Invoking: fasta-get-markov -nostatus -m 1 < Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa 1> Dynamic_Sex-independent_Output/background Finished invoke: name: bg status: 0 time: 0.035875 Invoking: getsize Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.033197 Invoking: fasta-most -min 50 < Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.091099 Invoking: fasta-center -len 100 < Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa 1> Dynamic_Sex-independent_Output/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.111952 Invoking: fasta-dinucleotide-shuffle -f Dynamic_Sex-independent_Output/seqs-centered -t -dinuc 1> Dynamic_Sex-independent_Output/seqs-shuffled Finished invoke: name: shuffle_seqs status: 0 time: 1.19112 Invoking: fasta-subsample Dynamic_Sex-independent_Output/seqs-centered 600 -rest Dynamic_Sex-independent_Output/seqs-discarded 1> Dynamic_Sex-independent_Output/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.072015 Invoking: meme Dynamic_Sex-independent_Output/seqs-sampled -oc Dynamic_Sex-independent_Output/meme_out -dna -mod anr -nmotifs 3 -minw 6 -maxw 30 -bfile Dynamic_Sex-independent_Output/background -p 16 -revcomp -nostatus Finished invoke: name: meme status: 0 time: 106.291498 Invoking: dreme -v 1 -oc Dynamic_Sex-independent_Output/dreme_out -p Dynamic_Sex-independent_Output/seqs-centered -n Dynamic_Sex-independent_Output/seqs-shuffled -png Finished invoke: name: dreme status: 0 time: 91.252147 Invoking: centrimo -seqlen 500 -verbosity 1 -oc Dynamic_Sex-independent_Output/centrimo_out -bgfile Dynamic_Sex-independent_Output/background Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: centrimo status: 0 time: 17.915253 Invoking: tomtom -verbosity 1 -oc Dynamic_Sex-independent_Output/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile Dynamic_Sex-independent_Output/background Dynamic_Sex-independent_Output/meme_out/meme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: meme_tomtom status: 0 time: 3.405938 Invoking: tomtom -verbosity 1 -oc Dynamic_Sex-independent_Output/dreme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile Dynamic_Sex-independent_Output/background Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: dreme_tomtom status: 0 time: 1.9767 Invoking: tomtom -verbosity 1 -text -thresh 0.1 Dynamic_Sex-independent_Output/combined.meme Dynamic_Sex-independent_Output/combined.meme 1> Dynamic_Sex-independent_Output/motif_alignment.txt Finished invoke: name: align status: 0 time: 1.511756 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_1 -bgfile Dynamic_Sex-independent_Output/background -primary TCYWGGAA Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo1 status: 0 time: 11.362929 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_2 -bgfile Dynamic_Sex-independent_Output/background -primary 2 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo2 status: 0 time: 5.538756 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_3 -bgfile Dynamic_Sex-independent_Output/background -primary AGGBCA Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo3 status: 0 time: 27.397063 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_4 -bgfile Dynamic_Sex-independent_Output/background -primary MA0102.3 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo4 status: 0 time: 18.497414 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_5 -bgfile Dynamic_Sex-independent_Output/background -primary MA0161.1 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo5 status: 0 time: 41.461797 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_6 -bgfile Dynamic_Sex-independent_Output/background -primary RTMAATA Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo6 status: 0 time: 9.115216 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_7 -bgfile Dynamic_Sex-independent_Output/background -primary 3 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo7 status: 0 time: 8.337851 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_8 -bgfile Dynamic_Sex-independent_Output/background -primary ASAAACA Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo8 status: 0 time: 10.592554 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_9 -bgfile Dynamic_Sex-independent_Output/background -primary UP00079_2 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa ./uniprobe_mouse.meme Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo9 status: 0 time: 16.783856 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_10 -bgfile Dynamic_Sex-independent_Output/background -primary CCCRCCCC Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo10 status: 0 time: 4.004846 Invoking: spamo -verbosity 1 -oc Dynamic_Sex-independent_Output/spamo_out_11 -bgfile Dynamic_Sex-independent_Output/background -primary MA0490.1 Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo11 status: 0 time: 10.033239 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_1 --bgfile Dynamic_Sex-independent_Output/background --motif TCYWGGAA Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo1 status: 0 time: 0.606949 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_2 --bgfile Dynamic_Sex-independent_Output/background --motif 2 Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo2 status: 0 time: 0.978293 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_3 --bgfile Dynamic_Sex-independent_Output/background --motif AGGBCA Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo3 status: 0 time: 0.248516 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_4 --bgfile Dynamic_Sex-independent_Output/background --motif MA0102.3 ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo4 status: 0 time: 0.379873 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_5 --bgfile Dynamic_Sex-independent_Output/background --motif MA0161.1 ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo5 status: 0 time: 0.312272 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_6 --bgfile Dynamic_Sex-independent_Output/background --motif RTMAATA Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo6 status: 0 time: 0.274331 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_7 --bgfile Dynamic_Sex-independent_Output/background --motif 3 Dynamic_Sex-independent_Output/meme_out/meme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo7 status: 0 time: 1.07926 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_8 --bgfile Dynamic_Sex-independent_Output/background --motif ASAAACA Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo8 status: 0 time: 0.319494 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_9 --bgfile Dynamic_Sex-independent_Output/background --motif UP00079_2 ./uniprobe_mouse.meme Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo9 status: 0 time: 0.559146 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_10 --bgfile Dynamic_Sex-independent_Output/background --motif CCCRCCCC Dynamic_Sex-independent_Output/dreme_out/dreme.xml Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo10 status: 0 time: 0.392258 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Dynamic_Sex-independent_Output/fimo_out_11 --bgfile Dynamic_Sex-independent_Output/background --motif MA0490.1 ./JASPAR_CORE_2014_vertebrates.meme Dynamic_Sex-independent_Output/Dynamic_Sex-independent.fa Finished invoke: name: fimo11 status: 0 time: 0.394608 Writing output Done