Database and Motifs High-scoring Motif Occurrences Debugging Information



FIMO - Motif search tool

FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE Static_Male-biased_Output/Static_Male-biased.fa
Database contains 1954 sequences, 977000 residues

MOTIFS ./JASPAR_CORE_2014_vertebrates.meme (nucleotide)

MOTIF WIDTH BEST POSSIBLE MATCH
MA0004.1 6 CACGTG
MA0006.1 6 TGCGTG
MA0009.1 11 CTAGGTGTGAA
MA0017.1 14 TGACCTTTGAACCT
MA0019.1 12 AGATGCAATCCC
MA0025.1 11 TTATGTAACAT
MA0027.1 11 AAGTAGTGTTC
MA0028.1 10 GAGCCGGAAG
MA0029.1 14 AAGATAAGATAATA
MA0030.1 14 CAAACGTAAACAAT
MA0031.1 8 GTAAACAT
MA0032.1 8 GGTAAGTA
MA0033.1 8 TATACATA
MA0038.1 10 CAAATCACTG
MA0040.1 11 TATTGTTTATT
MA0041.1 12 GAATGTTTGTTT
MA0042.1 12 GGATGTTTGTTT
MA0043.1 12 GGTTACGTAATT
MA0046.1 14 GGTTAATAATTAAC
MA0048.1 12 GCGCAGCTGCGT
MA0051.1 18 GGAAAGTGAAAGCAAAAC
MA0056.1 6 TGGGGA
MA0057.1 10 GTAGGGGGAA
MA0059.1 11 GAGCACGTGGT
MA0063.1 7 TTAATTG
MA0066.1 20 GTAGGTCACGGTGACCTACT
MA0067.1 8 AGTCACGG
MA0068.1 30 GAAAAATTTCCAATACTCCACTCCCCCCCC
MA0069.1 14 TTCACGCATGAGTT
MA0070.1 12 CCATCAATCAAA
MA0071.1 10 ATCAAGGTCA
MA0072.1 14 TATAAGTAGGTCAA
MA0073.1 20 CCCCAAACCACCCCCCCCCA
MA0074.1 15 GGGTCATCGAGTTCA
MA0075.1 5 AATTA
MA0077.1 9 CCATTGTTC
MA0078.1 9 TTCATTGTC
MA0081.1 7 AGAGGAA
MA0084.1 9 GTAAACAAT
MA0087.1 7 ATTGTTT
MA0088.1 20 GATTTCCCATAATGCCTTGC
MA0089.1 6 CATGAC
MA0090.1 12 CACATTCCTCCG
MA0091.1 12 CGACCATCTGTT
MA0092.1 10 GGTCTGGCAT
MA0101.1 10 GGGGATTTCC
MA0107.1 10 GGGAATTTCC
MA0108.2 15 GTATAAAAGGCGGGG
MA0109.1 10 AACCTTATAT
MA0111.1 11 AGGGTAACAGC
MA0115.1 17 AAAGGTCAAAGGTCAAC
MA0116.1 15 GGCACCCAGGGGTGC
MA0117.1 8 GCTGACGG
MA0119.1 14 TGGCACCATGCCAA
MA0122.1 9 TTAAGTGGA
MA0124.1 7 ATACTTA
MA0125.1 8 TAATTGGT
MA0130.1 6 ATCCAC
MA0131.1 10 TAACGTCCGC
MA0132.1 6 CTAATT
MA0133.1 7 ACAACAC
MA0135.1 13 AAATTAATTAATC
MA0136.1 9 TACTTCCTT
MA0139.1 19 TGGCCACCAGGGGGCGCTA
MA0142.1 15 CTTTGTTATGCAAAT
MA0149.1 18 GGAAGGAAGGAAGGAAGG
MA0062.2 11 CCGGAAGTGGC
MA0039.2 10 TGGGTGGGGC
MA0138.2 21 TTCAGCACCATGGACAGCGCC
MA0002.2 11 GTCTGTGGTTT
MA0047.2 12 TGTTTACTTAGG
MA0112.2 20 GGCCCAGGTCACCCTGACCT
MA0065.2 15 GTAGGGCAAAGGTCA
