The name of the query motif.

[close ]

The alternate name of the query motif.

[close ]

A link to more information about the query motif.

[close ]

The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.

[close ]

The number of significant matches of the query motif to a motif in the target database.

[close ]

Links to the first 20 matches of the query motif to a motif in the target database.

[close ]

The database name.

[close ]

The number of motifs read from the motif database minus the number that had to be discarded due to conflicting IDs.

[close ]

The number of motifs that had a match with at least one of the query motifs.

[close ]

The summary gives information about the matched motif. Mouse over each row to show further help buttons for each specific title.

[close ]

The name of the matched motif.

[close ]

The alternative name of the matched motif.

[close ]

The database containing the matched motif.

[close ]

The probability that the match occurred by random chance according to the null model.

[close ]

The expected number of false positives in the matches up to this point.

[close ]

The minimum False Discovery Rate required to include the match.

[close ]

The number of letters that overlaped in the optimal alignment.

[close ]

The offset of the query motif to the matched motif in the optimal alignment.

[close ]

The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.

[close ]

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

[close ]

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

[close ]

Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.

[close ]

Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.

[close ]

Toggle adding pseudocounts for Small Sample Correction.

[close ]

Toggle a full reverse complement of the alignment.

[close ]

Specify the width of the generated logo.

[close ]

Specify the height of the generated logo.

[close ]

[close ]

[close ]

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007. [full text]

Query Motifs  |  Target Databases  |  Matches  |  Program information

Query Motifs

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Name 

Alt. Name 

Preview 

Matches 

List 
ATYGATY DREME
ATTGATT
1 UP00083_2 (Tcf7l2_secondary)
TRTTTR DREME
TGTTTG
3 MA0042.1 (FOXI1),  MA0041.1 (Foxd3),  UP00037_1 (Zfp105_primary)
CAAAGKY DREME
CAAAGGT
10 MA0484.1 (HNF4G),  MA0017.1 (NR2F1),  MA0114.2 (HNF4A),  MA0115.1 (NR1H2::RXRA),  UP00048_1 (Rara_primary),  MA0512.1 (Rxra),  UP00009_1 (Nr2f2_primary),  MA0065.2 (PPARG::RXRA),  MA0504.1 (NR2C2),  MA0143.3 (Sox2)
CMSAG DREME
CACAG
1 MA0522.1 (Tcf3)
CCWGGAA DREME
CCTGGAA
4 MA0463.1 (Bcl6),  MA0137.3 (STAT1),  MA0473.1 (ELF1),  MA0518.1 (Stat4)
CACGKG DREME
CACGTG
10 MA0004.1 (Arnt),  MA0104.3 (Mycn),  MA0059.1 (MYC::MAX),  MA0464.1 (Bhlhe40),  UP00060_1 (Max_primary),  UP00050_1 (Bhlhb2_primary),  MA0093.2 (USF1),  UP00050_2 (Bhlhb2_secondary),  MA0147.2 (Myc),  MA0259.1 (HIF1A::ARNT)
TGGCW DREME
TGGCA
3 MA0161.1 (NFIC),  MA0119.1 (TLX1::NFIC),  MA0092.1 (Hand1::Tcfe2a)
AATAAAW DREME
AATAAAA
7 UP00180_1 (Hoxd13_2356.1),  UP00217_1 (Hoxa10_2318.1),  UP00134_1 (Hoxb13_3479.1),  UP00121_1 (Hoxd10_2368.2),  UP00133_1 (Cdx2_4272.1),  MA0465.1 (CDX2),  UP00240_1 (Cdx1_2245.1)
CCCWCCCC DREME
CCCTCCCC
17 MA0599.1 (KLF5),  MA0079.3 (SP1),  MA0162.2 (EGR1),  UP00021_1 (Zfp281_primary),  UP00043_2 (Bcl6b_secondary),  UP00033_2 (Zfp410_secondary),  MA0516.1 (SP2),  UP00022_1 (Zfp740_primary),  MA0469.1 (E2F3),  UP00079_2 (Esrra_secondary)
TGACCTW DREME
TGACCTT
16 MA0071.1 (RORA_1),  MA0592.1 (ESRRA),  MA0115.1 (NR1H2::RXRA),  MA0141.2 (Esrrb),  MA0160.1 (NR4A2),  UP00079_1 (Esrra_primary),  UP00048_1 (Rara_primary),  UP00009_1 (Nr2f2_primary),  MA0505.1 (Nr5a2),  MA0065.2 (PPARG::RXRA)

Target Databases

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Database 

Number of Motifs 

Motifs Matched 
JASPAR_CORE_2014_vertebrates.meme 205 41
uniprobe_mouse.meme 386 24

Matches to Query: ATYGATY (DREME)

