000 100 chr8:97723842-97723942 1.0000 100 chr6:143191618-143191718 1.0000 100 chr16:87628014-87628114 1.0000 100 chr16:24084034-24084134 1.0000 100 chr18:60392735-60392835 1.0000 100 chr6:149116424-149116524 1.0000 100 chr12:105324685-10532478 1.0000 100 chr15:4677206-4677306 1.0000 100 chr1:58128232-58128332 1.0000 100 chr15:66912511-66912611 1.0000 100 chr12:78157738-78157838 1.0000 100 chr6:29770304-29770404 1.0000 100 chr13:104392103-10439220 1.0000 100 chr13:41908578-41908678 1.0000 100 chr13:102488718-10248881 1.0000 100 chr1:157474827-157474927 1.0000 100 chr19:44046642-44046742 1.0000 100 chr11:16603094-16603194 1.0000 100 chr2:8045771-8045871 1.0000 100 chr7:47119877-47119977 1.0000 100 chr9:102884097-102884197 1.0000 100 chr8:73088598-73088698 1.0000 100 chr11:80260429-80260529 1.0000 100 chr6:141539206-141539306 1.0000 100 chr2:143702295-143702395 1.0000 100 chr18:3423730-3423830 1.0000 100 chr5:123540847-123540947 1.0000 100 chr3:10128984-10129084 1.0000 100 chr15:66440968-66441068 1.0000 100 chr1:82154910-82155010 1.0000 100 chr6:94499297-94499397 1.0000 100 chr3:133403342-133403442 1.0000 100 chr10:94615187-94615287 1.0000 100 chr6:67387841-67387941 1.0000 100 chr13:75504365-75504465 1.0000 100 chr2:143987022-143987122 1.0000 100 chr3:97792114-97792214 1.0000 100 chr2:147386453-147386553 1.0000 100 chr3:82819110-82819210 1.0000 100 chr19:12140911-12141011 1.0000 100 chr2:4922292-4922392 1.0000 100 chr14:70722627-70722727 1.0000 100 chr16:23317978-23318078 1.0000 100 chr1:60883902-60884002 1.0000 100 chr2:50187296-50187396 1.0000 100 chr2:63348603-63348703 1.0000 100 chr8:120239701-120239801 1.0000 100 chr2:147789466-147789566 1.0000 100 chr13:24444990-24445090 1.0000 100 chr10:26732774-26732874 1.0000 100 chr12:8096291-8096391 1.0000 100 chr9:67672243-67672343 1.0000 100 chr17:84719862-84719962 1.0000 100 chr18:47473024-47473124 1.0000 100 chr4:97599818-97599918 1.0000 100 chr12:105312378-10531247 1.0000 100 chr8:46324797-46324897 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme Dynamic_Male-biased_Output/seqs-sampled -oc Dynamic_Male-biased_Output/meme_out -dna -mod anr -nmotifs 3 -minw 6 -maxw 30 -bfile Dynamic_Male-biased_Output/background -revcomp -nostatus model: mod= anr nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 strands: + - sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.280 C 0.220 G 0.220 T 0.280 Background letter frequencies (from Dynamic_Male-biased_Output/background): A 0.282 C 0.218 G 0.218 T 0.282 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 47 llr = 580 E-value = 1.5e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::3:::1:111:22::31:: pos.-specific C 1:::::1:1::1:1:312:1: probability G :6:214:3:513:313:2:51 matrix T 939595969485947493949 bits 2.2 2.0 1.8 1.5 * * Relative 1.3 * * * * * * Entropy 1.1 * * * * * * * * * (17.8 bits) 0.9 *** *** * * * * * * 0.7 *** ******* * * * *** 0.4 *********** * *** *** 0.2 ***************** *** 0.0 --------------------- Multilevel TGTTTTTTTGTTTTTTTTTGT consensus T A G G T G GAC A T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr12:37957671-37957771 + 39 2.86e-10 ATTTGTATGG TGTTTTTTTTTTTTTTTTTTT TTTTGATTAA chr4:130272386-130272486 + 5 5.92e-10 TGTT TGTTTTTTTTTTTGTTTGTTT AATTGACCCT chr15:86254386-86254486 + 15 1.11e-09 CCAGGGTTTT TGTTTTTTTGGTTTTGTTTGT ATTTTTTATA chr16:92965618-92965718 + 64 1.35e-09 TGTGTGTGTG TGTGTGTGTGTTTGTGTGTGT GTGACTGATC chr16:92965618-92965718 + 30 2.35e-09 AATTCTCGTG TGTATGTGTGTGTGTGTGTGT GTGTGTGTGT chr10:41296094-41296194 + 34 2.80e-09 TTTATTTTAG TGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr7:122937745-122937845 - 17 3.96e-09 TTGCCAAGGT TTTTTGTGTGTGTGTGTATGT GTGAGAGAAA chr13:16138588-16138688 - 73 1.57e-08 GTTTTTC TGTTTGTTTGATTATTTTTGT TTGTTTGGGG chr15:4677206-4677306 + 21 1.80e-08 AGACTATCAG TGTTTTTTTGTCTTTCTTTTG AATTAAGAAA chr19:44046642-44046742 + 11 4.00e-08 TTGTTTTATC TGTATTTGTGTGTGGGTATGT GCTGTCTGCA chr18:59377343-59377443 + 40 4.00e-08 GATTTTAAGT TTTATTTATGTTTGTTTATTT CCTGGATATG chr10:41296094-41296194 + 64 5.14e-08 TGTGTGTGTG TGTGTGTGTGTGTAAGTGTGT GTCTGGTATG chr17:78806628-78806728 - 61 6.57e-08 TCCAGGATGA CTTTTTTTTTTTTTTTTTTTT AAACAAACAG chr18:81466430-81466530 + 51 9.39e-08 GGCAGCCACA TCTTTGTTTGTTTTTCTTTCT AATCTCTGAC chr9:79644162-79644262 - 4 1.48e-07 GGGTTTCTTT TGTTTGTTTTTGTTCTTATTT TTA chr15:54878214-54878314 - 17 2.54e-07 GAGTGTGTTT TGTTTGCATGTATGTCTGTGT ATGACATGCA chr1:176695553-176695653 + 70 2.54e-07 TGTAAGGGCC TGTATTTGTTTATTGTTTTTT TTTTGGACTT chr5:22964593-22964693 + 38 4.25e-07 GCTGTGCATG TGATTGCTTGTGTTTTTCTGT AATGATCTCT chr3:18154346-18154446 + 32 4.69e-07 TTTCTGAACA TTTGTGTGTATTTCTGTGTGT TATTATACTT chr15:38277348-38277448 + 47 4.69e-07 ATCATTAATT TGCTGTTTTGTTTTTTTCTTT AATAGCATAA chr6:149173379-149173479 - 10 5.18e-07 TAATGTTAGT TGTTTTGTTGTTGTTGTTTTT AGACAGTGT chr9:45918584-45918684 - 9 6.29e-07 TTGTCACTTC TGTTTTCTTTTTTGATTTATT TGAGATAA chr3:98450035-98450135 + 71 6.29e-07 TCAGTGTTCA TGTTTGTTTGGGAGTCTCTTT ATCTTAGCT chr15:67174774-67174874 - 65 8.35e-07 ATTTGTTGCA TTTTTTTTTGGTTCTTCCTGT GGCTCAGAGC chr17:33072205-33072305 - 39 1.01e-06 AACATAAATT TTTATTTTTAGTTGGTTTTGT AAATGTTACC chr8:10012218-10012318 + 80 1.21e-06 TGAACCCTGC CCTGTGTGTGTGTGTGTGTGT chr5:20275245-20275345 + 3 1.44e-06 CG TTTGTTTTTGTTTTTTCCATT TCTCAGAGCT chr1:75061651-75061751 + 72 1.72e-06 TTCCTAGTAG TGTCTGTTTTACTGTCTTTGT TTGTTGTT chr6:27776165-27776265 + 59 1.87e-06 TCAATAAATG TGTGTTTTCTTATAACTGTTT CATCATTACT chr3:18198738-18198838 - 80 2.41e-06 . TGTGGTTTATTTTATCTCTTT CTATAGTCTT chr11:17401123-17401223 + 19 2.41e-06 TTTATTGATT TATTTATTTGTTTATCTATTT GCCTCTCTTG chr6:139895741-139895841 - 35 2.85e-06 