MA0151.1 6 ATTAAA
MA0152.1 7 TTTTCCA
MA0153.1 12 TTAATATTTAAC
MA0155.1 12 TGTCAGGGGGCG
MA0156.1 8 CAGGAAAT
MA0157.1 8 TGTAAACA
MA0158.1 8 CACTAATT
MA0159.1 17 AGGTCATGGAGAGGTCA
MA0160.1 8 AAGGTCAC
MA0161.1 6 TTGGCA
MA0163.1 14 GGGGCCCAAGGGGG
MA0164.1 7 CAAGCTT
MA0018.2 8 TGACGTCA
MA0099.2 7 TGACTCA
MA0259.1 8 GGACGTGC
MA0442.1 6 CTTTGT
MA0141.2 12 AGGTCAAGGTCA
MA0145.2 14 CCAGTTCAAACCAG
MA0146.2 14 GGGGCCGAGGCCTG
MA0461.1 8 CAGATGGC
MA0462.1 11 GAAATGACTCA
MA0463.1 14 TTTCCTAGAAAGCA
MA0464.1 11 CTCACGTGCAC
MA0465.1 11 AAGCCATAAAA
MA0466.1 11 TATTGCACAAT
MA0467.1 11 AAGAGGATTAG
MA0468.1 11 TAATTTAATCA
MA0469.1 15 CTCCCGCCCCCACTC
MA0470.1 11 GGGCGGGAAGG
MA0471.1 11 GGGCGGGAAGG
MA0472.1 15 CCCCCGCCCACGCAC
MA0473.1 13 GAACCAGGAAGTG
MA0474.1 11 ACAGGAAGTGG
MA0475.1 11 ACAGGAAGTGG
MA0476.1 11 TGTGACTCATT
MA0477.1 11 GGTGACTCATG
MA0478.1 11 GGATGACTCAT
MA0479.1 11 TCCAATCCACA
MA0480.1 11 TCCTGTTTACA
MA0481.1 15 CAAAAGTAAACAAAG
MA0482.1 11 TCTTATCTCCC
MA0483.1 11 AAATCACAGCA
MA0484.1 15 AGAGTCCAAAGTCCA
MA0485.1 13 GGCCATAAATCAC
MA0486.1 15 CTTCTAGAAGGTTCT
MA0488.1 13 AAGATGATGTCAT
MA0489.1 14 AGGAGATGACTCAT
MA0490.1 11 GGATGACTCAT
MA0491.1 11 GGTGACTCATC
MA0492.1 15 AAAGATGATGTCATC
MA0493.1 11 GGCCACACCCA
MA0494.1 19 TGACCTAAAGTAACCTCTG
MA0495.1 18 GCTGAGTCAGCAATTTTT
MA0496.1 15 CTGAGTCAGCAATTT
MA0497.1 15 ATGCTAAAAATAGAA
MA0498.1 15 AGCTGTCACTCACCT
MA0499.1 13 TGCAGCTGTCCCT
MA0500.1 11 GACAGCTGCAG
MA0501.1 15 ATGACTCAGCAATTT
MA0502.1 15 AAATGGACCAATCAG
MA0503.1 11 AGCCACTCAAG
MA0504.1 15 AGGGGTCAGAGGTCA
MA0505.1 15 AAGTTCAAGGTCAGC
MA0506.1 11 GCGCCTGCGCA
MA0507.1 13 TTCATTTGCATAT
MA0508.1 15 AGAAAGTGAAAGTGA
MA0509.1 14 GTTGCCATGGCAAC
MA0510.1 15 CTCCCTGGCAACAGC
MA0511.1 15 GGGGTTTGTGGTTTG
MA0512.1 11 CAAAGGTCAGA
MA0513.1 13 CTGTCTGTCACCT
MA0514.1 10 CCTTTGTTTT
MA0515.1 10 CCATTGTTTT
MA0516.1 15 GCCCCGCCCCCTCCC
MA0517.1 15 TCAGTTTCATTTTCC
MA0518.1 14 TTTCCAGGAAATGG
MA0519.1 11 ATTTCCAAGAA
MA0520.1 15 CATTTCCTGAGAAAT
MA0521.1 11 AACAGCTGCAG
MA0522.1 11 CACAGCTGCAG
MA0523.1 14 AAAGATCAAAGGAA
MA0524.1 15 CATGGCCCCAGGGCA
MA0525.1 20 AGACATGCCCAGACATGCCC
MA0526.1 11 GTCATGTGACC