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Summary 

Alignment 
Name 
 UP00083_2
Alt. Name 
 Tcf7l2_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.00152247
E-value 
 0.899778
q-value 
 0.279908
Overlap 
 7
Offset 
 6
Orientation 
 Reverse Complement
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Matches to Query: TRTTTR (DREME)

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Summary 

Alignment 
Name 
 MA0042.1
Alt. Name 
 FOXI1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 5.28255e-07
E-value 
 0.000312199
q-value 
 0.000620566
Overlap 
 6
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0041.1
Alt. Name 
 Foxd3
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000211717
E-value 
 0.125124
q-value 
 0.124357
Overlap 
 6
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00037_1
Alt. Name 
 Zfp105_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000463655
E-value 
 0.27402
q-value 
 0.181559
Overlap 
 6
Offset 
 7
Orientation 
 Reverse Complement
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Matches to Query: CAAAGKY (DREME)

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Summary 

Alignment 
Name 
 MA0484.1
Alt. Name 
 HNF4G
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.04649e-06
E-value 
 0.000618475
q-value 
 0.00122949
Overlap 
 7
Offset 
 6
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0017.1
Alt. Name 
 NR2F1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 7.9147e-06
E-value 
 0.00467759
q-value 
 0.00464939
Overlap 
 7
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0114.2
Alt. Name 
 HNF4A
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.25784e-05
E-value 
 0.00743384
q-value 
 0.00492602
Overlap 
 7
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0115.1
Alt. Name 
 NR1H2::RXRA
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000180583
E-value 
 0.106725
q-value 
 0.0431904
Overlap 
 7
Offset 
 6
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00048_1
Alt. Name 
 Rara_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000203947
E-value 
 0.120533
q-value 
 0.0431904
Overlap 
 7
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0512.1
Alt. Name 
 Rxra
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000220571
E-value 
 0.130357
q-value 
 0.0431904
Overlap 
 7
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00009_1
Alt. Name 
 Nr2f2_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.00052154
E-value 
 0.30823
q-value 
 0.0875348
Overlap 
 7
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0065.2
Alt. Name 
 PPARG::RXRA
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000637882
E-value 
 0.376988
q-value 
 0.0936789
Overlap 
 7
Offset 
 6
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0504.1
Alt. Name 
 NR2C2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00153304
E-value 
 0.906025
q-value 
 0.195689
Overlap 
 7
Offset 
 6
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0143.3
Alt. Name 
 Sox2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00166562
E-value 
 0.984382
q-value 
 0.195689
Overlap 
 6
Offset 
 2
Orientation 
 Reverse Complement
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Matches to Query: CMSAG (DREME)

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Summary 

Alignment 
Name 
 MA0522.1
Alt. Name 
 Tcf3
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000973299
E-value 
 0.57522
q-value 
 0.696652
Overlap 
 5
Offset 
 0
Orientation 
 Normal
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Matches to Query: CCWGGAA (DREME)

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Summary 

Alignment 
Name 
 MA0463.1
Alt. Name 
 Bcl6
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000615561
E-value 
 0.363797
q-value 
 0.214381
Overlap 
 7
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0137.3
Alt. Name 
 STAT1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000674542
E-value 
 0.398654
q-value 
 0.214381
Overlap 
 7
Offset 
 3
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0473.1
Alt. Name 
 ELF1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00102898
E-value 
 0.608127
q-value 
 0.214381
Overlap 
 7
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0518.1
Alt. Name 
 Stat4
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00117589
E-value 
 0.694952
q-value 
 0.214381
Overlap 
 7
Offset 
 6
Orientation 
 Reverse Complement
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Matches to Query: CACGKG (DREME)

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Summary 

Alignment 
Name 
 MA0004.1
Alt. Name 
 Arnt
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.61342e-05
E-value 
 0.00953529
q-value 
 0.00937241
Overlap 
 6
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0104.3
Alt. Name 
 Mycn
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 3.46145e-05
E-value 
 0.0204572
q-value 
 0.0100539
Overlap 
 6
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0059.1
Alt. Name 
 MYC::MAX
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 6.92278e-05
E-value 
 0.0409137
q-value 
 0.0134049
Overlap 
 6
Offset 
 3
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0464.1
Alt. Name 
 Bhlhe40
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 9.68011e-05
E-value 
 0.0572094
q-value 
 0.014058
Overlap 
 6
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00060_1
Alt. Name 
 Max_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000126914
E-value 
 0.0750062
q-value 
 0.014745
Overlap 
 6
Offset 
 4
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00050_1
Alt. Name 
 Bhlhb2_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000196133
E-value 
 0.115915
q-value 
 0.0172611
Overlap 
 6
Offset 
 8
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0093.2
Alt. Name 
 USF1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000208
E-value 
 0.122928
q-value 
 0.0172611
Overlap 
 6
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00050_2
Alt. Name 
 Bhlhb2_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000290375
E-value 
 0.171612
q-value 
 0.021085
Overlap 
 6
Offset 
 8
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0147.2
Alt. Name 
 Myc
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00121569
E-value 
 0.718474
q-value 
 0.0784668
Overlap 
 6
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0259.1
Alt. Name 
 HIF1A::ARNT
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00133593
E-value 
 0.789535
q-value 
 0.0816892
Overlap 
 6
Offset 
 1
Orientation 
 Normal
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Matches to Query: TGGCW (DREME)