CATGAAGCTC TGTATGTGCTAGTGATTATGT TTGGAAGTTC chr13:10779631-10779731 - 77 2.85e-06 CAA TGTTGATTTATATTTGTATGT CTTGGCACAG chr15:6392371-6392471 + 10 3.63e-06 TGGCATGGT TTTTGTTTTTTTTAACTAATT CTTTTCCACT chr1:69940887-69940987 - 50 3.63e-06 GAGAGAATAA TTAATTTTTTTCTCTTTTTTT AGATAATTGG chr18:7657762-7657862 - 39 4.60e-06 CTGGGCGCAT TGTATTTACATGTGTCTCTGG TCAAACAGAA chr12:70965032-70965132 - 7 4.98e-06 GCTTGGGTTT CGTTGTTGTGTTTTGTCTTGT TTTTTA chr2:67561498-67561598 - 65 5.80e-06 ATGGCCGCCT TGTTTGCTTGTCTTTCGTTTG AGAATTTCAA chr3:148664101-148664201 - 78 6.26e-06 TG TGTGTGTATTCATATGTATGT GCACATCTGT chr6:16501056-16501156 - 72 6.26e-06 AAAGGGCA CTTTTGTGTGTATTTCTCTCG GCTTTCCCTT chr18:12714416-12714516 - 74 6.75e-06 GACTGT TTTATGTTCTGGTCATTATTT CTAGGAAGCC chr13:52163752-52163852 - 48 6.75e-06 CTTCCACACT ATTTTTTTTTTTTTACTCTCT ACTGTGTCGG chr5:96735357-96735457 + 57 9.06e-06 CAAAACTATA TGTTGGTTTTTTTTATTAAGC TATATGTTTA chr10:47372214-47372314 - 31 9.06e-06 GCTGAGTACT TGTTTTTTCGGTGTTTTTTAT TGATACAATT chr3:59945170-59945270 - 3 9.74e-06 TGACCACACC TTTATGTGTAGTTAATTATTG TT chr5:104828392-104828492 - 32 1.70e-05 AAAACCATTA TTTATTTAAGTCTATTTTAGT TGTCTCATTT chr11:17636061-17636161 - 16 4.16e-05 TTCAGATTAG TGTATTGATTTCTGAGTATCG ATTAACTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:37957671-37957771 2.9e-10 38_[+1]_41 chr4:130272386-130272486 5.9e-10 4_[+1]_75 chr15:86254386-86254486 1.1e-09 14_[+1]_65 chr16:92965618-92965718 1.3e-09 29_[+1]_13_[+1]_16 chr10:41296094-41296194 5.1e-08 33_[+1]_9_[+1]_16 chr7:122937745-122937845 4e-09 16_[-1]_63 chr13:16138588-16138688 1.6e-08 72_[-1]_7 chr15:4677206-4677306 1.8e-08 20_[+1]_59 chr19:44046642-44046742 4e-08 10_[+1]_69 chr18:59377343-59377443 4e-08 39_[+1]_40 chr17:78806628-78806728 6.6e-08 60_[-1]_19 chr18:81466430-81466530 9.4e-08 50_[+1]_29 chr9:79644162-79644262 1.5e-07 3_[-1]_76 chr15:54878214-54878314 2.5e-07 16_[-1]_63 chr1:176695553-176695653 2.5e-07 69_[+1]_10 chr5:22964593-22964693 4.2e-07 37_[+1]_42 chr3:18154346-18154446 4.7e-07 31_[+1]_48 chr15:38277348-38277448 4.7e-07 46_[+1]_33 chr6:149173379-149173479 5.2e-07 9_[-1]_70 chr9:45918584-45918684 6.3e-07 8_[-1]_71 chr3:98450035-98450135 6.3e-07 70_[+1]_9 chr15:67174774-67174874 8.4e-07 64_[-1]_15 chr17:33072205-33072305 1e-06 38_[-1]_41 chr8:10012218-10012318 1.2e-06 79_[+1] chr5:20275245-20275345 1.4e-06 2_[+1]_77 chr1:75061651-75061751 1.7e-06 71_[+1]_8 chr6:27776165-27776265 1.9e-06 58_[+1]_21 chr3:18198738-18198838 2.4e-06 79_[-1] chr11:17401123-17401223 2.4e-06 18_[+1]_61 chr6:139895741-139895841 2.8e-06 34_[-1]_45 chr13:10779631-10779731 2.8e-06 76_[-1]_3 chr15:6392371-6392471 3.6e-06 9_[+1]_70 chr1:69940887-69940987 3.6e-06 49_[-1]_30 chr18:7657762-7657862 4.6e-06 38_[-1]_41 chr12:70965032-70965132 5e-06 6_[-1]_73 chr2:67561498-67561598 5.8e-06 64_[-1]_15 chr3:148664101-148664201 6.3e-06 77_[-1]_2 chr6:16501056-16501156 6.3e-06 71_[-1]_8 chr18:12714416-12714516 6.7e-06 73_[-1]_6 chr13:52163752-52163852 6.7e-06 47_[-1]_32 chr5:96735357-96735457 9.1e-06 56_[+1]_23 chr10:47372214-47372314 9.1e-06 30_[-1]_49 chr3:59945170-59945270 9.7e-06 2_[-1]_77 chr5:104828392-104828492 1.7e-05 31_[-1]_48 chr11:17636061-17636161 4.2e-05 15_[-1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=47 chr12:37957671-37957771 ( 39) TGTTTTTTTTTTTTTTTTTTT 1 chr4:130272386-130272486 ( 5) TGTTTTTTTTTTTGTTTGTTT 1 chr15:86254386-86254486 ( 15) TGTTTTTTTGGTTTTGTTTGT 1 chr16:92965618-92965718 ( 64) TGTGTGTGTGTTTGTGTGTGT 1 chr16:92965618-92965718 ( 30) TGTATGTGTGTGTGTGTGTGT 1 chr10:41296094-41296194 ( 34) TGTGTGTGTGTGTGTGTGTGT 1 chr7:122937745-122937845 ( 17) TTTTTGTGTGTGTGTGTATGT 1 chr13:16138588-16138688 ( 73) TGTTTGTTTGATTATTTTTGT 1 chr15:4677206-4677306 ( 21) TGTTTTTTTGTCTTTCTTTTG 1 chr19:44046642-44046742 ( 11) TGTATTTGTGTGTGGGTATGT 1 chr18:59377343-59377443 ( 40) TTTATTTATGTTTGTTTATTT 1 chr10:41296094-41296194 ( 64) TGTGTGTGTGTGTAAGTGTGT 1 chr17:78806628-78806728 ( 61) CTTTTTTTTTTTTTTTTTTTT 1 chr18:81466430-81466530 ( 51) TCTTTGTTTGTTTTTCTTTCT 1 chr9:79644162-79644262 ( 4) TGTTTGTTTTTGTTCTTATTT 1 chr15:54878214-54878314 ( 17) TGTTTGCATGTATGTCTGTGT 1 chr1:176695553-176695653 ( 70) TGTATTTGTTTATTGTTTTTT 1 chr5:22964593-22964693 ( 38) TGATTGCTTGTGTTTTTCTGT 1 chr3:18154346-18154446 ( 32) TTTGTGTGTATTTCTGTGTGT 1 chr15:38277348-38277448 ( 47) TGCTGTTTTGTTTTTTTCTTT 1 chr6:149173379-149173479 ( 10) TGTTTTGTTGTTGTTGTTTTT 1 chr9:45918584-45918684 ( 9) TGTTTTCTTTTTTGATTTATT 1 chr3:98450035-98450135 ( 71) TGTTTGTTTGGGAGTCTCTTT 1 chr15:67174774-67174874 ( 65) TTTTTTTTTGGTTCTTCCTGT 1 chr17:33072205-33072305 ( 39) TTTATTTTTAGTTGGTTTTGT 1 chr8:10012218-10012318 ( 80) CCTGTGTGTGTGTGTGTGTGT 1 chr5:20275245-20275345 ( 3) TTTGTTTTTGTTTTTTCCATT 1 chr1:75061651-75061751 ( 72) TGTCTGTTTTACTGTCTTTGT 1 chr6:27776165-27776265 ( 59) TGTGTTTTCTTATAACTGTTT 1 chr3:18198738-18198838 ( 80) TGTGGTTTATTTTATCTCTTT 1 chr11:17401123-17401223 ( 19) TATTTATTTGTTTATCTATTT 1 chr6:139895741-139895841 ( 35) TGTATGTGCTAGTGATTATGT 1 chr13:10779631-10779731 ( 77) TGTTGATTTATATTTGTATGT 1 chr15:6392371-6392471 ( 10) TTTTGTTTTTTTTAACTAATT 1 chr1:69940887-69940987 ( 50) TTAATTTTTTTCTCTTTTTTT 1 chr18:7657762-7657862 ( 39) TGTATTTACATGTGTCTCTGG 1 chr12:70965032-70965132 ( 7) CGTTGTTGTGTTTTGTCTTGT 1 chr2:67561498-67561598 ( 65) TGTTTGCTTGTCTTTCGTTTG 1 chr3:148664101-148664201 ( 78) TGTGTGTATTCATATGTATGT 1 chr6:16501056-16501156 ( 72) CTTTTGTGTGTATTTCTCTCG 1 chr18:12714416-12714516 ( 74) TTTATGTTCTGGTCATTATTT 1 chr13:52163752-52163852 ( 48) ATTTTTTTTTTTTTACTCTCT 1 chr5:96735357-96735457 ( 57) TGTTGGTTTTTTTTATTAAGC 1 chr10:47372214-47372314 ( 31) TGTTTTTTCGGTGTTTTTTAT 1 chr3:59945170-59945270 ( 3) TTTATGTGTAGTTAATTATTG 