MA0527.1 15 CTCTCGCGAGATCTG
MA0528.1 21 GGAGGAGGAGGGGGAGGAGGA
MA0007.2 15 AAGAACAGAATGTTC
MA0102.3 11 ATTGCACAATA
MA0024.2 11 CGGGCGGGAGG
MA0154.2 11 GTCCCCAGGGA
MA0162.2 14 CCCCCGCCCCCGCC
MA0076.2 11 CCACTTCCGGC
MA0258.2 15 AGGTCACCCTGACCT
MA0098.2 15 CCCACTTCCTGTCTC
MA0148.3 15 TCCATGTTTACTTTG
MA0035.3 11 TTCTTATCTGT
MA0036.2 14 AGATTCTTATCTGT
MA0037.2 8 AGATAAGA
MA0114.2 15 CTGGACTTTGGACTC
MA0050.2 21 TTTTACTTTCACTTTCACTTT
MA0058.2 10 AAGCACATGG
MA0052.2 15 AGCTAAAAATAGCAT
MA0100.2 10 CCAACTGCCA
MA0147.2 10 CCATGTGCTT
MA0104.3 8 GCCACGTG
MA0150.2 15 CAGCATGACTCAGCA
MA0105.3 11 GGGAATTTCCC
MA0060.2 18 AGAGTGCTGATTGGTCCA
MA0014.2 19 GAGGGCAGCCAAGCGTGAC
MA0080.3 15 AAAAAGAGGAAGTGA
MA0143.3 8 CCTTTGTT
MA0079.3 11 GCCCCGCCCCC
MA0083.2 18 CATGCCCAAATAAGGCAA
MA0137.3 11 TTTCCAGGAAA
MA0144.2 11 CTTCTGGGAAA
MA0140.2 18 CTTATCTGTGAGGAGCAG
MA0003.2 15 CATTGCCTCAGGGCA
MA0106.2 15 ACATGCCCAGACATG
MA0093.2 11 GCCACGTGACC
MA0095.2 12 CAAGATGGCGGC
MA0103.2 9 CCTCACCTG
MA0591.1 15 AGGATGACTCAGCAC
MA0592.1 11 CCAAGGTCACA
MA0593.1 11 AAGTAAACAAA
MA0594.1 11 GCCATAAATCA
MA0595.1 10 ATCACCCCAC
MA0596.1 10 ATGGGGTGAT
MA0597.1 9 CTGCCCGCA
MA0598.1 8 CCTTCCTG
MA0599.1 10 GCCCCGCCCC
MA0600.1 19 GTTGCCATGGCAACCGCGG
MA0113.2 15 AGAACAGAATGTTCT

Random model letter frequencies (from Static_Male-biased_Output/background):
A 0.274 C 0.227 G 0.227 T 0.274


SECTION I: HIGH-SCORING MOTIF OCCURRENCES

Motif Sequence Name Strand Start End p-value q-value Matched Sequence
MA0014.2 chr5 + 3494243 3494261 6.49e-07 0.487 GAGAGCACTCAAGCGTAAA
MA0014.2 chr7 + 108446773 108446791 1.86e-06 0.487 CTGTGCAGCCAGGTGTAGC
MA0014.2 chr15 + 61849303 61849321 2.62e-06 0.487 GAAGGCAATGAACCGAGGC
MA0014.2 chr18 + 76051808 76051826 2.72e-06 0.487 AAAGGCAGCAAACCGGAGC
MA0014.2 chr16 76454305 76454323 3.44e-06 0.487 GAAGGCAGCCAGCCGAGCC
MA0014.2 chr8 107577620 107577638 3.53e-06 0.487 AAGGCCACTCAGGCAGGGC
MA0014.2 chr4 + 114937560 114937578 3.88e-06 0.487 GTAGTCTGCCATGCATGAC
MA0014.2 chr1 94728151 94728169 3.93e-06 0.487 GGGAGCGCCCGGGCGGGGC
MA0014.2 chr19 + 21705376 21705394 4.37e-06 0.487 CAAAGCATGCAAGCGTGAC
MA0014.2 chr15 + 82466497 82466515 4.53e-06 0.487 TGGGGCAGCCATCCAAGGC