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Summary 

Alignment 
Name 
 MA0161.1
Alt. Name 
 NFIC
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000281844
E-value 
 0.16657
q-value 
 0.269229
Overlap 
 5
Offset 
 1
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0119.1
Alt. Name 
 TLX1::NFIC
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000529161
E-value 
 0.312734
q-value 
 0.269229
Overlap 
 5
Offset 
 1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0092.1
Alt. Name 
 Hand1::Tcfe2a
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000683375
E-value 
 0.403875
q-value 
 0.269229
Overlap 
 5
Offset 
 4
Orientation 
 Normal
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Matches to Query: AATAAAW (DREME)

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Summary 

Alignment 
Name 
 UP00180_1
Alt. Name 
 Hoxd13_2356.1
Database 
 uniprobe_mouse.meme
p-value 
 0.000104644
E-value 
 0.0618447
q-value 
 0.0721934
Overlap 
 7
Offset 
 5
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00217_1
Alt. Name 
 Hoxa10_2318.1
Database 
 uniprobe_mouse.meme
p-value 
 0.00016127
E-value 
 0.0953106
q-value 
 0.0721934
Overlap 
 7
Offset 
 5
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00134_1
Alt. Name 
 Hoxb13_3479.1
Database 
 uniprobe_mouse.meme
p-value 
 0.000229555
E-value 
 0.135667
q-value 
 0.0721934
Overlap 
 7
Offset 
 5
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00121_1
Alt. Name 
 Hoxd10_2368.2
Database 
 uniprobe_mouse.meme
p-value 
 0.000252507
E-value 
 0.149232
q-value 
 0.0721934
Overlap 
 7
Offset 
 5
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 UP00133_1
Alt. Name 
 Cdx2_4272.1
Database 
 uniprobe_mouse.meme
p-value 
 0.00030868
E-value 
 0.18243
q-value 
 0.0721934
Overlap 
 7
Offset 
 6
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0465.1
Alt. Name 
 CDX2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00144811
E-value 
 0.855831
q-value 
 0.252362
Overlap 
 7
Offset 
 4
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00240_1
Alt. Name 
 Cdx1_2245.1
Database 
 uniprobe_mouse.meme
p-value 
 0.00151065
E-value 
 0.892793
q-value 
 0.252362
Overlap 
 7
Offset 
 6
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: CCCWCCCC (DREME)

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Summary 

Alignment 
Name 
 MA0599.1
Alt. Name 
 KLF5
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 3.49211e-05
E-value 
 0.0206384
q-value 
 0.0222486
Overlap 
 8
Offset 
 2
Orientation 
 Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 
Name 
 MA0079.3
Alt. Name 
 SP1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 3.844e-05
E-value 
 0.022718
q-value 
 0.0222486
Overlap 
 8
Offset 
 2
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 MA0162.2
Alt. Name 
 EGR1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000117703
E-value 
 0.0695625
q-value 
 0.0355567
Overlap 
 8
Offset 
 2
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 UP00021_1
Alt. Name 
 Zfp281_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000122866
E-value 
 0.0726138
q-value 
 0.0355567
Overlap 
 8
Offset 
 3
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 UP00043_2
Alt. Name 
 Bcl6b_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000181734
E-value 
 0.107405
q-value 
 0.0420742
Overlap 
 8
Offset 
 3
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 UP00033_2
Alt. Name 
 Zfp410_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000268282
E-value 
 0.158555
q-value 
 0.0480531
Overlap 
 8
Offset 
 4
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 MA0516.1
Alt. Name 
 SP2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000290583
E-value 
 0.171735
q-value 
 0.0480531
Overlap 
 8
Offset 
 2
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00022_1
Alt. Name 
 Zfp740_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.000363042
E-value 
 0.214558
q-value 
 0.052531
Overlap 
 8
Offset 
 3
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 MA0469.1
Alt. Name 
 E2F3
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000736882
E-value 
 0.435497
q-value 
 0.0916504
Overlap 
 8
Offset 
 2
Orientation 
 Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 
Name 
 UP00079_2
Alt. Name 
 Esrra_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000831639
E-value 
 0.491499
q-value 
 0.0916504
Overlap 
 8
Offset 
 9
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00096_2
Alt. Name 
 Sox13_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000916786
E-value 
 0.54182
q-value 
 0.0916504
Overlap 
 8
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00099_2
Alt. Name 
 Ascl2_secondary
Database 
 uniprobe_mouse.meme
p-value 
 0.000999907
E-value 
 0.590945
q-value 
 0.0916504
Overlap 
 8
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0528.1
Alt. Name 
 ZNF263
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00104924
E-value 
 0.6201
q-value 
 0.0916504
Overlap 
 8
Offset 
 3
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00002_1
Alt. Name 
 Sp4_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.00110844
E-value 
 0.655089
q-value 
 0.0916504
Overlap 
 8
Offset 
 9
Orientation 
 Normal
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Summary 