1 chr5:104828392-104828492 ( 32) TTTATTTAAGTCTATTTTAGT 1 chr11:17636061-17636161 ( 16) TGTATTGATTTCTGAGTATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.4204 E= 1.5e-025 -372 -136 -1220 167 -372 -236 155 8 -273 -336 -1220 173 -14 -336 -19 92 -1220 -1220 -77 163 -273 -1220 103 86 -1220 -136 -236 163 -114 -1220 34 108 -273 -104 -1220 159 -140 -1220 128 36 -214 -336 -55 144 -114 -77 23 80 -372 -1220 -236 173 -56 -136 64 44 -40 -336 -136 127 -1220 34 34 67 -1220 -177 -336 170 -3 -19 -19 27 -140 -1220 -1220 167 -372 -136 110 60 -1220 -336 -77 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 47 E= 1.5e-025 0.021277 0.085106 0.000000 0.893617 0.021277 0.042553 0.638298 0.297872 0.042553 0.021277 0.000000 0.936170 0.255319 0.021277 0.191489 0.531915 0.000000 0.000000 0.127660 0.872340 0.042553 0.000000 0.446809 0.510638 0.000000 0.085106 0.042553 0.872340 0.127660 0.000000 0.276596 0.595745 0.042553 0.106383 0.000000 0.851064 0.106383 0.000000 0.531915 0.361702 0.063830 0.021277 0.148936 0.765957 0.127660 0.127660 0.255319 0.489362 0.021277 0.000000 0.042553 0.936170 0.191489 0.085106 0.340426 0.382979 0.212766 0.021277 0.085106 0.680851 0.000000 0.276596 0.276596 0.446809 0.000000 0.063830 0.021277 0.914894 0.276596 0.191489 0.191489 0.340426 0.106383 0.000000 0.000000 0.893617 0.021277 0.085106 0.468085 0.425532 0.000000 0.021277 0.127660 0.851064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- T[GT]T[TA]T[TG]T[TG]T[GT]T[TG]T[TG][TA][TCG]T[TA]T[GT]T -------------------------------------------------------------------------------- Time 36.82 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 11 sites = 50 llr = 530 E-value = 3.5e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 34::::41:aa pos.-specific C :2::a11:::: probability G 41::::49a:: matrix T 23aa:91:::: bits 2.2 * * 2.0 * * 1.8 *** ** * 1.5 *** **** Relative 1.3 **** **** Entropy 1.1 **** **** (15.3 bits) 0.9 **** **** 0.7 **** **** 0.4 * **** **** 0.2 * ********* 0.0 ----------- Multilevel GATTCTGGGAA consensus AT A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr2:43364879-43364979 + 41 2.48e-07 GCCAATGATA GATTCTGGGAA TGTGGAACGA chr17:84685775-84685875 - 14 2.48e-07 AAAGGAGGTT GATTCTGGGAA ATTTGGACAG chr4:108779255-108779355 - 42 2.48e-07 CTTAATTATT GATTCTGGGAA GAAGACCTTA chr3:136337302-136337402 + 77 2.48e-07 CAGGTAGAGC GATTCTGGGAA GATGTCTAAG chr5:70714805-70714905 - 18 2.48e-07 ACTATTGATG GATTCTGGGAA AAACAGACAT chr4:97599818-97599918 + 67 4.95e-07 CTTTGTAAAA GTTTCTGGGAA AGCTATGTGT chr9:67672243-67672343 - 65 4.95e-07 TAAACAGAGA GTTTCTGGGAA ATGTCTTCCC chr5:22964593-22964693 + 69 4.95e-07 AATGATCTCT GTTTCTGGGAA GTTTCTTTGA chr12:58616521-58616621 - 83 4.95e-07 TGAACCT GTTTCTGGGAA CCTGTTAGTC chr10:121750936-12175103 - 84 1.33e-06 CTCTGG GCTTCTGGGAA CTCAGGGCAC chr2:112435335-112435435 - 79 1.33e-06 CACTTCCTGG AATTCTGGGAA TGGTAGTTCT chr13:16138588-16138688 + 6 1.33e-06 CAAAT AATTCTGGGAA AACTGGACAG chr2:41894770-41894870 + 16 1.97e-06 TGTATTATTC ATTTCTGGGAA TGAAACCCAG chr5:53336363-53336463 - 53 1.97e-06 GCCTGGGATC GTTTCTAGGAA CAGAGAAGGA chr12:70964447-70964547 - 20 2.16e-06 TTTTGATGTG GGTTCTGGGAA TGAAAACTCA chr6:138020934-138021034 + 19 2.16e-06 ACTTGAGCAG GGTTCTGGGAA CCAAATTACC chr4:81376286-81376386 + 90 3.07e-06 TAGGCATTTG GCTTCTAGGAA chr10:23974577-23974677 + 43 3.07e-06 GATACAGTAA AATTCTAGGAA GTTTATGAAG chr3:97792114-97792214 - 22 3.80e-06 ACCTGGGTTC TATTCTGGGAA CCCACAGGGT chr17:8470039-8470139 - 82 3.80e-06 CTTGGATG ATTTCTAGGAA TCATGATGTC chr6:149086530-149086630 + 85 4.12e-06 GTAAGGGAAT TTTTCTGGGAA CTGCT chr6:139920151-139920251 - 1 4.62e-06 CCACCAAGTG AGTTCTGGGAA chr5:152213869-152213969 + 24 4.62e-06 ACTACAAGAG AGTTCTGGGAA TAAGCAAACA chr2:144024103-144024203 - 1 4.62e-06 TTTGGGGGCC AGTTCTGGGAA chr12:106967062-10696716 + 88 4.62e-06 CTGCCAGGCA GGTTCTAGGAA AC chr10:94615187-94615287 - 32 4.94e-06 AACCTTGTGT ACTTCTAGGAA GCCGGGCAGT chr6:54713813-54713913 + 19 4.94e-06 ATTGGACCAA ACTTCTAGGAA ATCTGATGCC chr8:37382547-37382647 - 60 5.92e-06 TACCAAACTC TATTCTAGGAA CCCAAGGGCA chr15:61953182-61953282 - 21 5.92e-06 CCTAGCTGAA TATTCTAGGAA GCTCTCTTCC chr13:44532949-44533049 - 81 6.90e-06 TGCCAAACA GTTTCTTGGAA ATGAACAAAG chr9:45918584-45918684 - 50 6.90e-06 GATCCCTACC GTTTCTTGGAA ATTCCGAGGC chr2:143701806-143701906 + 5 6.90e-06 AACA TTTTCTAGGAA CCACAAAACA chr11:80260429-80260529 - 33 7.47e-06 CTTGTACTTG AGTTCTAGGAA CCAAACTCAG chr9:66444117-66444217 + 69 8.70e-06 CCTGGTTCCT AATTCTTGGAA TACCACTGAC chr2:67561498-67561598 - 17 8.70e-06 TAGTTTCTGT TCTTCTAGGAA TCAGTTGATT chr14:23610065-23610165 - 81 8.70e-06 ATTATCTGA TCTTCTAGGAA ACTGGGAGAG chr15:52994574-52994674 + 85 8.70e-06 TTCTTGATAT AATTCTTGGAA CACCG chr2:50187296-50187396 + 64 9.63e-06 GTGGGTTCAT ATTTCTTGGAA TACATCTTTA chr12:105572799-10557289 - 63 1.17e-05 GTTTCATGGG TATTCTTGGAA TAACTGTCAA chr6:117010552-117010652 + 56 1.43e-05 TGTACCACTA TCTTCTCGGAA ACCCTTGGGT chr1:55136490-55136590 - 37 1.52e-05 TTTCCACTGT GATTCCAGGAA TACTCAGGCC chr13:41908578-41908678 - 53 2.06e-05 AATGAAGTTC ATTTCCAGGAA TGGAATAAAG chr13:34319898-34319998 - 38 2.06e-05 CAAGGACACA GATTCTAAGAA TTTGTAGTTC chr19:44046642-44046742 + 76 2.70e-05 GGGCATCAGA TATTCCAGGAA CTGGAGTTAC chr13:46248674-46248774 - 12 2.91e-05 GTCACGGATC ATTTCTAAGAA CCCCCGTTCG chr8:42195997-42196097 - 73 4.09e-05 GCTGTGTGCT GTTTCTTAGAA CTGTGTGTCC chr5:66486391-66486491 + 3 5.19e-05 TG CCTTCTCGGAA TGAGAAGAGG chr4:122704104-122704204 + 67 5.92e-05 AACTTGGTAG ATTTCTCGGTA AGGTATTTCA chr4:130272386-130272486 + 40 6.84e-05 GACCCTTGTA TATTCTCGGTA TCTCTTCTGG chr14:9258417-9258517 + 89 7.09e-05 CTTGTGTAAC GCTTCACGGAA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:43364879-43364979 