MA0014.2 chrX 138432995 138433013 4.75e-06 0.487 GTAACCAGTGAAGCAAGAA
MA0014.2 chr1 + 51566072 51566090 4.92e-06 0.487 CAGCTCACCCAAGCATGAG
MA0014.2 chr12 81888956 81888974 4.98e-06 0.487 GTCTCCAGCCGTGCGTGGC
MA0014.2 chr3 129296079 129296097 5.16e-06 0.487 CAAGTCAGCAGGGCAGAAC
MA0014.2 chr11 16738790 16738808 5.79e-06 0.487 GAGGGCAGTGAAGTAGGTC
MA0014.2 chr4 53250958 53250976 5.86e-06 0.487 ATGGGCAGCCGGGCAAATC
MA0014.2 chr7 + 141932121 141932139 5.99e-06 0.487 GTGAGCAATGGGGCAGAAC
MA0014.2 chr11 16597978 16597996 6.13e-06 0.487 AGGATCAGCCAAGCACGTC
MA0014.2 chr2 + 72651541 72651559 6.13e-06 0.487 CAGTTCAGTGAAGCCTGGC
MA0014.2 chr14 + 66391928 66391946 6.57e-06 0.487 AAAGTTAGTGAAGCATGAA
MA0014.2 chr11 + 114549090 114549108 6.64e-06 0.487 GAGTCAAGCCAAGCATGAA
MA0014.2 chr9 94238799 94238817 6.64e-06 0.487 GTAGTCAACCAGCCATGAA
MA0014.2 chr13 104382137 104382155 6.87e-06 0.487 ACGTTCAGCCAACCATAGC
MA0014.2 chr10 121745946 121745964 7.11e-06 0.487 AGCAGCAGGCAAGCATGAC
MA0014.2 chr4 + 134453072 134453090 7.44e-06 0.487 CTGGTCAGTCAAGTGAGTC
MA0014.2 chr18 76176083 76176101 7.87e-06 0.487 GGAGGCAGGGGGGCATGAA
MA0014.2 chr11 112937743 112937761 8.23e-06 0.487 GGGCTTAGCAGAGCAGGGC
MA0014.2 chr2 + 22937412 22937430 8.41e-06 0.487 TTGCCCAGCAGTGCATGGC
MA0014.2 chr13 + 31595981 31595999 8.6e-06 0.487 GAGAGCTGCAAGGCAGGAC
MA0014.2 chr18 + 60929604 60929622 8.6e-06 0.487 AGGGGCAGCAAAGTGTAAT
MA0014.2 chr5 136363702 136363720 8.7e-06 0.487 GGGGGCGGGCAGGCGGGGC
MA0014.2 chr18 + 12846398 12846416 8.79e-06 0.487 GAAGTCACCCGAGCCTAAC
MA0014.2 chr6 + 118356611 118356629 8.99e-06 0.487 AAATCCAGTCAACCGTGAT
MA0014.2 chr19 53478757 53478775 9.19e-06 0.487 CAGGTTAGTGAACCATGAA
MA0014.2 chr9 115060658 115060676 9.6e-06 0.487 CTGGGCAACAGGGCAAGAA
MA0014.2 chr8 12486944 12486962 1.04e-05 0.487 GGAGCCAGCGGTGCGTGGG
MA0014.2 chr14 + 55626577 55626595 1.05e-05 0.487 AGGTGCAGCAAGGTGTGGA
MA0014.2 chr18 81461042 81461060 1.05e-05 0.487 GAGTTCAGTAGTCCAGGAC
MA0014.2 chr11 16662857 16662875 1.06e-05 0.487 TAGGGCAGTCATCTGGGAC
MA0014.2 chr5 + 105353120 105353138 1.06e-05 0.487 ATATTCACCCAACCGTGCC