Alignment 
Name 
 UP00093_1
Alt. Name 
 Klf7_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.00120292
E-value 
 0.710927
q-value 
 0.0928316
Overlap 
 8
Offset 
 5
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0039.2
Alt. Name 
 Klf4
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00156274
E-value 
 0.923577
q-value 
 0.108402
Overlap 
 8
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00007_1
Alt. Name 
 Egr1_primary
Database 
 uniprobe_mouse.meme
p-value 
 0.00159198
E-value 
 0.940858
q-value 
 0.108402
Overlap 
 8
Offset 
 0
Orientation 
 Normal
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Matches to Query: TGACCTW (DREME)

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Summary 

Alignment 
Name 
 MA0071.1
Alt. Name 
 RORA_1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 2.54776e-06
E-value 
 0.00150573
q-value 
 0.0029677
Overlap 
 7
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0592.1
Alt. Name 
 ESRRA
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.01242e-05
E-value 
 0.00598339
q-value 
 0.00484386
Overlap 
 7
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0115.1
Alt. Name 
 NR1H2::RXRA
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.24753e-05
E-value 
 0.00737292
q-value 
 0.00484386
Overlap 
 7
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0141.2
Alt. Name 
 Esrrb
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 1.97707e-05
E-value 
 0.0116845
q-value 
 0.00538931
Overlap 
 7
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0160.1
Alt. Name 
 NR4A2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 2.31336e-05
E-value 
 0.013672
q-value 
 0.00538931
Overlap 
 7
Offset 
 1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00079_1
Alt. Name 
 Esrra_primary
Database 
 uniprobe_mouse.meme
p-value 
 3.6246e-05
E-value 
 0.0214214
q-value 
 0.00703669
Overlap 
 7
Offset 
 5
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00048_1
Alt. Name 
 Rara_primary
Database 
 uniprobe_mouse.meme
p-value 
 4.90222e-05
E-value 
 0.0289721
q-value 
 0.00815746
Overlap 
 7
Offset 
 4
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 UP00009_1
Alt. Name 
 Nr2f2_primary
Database 
 uniprobe_mouse.meme
p-value 
 6.81883e-05
E-value 
 0.0402993
q-value 
 0.00992842
Overlap 
 7
Offset 
 4
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0505.1
Alt. Name 
 Nr5a2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000129579
E-value 
 0.0765811
q-value 
 0.0167707
Overlap 
 7
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0065.2
Alt. Name 
 PPARG::RXRA
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000390918
E-value 
 0.231032
q-value 
 0.045535
Overlap 
 7
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0017.1
Alt. Name 
 NR2F1
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000441599
E-value 
 0.260985
q-value 
 0.0465948
Overlap 
 7
Offset 
 0
Orientation 
 Normal
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Summary 

Alignment 
Name 
 MA0512.1
Alt. Name 
 Rxra
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000480019
E-value 
 0.283691
q-value 
 0.0465948
Overlap 
 7
Offset 
 2
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0072.1
Alt. Name 
 RORA_2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.000684285
E-value 
 0.404412
q-value 
 0.0613132
Overlap 
 7
Offset 
 1
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0258.2
Alt. Name 
 ESR2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.0010589
E-value 
 0.625811
q-value 
 0.0881025
Overlap 
 6
Offset 
 9
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0504.1
Alt. Name 
 NR2C2
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.00117176
E-value 
 0.692509
q-value 
 0.0909928
Overlap 
 7
Offset 
 0
Orientation 
 Reverse Complement
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Summary 

Alignment 
Name 
 MA0066.1
Alt. Name 
 PPARG
Database 
 JASPAR_CORE_2014_vertebrates.meme
p-value 
 0.0013298
E-value 
 0.785912
q-value 
 0.0968114
Overlap 
 7
Offset 
 12
Orientation 
 Reverse Complement
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TOMTOM version
4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from Static_Male-biased_Output/background):
A: 0.274   C: 0.227   G: 0.227   T: 0.274

Result calculation took 1.858 seconds
show model parameters...