2.5e-07 40_[+2]_49 chr17:84685775-84685875 2.5e-07 13_[-2]_76 chr4:108779255-108779355 2.5e-07 41_[-2]_48 chr3:136337302-136337402 2.5e-07 76_[+2]_13 chr5:70714805-70714905 2.5e-07 17_[-2]_72 chr4:97599818-97599918 5e-07 66_[+2]_23 chr9:67672243-67672343 5e-07 64_[-2]_25 chr5:22964593-22964693 5e-07 68_[+2]_21 chr12:58616521-58616621 5e-07 82_[-2]_7 chr10:121750936-12175103 1.3e-06 83_[-2]_6 chr2:112435335-112435435 1.3e-06 78_[-2]_11 chr13:16138588-16138688 1.3e-06 5_[+2]_84 chr2:41894770-41894870 2e-06 15_[+2]_74 chr5:53336363-53336463 2e-06 52_[-2]_37 chr12:70964447-70964547 2.2e-06 19_[-2]_70 chr6:138020934-138021034 2.2e-06 18_[+2]_71 chr4:81376286-81376386 3.1e-06 89_[+2] chr10:23974577-23974677 3.1e-06 42_[+2]_47 chr3:97792114-97792214 3.8e-06 21_[-2]_68 chr17:8470039-8470139 3.8e-06 81_[-2]_8 chr6:149086530-149086630 4.1e-06 84_[+2]_5 chr6:139920151-139920251 4.6e-06 [-2]_89 chr5:152213869-152213969 4.6e-06 23_[+2]_66 chr2:144024103-144024203 4.6e-06 [-2]_89 chr12:106967062-10696716 4.6e-06 87_[+2]_2 chr10:94615187-94615287 4.9e-06 31_[-2]_58 chr6:54713813-54713913 4.9e-06 18_[+2]_71 chr8:37382547-37382647 5.9e-06 59_[-2]_30 chr15:61953182-61953282 5.9e-06 20_[-2]_69 chr13:44532949-44533049 6.9e-06 80_[-2]_9 chr9:45918584-45918684 6.9e-06 49_[-2]_40 chr2:143701806-143701906 6.9e-06 4_[+2]_85 chr11:80260429-80260529 7.5e-06 32_[-2]_57 chr9:66444117-66444217 8.7e-06 68_[+2]_21 chr2:67561498-67561598 8.7e-06 16_[-2]_73 chr14:23610065-23610165 8.7e-06 80_[-2]_9 chr15:52994574-52994674 8.7e-06 84_[+2]_5 chr2:50187296-50187396 9.6e-06 63_[+2]_26 chr12:105572799-10557289 1.2e-05 62_[-2]_27 chr6:117010552-117010652 1.4e-05 55_[+2]_34 chr1:55136490-55136590 1.5e-05 36_[-2]_53 chr13:41908578-41908678 2.1e-05 52_[-2]_37 chr13:34319898-34319998 2.1e-05 37_[-2]_52 chr19:44046642-44046742 2.7e-05 75_[+2]_14 chr13:46248674-46248774 2.9e-05 11_[-2]_78 chr8:42195997-42196097 4.1e-05 72_[-2]_17 chr5:66486391-66486491 5.2e-05 2_[+2]_87 chr4:122704104-122704204 5.9e-05 66_[+2]_23 chr4:130272386-130272486 6.8e-05 39_[+2]_50 chr14:9258417-9258517 7.1e-05 88_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=11 seqs=50 chr2:43364879-43364979 ( 41) GATTCTGGGAA 1 chr17:84685775-84685875 ( 14) GATTCTGGGAA 1 chr4:108779255-108779355 ( 42) GATTCTGGGAA 1 chr3:136337302-136337402 ( 77) GATTCTGGGAA 1 chr5:70714805-70714905 ( 18) GATTCTGGGAA 1 chr4:97599818-97599918 ( 67) GTTTCTGGGAA 1 chr9:67672243-67672343 ( 65) GTTTCTGGGAA 1 chr5:22964593-22964693 ( 69) GTTTCTGGGAA 1 chr12:58616521-58616621 ( 83) GTTTCTGGGAA 1 chr10:121750936-12175103 ( 84) GCTTCTGGGAA 1 chr2:112435335-112435435 ( 79) AATTCTGGGAA 1 chr13:16138588-16138688 ( 6) AATTCTGGGAA 1 chr2:41894770-41894870 ( 16) ATTTCTGGGAA 1 chr5:53336363-53336463 ( 53) GTTTCTAGGAA 1 chr12:70964447-70964547 ( 20) GGTTCTGGGAA 1 chr6:138020934-138021034 ( 19) GGTTCTGGGAA 1 chr4:81376286-81376386 ( 90) GCTTCTAGGAA 1 chr10:23974577-23974677 ( 43) AATTCTAGGAA 1 chr3:97792114-97792214 ( 22) TATTCTGGGAA 1 chr17:8470039-8470139 ( 82) ATTTCTAGGAA 1 chr6:149086530-149086630 ( 85) TTTTCTGGGAA 1 chr6:139920151-139920251 ( 1) AGTTCTGGGAA 1 chr5:152213869-152213969 ( 24) AGTTCTGGGAA 1 chr2:144024103-144024203 ( 1) AGTTCTGGGAA 1 chr12:106967062-10696716 ( 88) GGTTCTAGGAA 1 chr10:94615187-94615287 ( 32) ACTTCTAGGAA 1 chr6:54713813-54713913 ( 19) ACTTCTAGGAA 1 chr8:37382547-37382647 ( 60) TATTCTAGGAA 1 chr15:61953182-61953282 ( 21) TATTCTAGGAA 1 chr13:44532949-44533049 ( 81) GTTTCTTGGAA 1 chr9:45918584-45918684 ( 50) GTTTCTTGGAA 1 chr2:143701806-143701906 ( 5) TTTTCTAGGAA 1 chr11:80260429-80260529 ( 33) AGTTCTAGGAA 1 chr9:66444117-66444217 ( 69) AATTCTTGGAA 1 chr2:67561498-67561598 ( 17) TCTTCTAGGAA 1 chr14:23610065-23610165 ( 81) TCTTCTAGGAA 1 chr15:52994574-52994674 ( 85) AATTCTTGGAA 1 chr2:50187296-50187396 ( 64) ATTTCTTGGAA 1 chr12:105572799-10557289 ( 63) TATTCTTGGAA 1 chr6:117010552-117010652 ( 56) TCTTCTCGGAA 1 chr1:55136490-55136590 ( 37) GATTCCAGGAA 1 chr13:41908578-41908678 ( 53) ATTTCCAGGAA 1 chr13:34319898-34319998 ( 38) GATTCTAAGAA 1 chr19:44046642-44046742 ( 76) TATTCCAGGAA 1 chr13:46248674-46248774 ( 12) ATTTCTAAGAA 1 chr8:42195997-42196097 ( 73) GTTTCTTAGAA 1 chr5:66486391-66486491 ( 3) CCTTCTCGGAA 1 chr4:122704104-122704204 ( 67) ATTTCTCGGTA 1 chr4:130272386-130272486 ( 40) TATTCTCGGTA 1 chr14:9258417-9258517 ( 89) GCTTCACGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.5659 E= 3.5e-018 27 -345 94 -36 35 -28 -64 18 -1229 -1229 -1229 183 -1229 -1229 -1229 183 -1229 220 -1229 -1229 -381 -186 -1229 171 35 -113 87 -101 -223 -1229 211 -1229 -1229 -1229 220 -1229 177 -1229 -1229 -281 183 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 50 E= 3.5e-018 0.340000 0.020000 0.420000 0.220000 0.360000 0.180000 0.140000 0.320000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.020000 0.060000 0.000000 0.920000 0.360000 0.100000 0.400000 0.140000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 1.000000 0.000000 0.960000 0.000000 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GAT][AT]TTCT[GA]GGAA -------------------------------------------------------------------------------- Time 67.30 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 11 sites = 50 llr = 550 E-value = 9.6e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1:::::1::7a pos.