MA0014.2 chr10 18090555 18090573 1.13e-05 0.487 AGGGGCAGGAAGCCATGGC
MA0014.2 chr7 + 106155426 106155444 1.13e-05 0.487 AGCAGCACCCATGCATGGC
MA0014.2 chr16 23998116 23998134 1.17e-05 0.487 CTGGGCTCCCAACCAGGAC
MA0014.2 chr2 11324178 11324196 1.18e-05 0.487 GAATGCGCTGAAGCAAGAC
MA0014.2 chr3 + 94490456 94490474 1.19e-05 0.487 CTGAGCACCAGGGTGTGAA
MA0014.2 chr5 38888058 38888076 1.22e-05 0.487 GGCTCCAGCCAAGCAGAAC
MA0014.2 chr7 142244966 142244984 1.24e-05 0.487 ACAATCAGCAAAGCAGAAC
MA0014.2 chr16 + 24231890 24231908 1.26e-05 0.487 TGGAGCAGCAGGGCAGGAA
MA0014.2 chr13 40413342 40413360 1.27e-05 0.487 TGGTGCAGTAGAGTGTAAC
MA0014.2 chr1 + 193745963 193745981 1.3e-05 0.488 GTGAGCACTCAGGCATAAT
MA0014.2 chrX 121268066 121268084 1.34e-05 0.494 CTGAGCAGCAGAGTAGAGC
MA0014.2 chr2 27355520 27355538 1.46e-05 0.517 CAGGGCAGTGGACGATGGC
MA0014.2 chr5 102439933 102439951 1.46e-05 0.517 GAGGGCATCAGAGCAGGGA
MA0014.2 chr1 + 88921607 88921625 1.54e-05 0.523 GCATGCAGGCAGGCATGGC
MA0014.2 chr6 + 31289551 31289569 1.59e-05 0.523 ACCTGCAGCCAAGCAGGGC
MA0014.2 chr16 31576570 31576588 1.62e-05 0.523 AAGGGAAGCCGAGCAGGCC
MA0014.2 chr8 + 25270104 25270122 1.64e-05 0.523 CTGGGCAACAGAGTGGAGC
MA0014.2 chr14 77200328 77200346 1.67e-05 0.523 AAGTGCAGGAATGCATAAC
MA0014.2 chr3 + 94490755 94490773 1.67e-05 0.523 CTGTGCAGCCAGGCCTGCC
MA0014.2 chr5 + 144158572 144158590 1.67e-05 0.523 CCAGCCAGCCAGGCAGAGC
MA0014.2 chr11 67173513 67173531 1.7e-05 0.524 ATATTTAGCCAGCCATGGC
MA0014.2 chr5 + 67692617 67692635 1.74e-05 0.524 CAAAGCAGTCAGGCGTGTT
MA0014.2 chr1 + 94728242 94728260 1.76e-05 0.524 GGAGGCGCCGAGCCGGGGC
MA0014.2 chrX + 33666639 33666657 1.79e-05 0.527 AAGTTCAGCCACCTGTGAC
MA0014.2 chr4 103058737 103058755 1.85e-05 0.535 AAGGCCAGCAGAGTGTAGA
MA0014.2 chr4 + 128788693 128788711 1.93e-05 0.546 GTGCCCAACCAGCCATGGA
MA0014.2 chr8 + 130990392 130990410 1.95e-05 0.546 CAGGTCAACGGGGCTGGAC
MA0014.2 chr14 55780254 55780272 2.03e-05 0.56 GGGCGCAACCAGGCTGGGC
MA0014.2 chrX + 120778048 120778066 2.07e-05 0.563 GTGTTCAACCATCCATGTC
MA0014.2 chrX + 34344348 34344366 2.24e-05 0.602 CTGCTCAGCCAGCCAAGCC
MA0014.2 chr19 + 44118562 44118580 2.36e-05 0.602 GAAAGCAAGCAAGCAAAAC
MA0014.2 chr6 50754868 50754886 2.38e-05 0.602 AAGGCCAGTGATCCAGAGC
MA0014.2 chr13 + 102646969 102646987 2.4e-05 0.602 AGGGCCAGTAGAGTGGAGC
MA0014.2 chr2 27570655 27570673 2.4e-05 0.602 GAGACCACCAGGGCAGAGC
MA0014.2 chr17 26743837 26743855 2.45e-05 0.602 GAGGGCAGGGGACCAGGGA
MA0014.2 chr1 176701968 176701986 2.5e-05 0.602 CAGTCCATCCAGGCAGAAC
MA0014.2 chr16 91618974 91618992 2.53e-05 0.602 GGGTGCAGCGGACCGACAC
MA0014.2 chr10 + 77944858 77944876 2.55e-05 0.602 CTGATCCGCAGACCGTAAC
MA0014.2 chr2 163957514 163957532 2.58e-05 0.602 GAGGTCAACAATGTGTGTC
MA0014.2 chr17 27122768 27122786 2.6e-05 0.602 CCAGGCACCGGTCCAAGAC
MA0014.2 chr15 + 77592490 77592508 2.71e-05 0.602 ATGGGCAGCCCAGTATGAA
MA0014.2 chr1 + 10148444 10148462 2.73e-05 0.602 CAAAGCAGCCATGTGAGAT
MA0014.2 chr12 + 120020841 120020859 2.73e-05 0.602 GAGTGCACCAAAGCTGAAC
MA0014.2 chr6 + 137423516 137423534 2.76e-05 0.602 GGAGGCAGTGATGTGCAAC
MA0014.2 chr7 + 77660662 77660680 2.76e-05 0.602 GCAGGCAGCGGTGCATGGG
MA0014.2 chr14 21012877 21012895 2.79e-05 0.602 CTGTTCATCCATGCAGAAC
MA0014.2 chr8 36152061 36152079 2.79e-05 0.602 AACCTCAGCAGAGTATGAC
MA0014.2 chr10 + 98746879 98746897 2.93e-05 0.616 AGGGTCAACCATCCAGAGC
MA0014.2 chr6 85771827 85771845 2.93e-05 0.616 AAAGGAAGCCGAGCATATC
MA0014.2 chr2 + 154846123 154846141 2.96e-05 0.616 AAGTGCGGCCAACCTGGAC
MA0014.2 chr4 107787251 107787269 2.98e-05 0.616 GTGTGTACCCATGTGTGAA
MA0014.2 chr1 + 141760588 141760606 3.07e-05 0.625 ATAGGCAGCCAGGTGAATC
MA0014.2 chr17 84667932 84667950 3.16e-05 0.625 AAGCTCTCTCAAGCAGGAC
MA0014.2 chr2 71988375 71988393 3.16e-05 0.625 CCATGTGGCCAAGCATGGC
MA0014.2 chr8 121972458 121972476 3.16e-05 0.625 AAGGGAAGCCAAGTGGGGA
MA0014.2 chr18 12861080 12861098 3.26e-05 0.637 CAGGTCAGGCAGGCACAAC
MA0014.2 chr19 + 29192751 29192769 3.35e-05 0.641 CGGGTCTGTGGAGCACGAC
MA0014.2 chr16 81188139 81188157 3.42e-05 0.641 GTGAGCTCCAAAGCGAGAA
MA0014.2 chr18 + 38359718 38359736 3.42e-05 0.641 GAAGGCAGCCAGGTAGAGA
MA0014.2 chrX + 137588668 137588686 3.45e-05 0.641 AGGGGCAGTGGGGCAGAAG
MA0014.2 chr5 + 43275825 43275843 3.48e-05 0.641 CAGAGCATTGGACCATGGA
MA0014.2 chr13 58857633 58857651 3.52e-05 0.641 GAATGCAATAGAGCATGAG