-specific C 13::a7::::: probability G 23:::::aa:: matrix T 54aa:39::3: bits 2.2 * * 2.0 * ** 1.8 *** ** * 1.5 *** *** * Relative 1.3 *** *** * Entropy 1.1 ******* * (15.9 bits) 0.9 ******* * 0.7 ********* 0.4 ********* 0.2 *********** 0.0 ----------- Multilevel TTTTCCTGGAA consensus GG T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr4:144573831-144573931 + 88 5.68e-07 TTCTATTATT TGTTCCTGGAA CC chr1:4660646-4660746 - 45 5.68e-07 ATCCATTTTT TTTTCCTGGAA CCAGGAAGCG chr7:79468294-79468394 + 69 5.68e-07 ATTGCAGTCA TTTTCCTGGAA TAAGCAGCGA chr13:9073017-9073117 - 34 5.68e-07 CCTTACTCAT TGTTCCTGGAA CTTCAGTGTT chrX:14334452-14334552 + 80 5.68e-07 TCTTCTGTAA TGTTCCTGGAA AACCCAATTA chr16:87636131-87636231 - 55 5.68e-07 TTGCAGAACT TTTTCCTGGAA GCCTGAATCA chr16:92159434-92159534 + 70 8.16e-07 AGAAGTGGTT TCTTCCTGGAA CAGGTTGCAG chr16:92159434-92159534 + 48 8.16e-07 AGCAGTGATT TCTTCCTGGAA GAGAAGTGGT chr11:78659686-78659786 + 67 8.16e-07 AAAAAATTGT TCTTCCTGGAA TTCAAGATGA chr6:24591349-24591449 + 82 1.25e-06 TTGTGATCTA GTTTCCTGGAA GGCAGAGT chr8:73088598-73088698 - 34 1.45e-06 TCCTCCCCCA GCTTCCTGGAA GGATGAGTGT chr9:45924828-45924928 - 65 1.45e-06 CAGTCACACT GCTTCCTGGAA ATTGTACAGT chr9:45924828-45924928 - 22 1.45e-06 CAGTTGCACT GCTTCCTGGAA ATTGTACAGT chr13:75504365-75504465 + 77 3.00e-06 CAAGATTAGC TGTTCTTGGAA AAATAACCAT chr5:123540847-123540947 - 26 3.00e-06 CTGGAATACT TGTTCTTGGAA CAGAGTCCAA chr11:48712347-48712447 + 17 3.00e-06 TATGCTTTAT TGTTCTTGGAA ACCAATCATA chr2:152373804-152373904 + 27 3.00e-06 AGTGAACGAA TGTTCTTGGAA GATACTGGCT chr13:46248674-46248774 + 54 3.00e-06 ATGCCAAAGG TTTTCTTGGAA AAGGTTGCAT chr1:82154910-82155010 + 62 3.76e-06 ACAAATGTTC TCTTCTTGGAA ACCGATAGCA chr3:69165997-69166097 + 15 3.76e-06 TTTTTTTTTT CTTTCCTGGAA TTATTTGGAT chr5:151821392-151821492 + 25 3.76e-06 ATTTACATTC TCTTCTTGGAA TATAAAAAAT chr18:57133519-57133619 - 30 3.76e-06 GAAAACAAGT CTTTCCTGGAA ACTGCTGAGT chr18:4278332-4278432 + 39 3.76e-06 TCTCATGTGC CTTTCCTGGAA CCTGGATGCA chr1:155406736-155406836 + 41 3.76e-06 GTTACGAGTA CTTTCCTGGAA TATGAGTCTG chr4:57135893-57135993 - 76 3.95e-06 GTTGACCCCG CCTTCCTGGAA ACCTGTCTGC chr18:60392735-60392835 - 66 4.95e-06 ATGGAAACTG ATTTCCTGGAA TCCTTGGTGT chr18:7657762-7657862 + 86 4.95e-06 TCATGTGCAA AGTTCCTGGAA TTAA chr10:120786565-12078666 + 41 4.95e-06 GTTTCTCGAA GTTTCCTGGTA AAGTGAATAG chr2:161191571-161191671 + 71 4.95e-06 GTACCCTTTC ATTTCCTGGAA GGCTGGTCTA chr3:58312226-58312326 + 1 5.96e-06 . GCTTCCTGGTA GAAGGTGGCA chr8:130857215-130857315 - 40 5.96e-06 GTAACCCACA GGTTCTTGGAA GATCTCAAAT chr12:81954686-81954786 - 8 6.21e-06 TGCAAAAATG GCTTCTTGGAA ACCACAA chr17:33072205-33072305 + 22 6.94e-06 GATATTGATT TGTTCTTGGTA ACATTTACAA chr15:54409331-54409431 - 34 6.94e-06 CCATCCTTCT TTTTCTTGGTA TTATTTCAGG chr3:142402844-142402944 - 36 6.94e-06 GAATTCCCAC TGTTCTTGGTA CCTGGATCTG chr10:17241821-17241921 + 22 7.70e-06 TTCTTATCAG TCTTCTTGGTA ATGTTTGAAC chr11:70758972-70759072 - 77 8.46e-06 GACCTTTGAG CTTTCTTGGAA ATTGTCTTTG chr1:65453966-65454066 + 90 8.46e-06 GCCATGCGGT CCTTCCTGGTA chr18:39816058-39816158 - 1 9.03e-06 TCACATTCCC TATTCCTGGAA chr9:122266182-122266282 - 78 9.60e-06 TGAACACTTA AGTTCCTGGTA ATTCCTGTTC chr8:10961879-10961979 - 74 9.60e-06 AGAACATGAG ATTTCCTGGTA GGACTCACAG chr6:149170729-149170829 - 55 1.11e-05 AGCCGAGGCT GGTTCTTGGTA TTGCAGATAG chr2:112435335-112435435 - 64 1.11e-05 TGGGAATGGT AGTTCTTGGAA AATAACAAAG chr3:145486599-145486699 + 30 1.22e-05 CTAATTCTGC TTTTCCTGGGA TGGAAGACTG chr3:82836985-82837085 - 30 1.22e-05 TAGGGGCTGT TGTTCCTGGGA TCGTAGGTGC chr10:78080944-78081044 - 39 1.29e-05 TTGCTTATTA TTTTCCAGGAA TTTTCCTTGG chr14:73533729-73533829 + 82 1.91e-05 TTAAATTGTT TTTTCCAGGTA TTTGTCAC chr5:123470387-123470487 + 46 1.91e-05 GGCAGTGTGG TTTTCCAGGTA ACTGTTACAC chr4:116404955-116405055 - 61 2.08e-05 CTGAGTCCGG GATTCCTGGTA CAAACCAGCA chr16:20109512-20109612 + 16 4.24e-05 TTCATTGAGC GTTTCCTGTTA ATCCTGAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:144573831-144573931 5.7e-07 87_[+3]_2 chr1:4660646-4660746 5.7e-07 44_[-3]_45 chr7:79468294-79468394 5.7e-07 68_[+3]_21 chr13:9073017-9073117 5.7e-07 33_[-3]_56 chrX:14334452-14334552 5.7e-07 79_[+3]_10 chr16:87636131-87636231 5.7e-07 54_[-3]_35 chr16:92159434-92159534 8.2e-07 47_[+3]_11_[+3]_20 chr11:78659686-78659786 8.2e-07 66_[+3]_23 chr6:24591349-24591449 1.3e-06 81_[+3]_8 chr8:73088598-73088698 1.4e-06 33_[-3]_56 chr9:45924828-45924928 1.4e-06 21_[-3]_32_[-3]_25 chr13:75504365-75504465 3e-06 76_[+3]_13 chr5:123540847-123540947 3e-06 25_[-3]_64 chr11:48712347-48712447 3e-06 16_[+3]_73 chr2:152373804-152373904 3e-06 26_[+3]_63 chr13:46248674-46248774 3e-06 53_[+3]_36 chr1:82154910-82155010 3.8e-06 61_[+3]_28 chr3:69165997-69166097 3.8e-06 14_[+3]_75 chr5:151821392-151821492 3.8e-06 24_[+3]_65 chr18:57133519-57133619 3.8e-06 29_[-3]_60 chr18:4278332-4278432 3.8e-06 38_[+3]_51 chr1:155406736-155406836 3.8e-06 40_[+3]_49 chr4:57135893-57135993 3.9e-06 75_[-3]_14 chr18:60392735-60392835 5e-06 65_[-3]_24 chr18:7657762-7657862 5e-06 85_[+3]_4 chr10:120786565-12078666 5e-06 40_[+3]_49 chr2:161191571-161191671 5e-06 70_[+3]_19 chr3:58312226-58312326 6e-06 [+3]_89 chr8:130857215-130857315 6e-06 39_[-3]_50 chr12:81954686-81954786 6.2e-06 7_[-3]_82 chr17:33072205-33072305 6.9e-06 21_[+3]_68 chr15:54409331-54409431 6.9e-06 33_[-3]_56 chr3:142402844-142402944 6.9e-06 35_[-3]_54 chr10:17241821-17241921 7.7e-06 21_[+3]_68 chr11:70758972-70759072 8.5e-06 76_[-3]_13 chr1:65453966-65454066 8.5e-06 89_[+3] chr18:39816058-39816158 9e-06 [-3]_89 chr9:122266182-122266282 9.6e-06 77_[-3]_12 chr8:10961879-10961979 9.6e-06 73_[-3]_16 chr6:149170729-149170829 1.1e-05 54_[-3]_35 chr2:112435335-112435435 1.1e-05 63_[-3]_26 chr3:145486599-145486699 1.2e-05 29_[+3]_60 chr3:82836985-82837085 1.2e-05 29_[-3]_60 chr10:78080944-78081044 1.3e-05 38_[-3]_51 chr14:73533729-73533829 1.9e-05 81_[+3]_8 chr5:123470387-123470487 1.9e-05 45_[+3]_44 chr4:116404955-116405055 2.1e-05 60_[-3]_29 chr16:20109512-20109612 4.2e-05 