MA0014.2 chr17 + 18460149 18460167 3.52e-05 0.641 ATGGTTACTGGAGCAGGAA
MA0014.2 chr11 + 83377436 83377454 3.65e-05 0.653 GGAGGCAGCCAAGCATTCC
MA0014.2 chr4 138829575 138829593 3.72e-05 0.653 GAGAGCAGTAGGGGAAGAC
MA0014.2 chrX + 121268077 121268095 3.76e-05 0.653 CTGCTCAGTCAAGGAAGGC
MA0014.2 chr5 134903983 134904001 3.79e-05 0.653 CAGGCCCGTGGACTGTGAC
MA0014.2 chr9 115059579 115059597 3.87e-05 0.653 ACATTCACCCAACCGTGCC
MA0014.2 chr6 + 114358535 114358553 3.9e-05 0.653 AGGTGCAGCAGTGCTGGGC
MA0014.2 chr1 188507996 188508014 3.98e-05 0.653 GGAAGCGGCCATCCAGGAA
MA0014.2 chr7 96866623 96866641 3.98e-05 0.653 GACCTCAGCCATGCGAGTC
MA0014.2 chr15 + 37736360 37736378 4.05e-05 0.653 AGAGCCAGCAGGGCATGGG
MA0014.2 chr3 + 127546540 127546558 4.09e-05 0.653 GTGGGTAGCAGGGTGGAGC
MA0014.2 chr9 + 61114987 61115005 4.09e-05 0.653 GAGAGCAGCAGTCCGGGTA
MA0014.2 chr14 + 120234930 120234948 4.17e-05 0.653 GAGAGCTGCAGGGCAAAAC
MA0014.2 chr18 + 56578922 56578940 4.17e-05 0.653 ATGTTCAGTAAAGCAGAGA
MA0014.2 chrX 120325321 120325339 4.21e-05 0.653 CAGACCACCCAAGCTTAAA
MA0014.2 chr13 51324858 51324876 4.25e-05 0.653 ATGGCCACCAAAGCGCGAG
MA0014.2 chr4 + 152267421 152267439 4.29e-05 0.653 AGGCTCACTCAGGGATGAC
MA0014.2 chr17 27773883 27773901 4.33e-05 0.653 AGATGAAGCCAAGCGTGGG
MA0014.2 chr8 88732950 88732968 4.33e-05 0.653 GAGACCACCGAAGCATTGC
MA0014.2 chr15 78378438 78378456 4.49e-05 0.653 AGAGTCAGCCAGGTGAGAG
MA0014.2 chr10 77945001 77945019 4.66e-05 0.653 AGAAGTGGCGAGGCATGAA
MA0014.2 chr13 + 113078353 113078371 4.66e-05 0.653 GAATGCAGTAAGGCACAGC
MA0014.2 chr11 + 116036622 116036640 4.7e-05 0.653 CAGGTCATTCAAGTACGAC
MA0014.2 chr1 + 74997803 74997821 4.75e-05 0.653 GAGAGCAGCGGGCGAGGGC
MA0014.2 chr5 + 135418553 135418571 4.75e-05 0.653 CAGTGTAGCCAGCCCTGGC
MA0014.2 chr4 57828605 57828623 4.79e-05 0.653 TTAAGCACTGAACCATGTC
MA0014.2 chr1 + 184514545 184514563 4.84e-05 0.653 ACAGGCAGCAAGGCAAAAA
MA0014.2 chr11 84496324 84496342 4.84e-05 0.653 GAGGGCACTCAAGTGTGTG
MA0014.2 chr9 + 62870497 62870515 4.84e-05 0.653 ATGCCCAGTGGCCCATGGC
MA0014.2 chr17 29592455 29592473 4.88e-05 0.653 AGAGGTAGCCATCTGGGGC