15_[+3]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=11 seqs=50 chr4:144573831-144573931 ( 88) TGTTCCTGGAA 1 chr1:4660646-4660746 ( 45) TTTTCCTGGAA 1 chr7:79468294-79468394 ( 69) TTTTCCTGGAA 1 chr13:9073017-9073117 ( 34) TGTTCCTGGAA 1 chrX:14334452-14334552 ( 80) TGTTCCTGGAA 1 chr16:87636131-87636231 ( 55) TTTTCCTGGAA 1 chr16:92159434-92159534 ( 70) TCTTCCTGGAA 1 chr16:92159434-92159534 ( 48) TCTTCCTGGAA 1 chr11:78659686-78659786 ( 67) TCTTCCTGGAA 1 chr6:24591349-24591449 ( 82) GTTTCCTGGAA 1 chr8:73088598-73088698 ( 34) GCTTCCTGGAA 1 chr9:45924828-45924928 ( 65) GCTTCCTGGAA 1 chr9:45924828-45924928 ( 22) GCTTCCTGGAA 1 chr13:75504365-75504465 ( 77) TGTTCTTGGAA 1 chr5:123540847-123540947 ( 26) TGTTCTTGGAA 1 chr11:48712347-48712447 ( 17) TGTTCTTGGAA 1 chr2:152373804-152373904 ( 27) TGTTCTTGGAA 1 chr13:46248674-46248774 ( 54) TTTTCTTGGAA 1 chr1:82154910-82155010 ( 62) TCTTCTTGGAA 1 chr3:69165997-69166097 ( 15) CTTTCCTGGAA 1 chr5:151821392-151821492 ( 25) TCTTCTTGGAA 1 chr18:57133519-57133619 ( 30) CTTTCCTGGAA 1 chr18:4278332-4278432 ( 39) CTTTCCTGGAA 1 chr1:155406736-155406836 ( 41) CTTTCCTGGAA 1 chr4:57135893-57135993 ( 76) CCTTCCTGGAA 1 chr18:60392735-60392835 ( 66) ATTTCCTGGAA 1 chr18:7657762-7657862 ( 86) AGTTCCTGGAA 1 chr10:120786565-12078666 ( 41) GTTTCCTGGTA 1 chr2:161191571-161191671 ( 71) ATTTCCTGGAA 1 chr3:58312226-58312326 ( 1) GCTTCCTGGTA 1 chr8:130857215-130857315 ( 40) GGTTCTTGGAA 1 chr12:81954686-81954786 ( 8) GCTTCTTGGAA 1 chr17:33072205-33072305 ( 22) TGTTCTTGGTA 1 chr15:54409331-54409431 ( 34) TTTTCTTGGTA 1 chr3:142402844-142402944 ( 36) TGTTCTTGGTA 1 chr10:17241821-17241921 ( 22) TCTTCTTGGTA 1 chr11:70758972-70759072 ( 77) CTTTCTTGGAA 1 chr1:65453966-65454066 ( 90) CCTTCCTGGTA 1 chr18:39816058-39816158 ( 1) TATTCCTGGAA 1 chr9:122266182-122266282 ( 78) AGTTCCTGGTA 1 chr8:10961879-10961979 ( 74) ATTTCCTGGTA 1 chr6:149170729-149170829 ( 55) GGTTCTTGGTA 1 chr2:112435335-112435435 ( 64) AGTTCTTGGAA 1 chr3:145486599-145486699 ( 30) TTTTCCTGGGA 1 chr3:82836985-82837085 ( 30) TGTTCCTGGGA 1 chr10:78080944-78081044 ( 39) TTTTCCAGGAA 1 chr14:73533729-73533829 ( 82) TTTTCCAGGTA 1 chr5:123470387-123470487 ( 46) TTTTCCAGGTA 1 chr4:116404955-116405055 ( 61) GATTCCTGGTA 1 chr16:20109512-20109612 ( 16) GTTTCCTGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.2091 E= 9.6e-026 -123 -64 1 88 -281 25 46 51 -1229 -1229 -1229 183 -1229 -1229 -1229 183 -1229 220 -1229 -1229 -1229 164 -1229 18 -223 -1229 -1229 174 -1229 -1229 220 -1229 -1229 -1229 217 -381 127 -1229 -245 -1 183 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 50 E= 9.6e-026 0.120000 0.140000 0.220000 0.520000 0.040000 0.260000 0.300000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.680000 0.000000 0.320000 0.060000 0.000000 0.000000 0.940000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.020000 0.680000 0.000000 0.040000 0.280000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG][TGC]TTC[CT]TGG[AT]A -------------------------------------------------------------------------------- Time 97.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:129796001-129796101 9.09e-01 100 chr18:12713800-12713900 9.75e-01 100 chr7:20333148-20333248 6.98e-01 100 chr15:52994574-52994674 4.38e-04 84_[+2(8.70e-06)]_5 chr2:134538983-134539083 7.68e-01 100 chr1:23327855-23327955 9.56e-01 100 chr12:41300629-41300729 3.95e-01 100 chrX:18674392-18674492 1.54e-01 100 chr5:123470387-123470487 2.98e-03 45_[+3(1.91e-05)]_44 chr16:10648974-10649074 4.40e-01 100 chr15:67174774-67174874 1.15e-03 64_[-1(8.35e-07)]_15 chr2:147757477-147757577 5.08e-03 23_[-1(2.87e-05)]_56 chr11:16602000-16602100 1.99e-02 100 chr10:17241821-17241921 5.32e-04 21_[+3(7.70e-06)]_68 chr9:74178913-74179013 3.69e-01 100 chr11:86393965-86394065 9.90e-01 100 chr3:18145705-18145805 3.36e-03 40_[-3(1.54e-05)]_49 chr13:16138588-16138688 2.14e-08 5_[+2(1.33e-06)]_56_[-1(1.57e-08)]_\ 7 chr6:138023964-138024064 8.26e-01 100 chr11:68653096-68653196 9.87e-01 100 chr3:98450035-98450135 2.56e-03 70_[+1(6.29e-07)]_9 chr13:10779631-10779731 6.42e-03 76_[-1(2.85e-06)]_3 chr1:69940887-69940987 1.50e-02 49_[-1(3.63e-06)]_30 chr2:161191571-161191671 5.90e-05 70_[+3(4.95e-06)]_19 chr9:30999162-30999262 2.20e-01 100 chr15:75210177-75210277 3.77e-03 2_[+3(3.76e-05)]_87 chr8:47447543-47447643 5.30e-01 100 chr3:51815122-51815222 1.11e-02 57_[-2(3.85e-05)]_32 chr16:87636131-87636231 4.10e-06 54_[-3(5.68e-07)]_35 chr8:63915487-63915587 1.75e-02 78_[+2(7.09e-05)]_11 chr4:149708263-149708363 2.74e-01 100 chr13:46248674-46248774 1.31e-05 11_[-2(2.91e-05)]_31_[+3(3.00e-06)]_\ 36 chr9:79578400-79578500 9.29e-01 100 chr1:155406736-155406836 5.71e-05 40_[+3(3.76e-06)]_49 chr11:16644650-16644750 1.45e-01 100 chr8:27704257-27704357 9.88e-01 100 chr11:28602327-28602427 2.22e-02 100 chr5:151820951-151821051 2.76e-01 100 chr15:6392371-6392471 1.49e-03 9_[+1(3.63e-06)]_70 chr4:57310952-57311052 5.33e-03 100 chr18:4278332-4278432 2.69e-04 38_[+3(3.76e-06)]_51 chr2:41877965-41878065 2.17e-03 23_[-2(3.09e-05)]_66 chr15:58974022-58974122 2.70e-01 100 chr18:39177389-39177489 5.31e-01 100 chr4:104512443-104512543 6.46e-01 100 chr5:42840781-42840881 9.95e-01 100 chr6:53946480-53946580 7.89e-01 100 chr6:149088033-149088133 4.81e-01 100 chr1:35990299-35990399 2.05e-03 52_[-2(3.07e-06)]_37 chr9:122266745-122266845 1.56e-01 100 chr4:130272386-130272486 3.33e-08 [+1(5.92e-10)]_18_[+2(6.84e-05)]_50 chr12:81954686-81954786 7.97e-06 7_[-3(6.21e-06)]_82 chr8:25679015-25679115 2.78e-01 100 chr5:33807836-33807936 7.82e-01 100 chr16:92965618-92965718 5.06e-07 29_[+1(2.35e-09)]_7_[+1(1.35e-09)]_\ 22 chr1:40299503-40299603 2.57e-01 100 chr19:57332262-57332362 8.91e-01 100 chr15:3557985-3558085 4.30e-01 100 chr9:57061809-57061909 2.31e-01 100 chr14:73533729-73533829 1.11e-03 81_[+3(1.91e-05)]_8 chr2:143701806-143701906 8.23e-06 4_[+2(6.90e-06)]_8_[+1(7.03e-05)]_\ 56 chr4:104057212-104057312 9.70e-01 100 chr3:27803943-27804043 2.24e-01 100 chr2:72590648-72590748 5.64e-01 100 chr13:63650590-63650690 1.86e-01 100 chr11:67370839-67370939 1.86e-02 74_[-2(8.38e-05)]_15 chr15:41555877-41555977 7.87e-01 100 chr5:70714805-70714905 1.13e-04 17_[-2(2.48e-07)]_72 chr6:27773766-27773866 9.65e-03 77_[-1(5.27e-05)]_2 chr1:176695553-176695653 5.72e-05 30_[-3(9.73e-05)]_28_[+1(2.54e-07)]_\ 10 chr3:136337302-136337402 2.17e-04 76_[+2(2.48e-07)]_13 chr17:37353710-37353810 6.59e-02 100 chr2:103409780-103409880 1.02e-03 6_[+3(2.74e-05)]_83 chr3:14840694-14840794 5.83e-02 50_[-2(4.61e-05)]_39 chr4:109478498-109478598 7.94e-02 100 chr1:191935426-191935526 9.96e-01 100 chr13:97730129-97730229 8.03e-02 100 chr1:49629347-49629447 5.23e-03 86_[-2(5.19e-05)]_3 chr11:79374022-79374122 9.92e-01 100 chr3:59945170-59945270 2.27e-02 2_[-1(9.74e-06)]_77 chr15:38278428-38278528 2.10e-01 100 chr9:74641017-74641117 3.45e-01 100 chr14:70026038-70026138 2.03e-01 100 chr6:147893381-147893481 4.11e-02 100 chr16:48765255-48765355 2.19e-02 27_[-2(3.09e-05)]_62 chr3:85938923-85939023 1.41e-01 100 chr9:69925820-69925920 1.91e-01 100 chr4:107763268-107763368 5.07e-01 100 chr8:107355148-107355248 1.23e-01 100 chr17:46261005-46261105 9.57e-01 100 chr15:3568248-3568348 6.41e-01 100 chr2:72579767-72579867 3.88e-01 100 chr8:124571208-124571308 5.61e-01 100 chr16:46833684-46833784 6.88e-02 100 chr7:76119890-76119990 7.39e-01 100 chr16:34748858-34748958 7.67e-01 100 chr9:45918584-45918684 3.78e-08 8_[-1(6.29e-07)]_20_[-3(5.96e-06)]_\ 40 chr10:23974577-23974677 4.89e-04 42_[+2(3.07e-06)]_47 chrX:14334452-14334552 1.06e-05 79_[+3(5.68e-07)]_10 chr18:29934220-29934320 6.76e-03 28_[+3(7.76e-05)]_61 chr14:31717520-31717620 7.42e-01 100 chr3:18243034-18243134 3.28e-01 100 chr9:79609783-79609883 2.68e-01 100 chr4:122612899-122612999 7.82e-01 100 chr3:80813722-80813822 2.64e-02 100 chr1:176419995-176420095 9.02e-02 100 chr17:43447162-43447262 2.28e-02 53_[+1(6.27e-05)]_26 chrX:138951078-138951178 4.84e-01 100 chr4:122704104-122704204 8.16e-03 66_[+2(5.92e-05)]_23 chr7:31773642-31773742 9.23e-01 100 chr4:142778840-142778940 3.11e-01 100 chr12:70965032-70965132 7.64e-03 6_[-1(4.98e-06)]_73 chr14:31716775-31716875 6.68e-01 100 chr14:75636842-75636942 6.04e-02 100 chr1:41608300-41608400 1.49e-01 100 chrX:147925355-147925455 1.01e-01 100 chr8:10905567-10905667 4.31e-01 100 chr4:107776453-107776553 3.72e-01 100 chr12:58616521-58616621 6.64e-05 82_[-2(4.95e-07)]_7 chr7:137774406-137774506 6.41e-02 19_[-2(5.19e-05)]_70 chr16:34320372-34320472 5.91e-01 100 chr5:107009912-107010012 9.99e-01 100 chr17:70310153-70310253 9.43e-01 100 chr10:116622431-11662253 7.34e-03 57_[+2(2.91e-05)]_32 chr10:47372214-47372314 2.34e-02 30_[-1(9.06e-06)]_49 chr15:78189111-78189211 1.35e-01 100 chr8:116633531-116633631 6.48e-01 100 chr5:135102488-135102588 9.99e-01 100 chr8:64660616-64660716 1.38e-02 36_[-2(5.92e-05)]_53 chr2:18024784-18024884 1.55e-02 23_[+2(2.06e-05)]_66 chr16:14950465-14950565 2.04e-02 100 chr19:37575981-37576081 2.29e-02 54_[+1(4.69e-05)]_25 chr3:138040125-138040225 8.51e-02 74_[+2(7.76e-05)]_15 chr3:65416077-65416177 2.88e-01 100 chr9:122544288-122544388 7.51e-01 100 chr5:107651959-107652059 2.06e-01 100 chr6:100578888-100578988 8.08e-01 100 chr10:67552957-67553057 1.69e-01 100 chr11:17401123-17401223 1.45e-02 18_[+1(2.41e-06)]_61 chr1:37404167-37404267 9.50e-01 100 chr2:134480475-134480575 5.14e-01 100 chr13:44532949-44533049 1.06e-04 49_[-2(6.38e-05)]_20_[-3(5.96e-06)]_\ 9 chr1:59544193-59544293 7.23e-01 100 chr8:27460718-27460818 3.44e-01 100 chr19:37530225-37530325 6.57e-01 100 chr5:104828392-104828492 2.12e-02 31_[-1(1.70e-05)]_48 chr15:66876613-66876713 7.18e-01 100 chr2:27410802-27410902 9.67e-01 100 chr2:67815600-67815700 2.40e-01 100 chr17:26725896-26725996 4.85e-01 100 chr6:17215016-17215116 6.34e-01 100 chr1:75061651-75061751 4.99e-05 71_[+1(1.72e-06)]_8 chr5:91416465-91416565 1.35e-01 100 chr4:116404955-116405055 3.70e-03 60_[-3(2.08e-05)]_29 chr17:65926235-65926335 8.76e-01 100 chr13:41505754-41505854 9.25e-01 100 chr15:86254386-86254486 1.05e-06 14_[+1(1.11e-09)]_65 chr18:46614728-46614828 4.86e-01 100 chr9:69917828-69917928 5.39e-01 100 chr10:70655643-70655743 5.94e-02 60_[+1(5.92e-05)]_19 chr17:28945771-28945871 3.74e-01 100 chr5:22964593-22964693 6.23e-08 37_[+1(4.25e-07)]_10_[+2(4.95e-07)]_\ 21 chr14:23610065-23610165 4.66e-04 80_[-2(8.70e-06)]_9 chr15:13775535-13775635 5.25e-01 100 chr11:116067339-11606743 5.61e-01 100 chr3:79046171-79046271 2.16e-01 100 chr4:107798898-107798998 6.48e-01 100 chr17:43407009-43407109 8.53e-01 100 chr2:4816403-4816503 5.84e-01 100 chr7:27857575-27857675 2.74e-03 44_[-3(2.46e-05)]_45 chr18:64692275-64692375 4.46e-01 100 chr7:47133501-47133601 7.38e-01 100 chr2:134484692-134484792 5.64e-01 100 chr6:24591349-24591449 1.94e-05 81_[+3(1.25e-06)]_8 chr17:34960219-34960319 9.58e-01 100 chr6:138020934-138021034 1.09e-03 18_[+2(2.16e-06)]_71 chr19:26852595-26852695 7.48e-01 100 chr11:70559093-70559193 3.71e-03 15_[+3(7.70e-05)]_37_[-2(4.09e-05)]_\ 26 chr19:8548484-8548584 4.02e-01 100 chr14:11583032-11583132 9.37e-02 100 chr10:8362022-8362122 7.18e-01 100 chrX:36322105-36322205 2.11e-01 100 chr13:63766865-63766965 3.06e-01 100 chr12:70552065-70552165 3.46e-03 25_[-2(5.92e-05)]_64 chr10:94887047-94887147 4.87e-02 30_[+2(2.70e-05)]_59 chr8:26720692-26720792 4.80e-01 100 chr2:60107757-60107857 7.50e-01 100 chr7:25635020-25635120 1.79e-01 100 chr19:5822636-5822736 8.46e-01 100 chr3:129917496-129917596 6.46e-02 100 chr3:82836985-82837085 2.78e-03 29_[-3(1.22e-05)]_60 chr16:45365480-45365580 6.77e-02 4_[-1(5.27e-05)]_75 chr4:57135893-57135993 5.21e-06 16_[-1(9.27e-05)]_38_[-3(3.95e-06)]_\ 14 chr1:40293593-40293693 5.07e-03 64_[-2(3.09e-05)]_25 chr8:130906173-130906273 1.93e-03 74_[-2(3.07e-06)]_15 chr1:188149367-188149467 2.92e-02 35_[+2(2.70e-05)]_54 chr6:149164541-149164641 8.38e-03 81_[-2(5.19e-05)]_8 chr19:40266427-40266527 1.70e-01 100 chr12:105327532-10532763 5.83e-01 100 chr18:81518478-81518578 3.73e-01 100 chr6:149173379-149173479 3.88e-04 9_[-1(5.18e-07)]_19_[-1(5.27e-05)]_\ 30 chr5:140688784-140688884 9.14e-02 100 chr10:116874023-11687412 4.23e-01 100 chr6:115491788-115491888 7.83e-01 100 chr15:61953182-61953282 5.74e-04 20_[-2(5.92e-06)]_69 chr2:152373804-152373904 1.04e-05 26_[+3(3.00e-06)]_28_[-2(3.27e-05)]_\ 24 chr13:98623370-98623470 4.07e-02 100 chr18:64498324-64498424 5.53e-02 100 chr15:53000113-53000213 7.33e-02 100 chr6:134158191-134158291 9.40e-01 100 chr9:74639010-74639110 5.16e-02 100 chr4:81376286-81376386 8.20e-05 89_[+2(3.07e-06)] chr10:78080944-78081044 1.22e-04 38_[-3(1.29e-05)]_51 chr3:60329148-60329248 5.00e-02 28_[-2(5.19e-05)]_61 chr7:79136041-79136141 9.65e-01 100 chr4:96773342-96773442 3.94e-01 100 chr4:76587503-76587603 4.34e-01 100 chr9:61116995-61117095 5.05e-02 100 chr11:78659686-78659786 5.61e-05 66_[+3(8.16e-07)]_23 chr7:78342868-78342968 3.02e-02 100 chr5:102864171-102864271 4.83e-01 100 chr1:155328707-155328807 1.77e-01 100 chr9:79603028-79603128 8.92e-02 100 chr11:17636061-17636161 2.10e-04 15_[-1(4.16e-05)]_52_[+2(4.09e-05)]_\ 1 chr18:59377343-59377443 4.08e-06 39_[+1(4.00e-08)]_40 chr5:125812808-125812908 6.64e-01 100 chr14:9258417-9258517 7.39e-02 88_[+2(7.09e-05)]_1 chr3:142402844-142402944 1.14e-03 35_[-3(6.94e-06)]_54 chr14:70028360-70028460 2.48e-01 100 chr1:160643741-160643841 4.51e-03 42_[+3(4.24e-05)]_47 chr15:38277348-38277448 2.81e-03 46_[+1(4.69e-07)]_33 chr8:71402281-71402381 4.54e-01 100 chr15:54874887-54874987 2.78e-01 100 chr1:65453966-65454066 9.31e-04 89_[+3(8.46e-06)] chr3:18167442-18167542 5.61e-02 100 chr13:105879262-10587936 1.02e-01 100 chr10:120786565-12078666 1.19e-03 40_[+3(4.95e-06)]_49 chr15:3670681-3670781 2.35e-01 100 chr5:53336363-53336463 1.78e-04 52_[-2(1.97e-06)]_37 chr6:17121348-17121448 4.81e-02 100 chr2:112435335-112435435 2.09e-06 63_[-3(1.11e-05)]_4_[-2(1.33e-06)]_\ 11 chr2:134581754-134581854 6.76e-01 100 chr18:76130805-76130905 9.87e-01 100 chr14:46327033-46327133 9.73e-01 100 chr7:122937745-122937845 2.52e-05 16_[-1(3.96e-09)]_63 chr14:66334971-66335071 3.15e-01 100 chr9:121790945-121791045 2.03e-01 100 chr11:112872338-11287243 7.73e-01 100 chr7:141944993-141945093 6.84e-01 100 chr19:29194734-29194834 1.05e-01 100 chr2:67561498-67561598 1.14e-06 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16_[-3(4.91e-05)]_73 chr16:87628014-87628114 9.78e-02 100 chr16:24084034-24084134 1.88e-02 67_[-2(4.61e-05)]_22 chr18:60392735-60392835 2.02e-04 65_[-3(4.95e-06)]_4_[-2(5.92e-05)]_\ 9 chr6:149116424-149116524 7.82e-01 100 chr12:105324685-10532478 4.43e-01 100 chr15:4677206-4677306 1.42e-05 20_[+1(1.80e-08)]_59 chr1:58128232-58128332 7.12e-02 100 chr15:66912511-66912611 7.92e-04 1_[-2(3.07e-06)]_88 chr12:78157738-78157838 4.37e-01 100 chr6:29770304-29770404 6.74e-02 67_[-1(6.27e-05)]_12 chr13:104392103-10439220 3.17e-01 100 chr13:41908578-41908678 4.00e-04 50_[+3(1.69e-05)]_39 chr13:102488718-10248881 3.01e-02 54_[-2(2.91e-05)]_35 chr1:157474827-157474927 2.20e-01 100 chr19:44046642-44046742 8.87e-09 10_[+1(4.00e-08)]_46_[-3(4.95e-06)]_\ 12 chr11:16603094-16603194 7.79e-01 100 chr2:8045771-8045871 1.39e-03 5_[+2(3.09e-05)]_84 chr7:47119877-47119977 7.36e-01 100 chr9:102884097-102884197 3.42e-01 100 chr8:73088598-73088698 1.19e-04 33_[-3(1.45e-06)]_42_[-3(7.70e-05)]_\ 3 chr11:80260429-80260529 3.16e-04 32_[-2(7.47e-06)]_57 chr6:141539206-141539306 3.74e-02 100 chr2:143702295-143702395 6.76e-01 100 chr18:3423730-3423830 1.37e-01 100 chr5:123540847-123540947 1.13e-04 25_[-3(3.00e-06)]_48_[-2(1.65e-05)]_\ 5 chr3:10128984-10129084 9.07e-01 100 chr15:66440968-66441068 5.94e-01 100 chr1:82154910-82155010 4.74e-06 33_[-3(7.97e-05)]_17_[+3(3.76e-06)]_\ 28 chr6:94499297-94499397 9.86e-01 100 chr3:133403342-133403442 5.34e-01 100 chr10:94615187-94615287 3.50e-04 31_[-2(4.94e-06)]_58 chr6:67387841-67387941 1.87e-02 100 chr13:75504365-75504465 1.49e-04 76_[+3(3.00e-06)]_13 chr2:143987022-143987122 4.46e-01 100 chr3:97792114-97792214 2.65e-03 21_[-2(3.80e-06)]_68 chr2:147386453-147386553 6.22e-01 100 chr3:82819110-82819210 9.75e-01 100 chr19:12140911-12141011 9.36e-01 100 chr2:4922292-4922392 2.76e-02 77_[+3(3.76e-05)]_12 chr14:70722627-70722727 6.59e-02 100 chr16:23317978-23318078 2.89e-03 8_[+3(2.08e-05)]_81 chr1:60883902-60884002 4.33e-01 100 chr2:50187296-50187396 1.96e-05 63_[+2(9.63e-06)]_26 chr2:63348603-63348703 4.55e-03 62_[+3(9.58e-05)]_27 chr8:120239701-120239801 3.47e-01 100 chr2:147789466-147789566 2.64e-01 100 chr13:24444990-24445090 4.97e-01 100 chr10:26732774-26732874 5.43e-04 71_[+2(6.38e-05)]_2_[-3(3.97e-05)]_\ 5 chr12:8096291-8096391 6.83e-02 100 chr9:67672243-67672343 3.06e-04 48_[+2(1.71e-05)]_5_[-2(4.95e-07)]_\ 25 chr17:84719862-84719962 4.28e-01 100 chr18:47473024-47473124 4.95e-01 100 chr4:97599818-97599918 8.06e-05 66_[+2(4.95e-07)]_23 chr12:105312378-10531247 6.20e-01 100 chr8:46324797-46324897 9.63e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: scc-pg7 ********************************************************************************