MA0014.2 chr14 + 65474441 65474459 4.93e-05 0.653 CAGAGCAAGCAAGGATGAC
MA0014.2 chr17 + 31618386 31618404 4.93e-05 0.653 GAGAGAAGCCAGGCAGGAG
MA0014.2 chr7 31502635 31502653 4.93e-05 0.653 AGGCGTGATCAAGTGTGAC
MA0014.2 chr4 152375926 152375944 4.97e-05 0.653 AGATCCACCCGGGTGAGGC
MA0014.2 chr12 + 26485322 26485340 5.02e-05 0.653 GGGAGCACTGAACCCTAGC
MA0014.2 chr13 39540164 39540182 5.02e-05 0.653 AGGATCATCAAGGCAAAAC
MA0014.2 chr17 26770552 26770570 5.02e-05 0.653 AGAGGAAGCCAGGCCTGGC
MA0014.2 chr11 88714686 88714704 5.06e-05 0.653 ATGTGCAGGAGAGCAGGTC
MA0014.2 chr18 75823036 75823054 5.06e-05 0.653 GAGGGCAGCCAGGCTAGGG
MA0014.2 chr11 + 16765705 16765723 5.16e-05 0.653 CTGTGCCATAAAGCGTGAA
MA0014.2 chr11 + 79577470 79577488 5.16e-05 0.653 AAATCCAATAAAGCGAAGC
MA0014.2 chr12 80627081 80627099 5.16e-05 0.653 AAGTCCATTGAAGCATAAA
MA0014.2 chr8 + 47629030 47629048 5.16e-05 0.653 GGGGGCTGGGGGGCGGGGC
MA0014.2 chr9 96742901 96742919 5.35e-05 0.653 GGGGCCAGAGGGGTGTGGC
MA0014.2 chr5 + 87154206 87154224 5.4e-05 0.653 CTAGTCACTGAAGCATAGT
MA0014.2 chr7 + 135153430 135153448 5.4e-05 0.653 CTGCGCACCCGAGCCTGGT
MA0014.2 chr8 10904044 10904062 5.4e-05 0.653 GAGAGAGACCAAGCAGGGC
MA0014.2 chr6 + 47946011 47946029 5.45e-05 0.653 AAGACTAGCAAGGCAGAGC
MA0014.2 chr14 + 79809535 79809553 5.5e-05 0.653 GTATGCAGTCGGGCTGGAA
MA0014.2 chr15 + 82288273 82288291 5.5e-05 0.653 CAGTGCAGCAATGCTTGAT
MA0014.2 chr16 + 11406536 11406554 5.5e-05 0.653 CTGTTCAGAGAAGCAGAAC
MA0014.2 chr1 44891104 44891122 5.6e-05 0.653 GCATGCAGCCAACCAGATC
MA0014.2 chr15 94772744 94772762 5.6e-05 0.653 CTGGCTAACAAAGCGGGAT
MA0014.2 chr6 142515979 142515997 5.6e-05 0.653 GTATGCAATCAGGCGAAGA
MA0014.2 chrX 63286465 63286483 5.6e-05 0.653 CAGGGCTCTAGAGTATGAC
MA0014.2 chr11 21021927 21021945 5.65e-05 0.653 ACAGGCACCCAACCCTAAC
MA0014.2 chr10 92643227 92643245 5.7e-05 0.653 ATGCTAACCAAGGCATGGC
MA0014.2 chr14 87162243 87162261 5.7e-05 0.653 AAGGGCAGTAGAGGATGAT
MA0014.2 chr6 145811899 145811917 5.75e-05 0.653 AGGCGAGGCGGAGCAGGGC
MA0014.2 chrX 51135054 51135072 5.75e-05 0.653 GTGGCCTGCAGGCTGTGAC
MA0014.2 chr14 28142394 28142412 5.8e-05 0.653 GGGTTCAGTGAACTGGGAT
MA0014.2 chr6 37732276 37732294 5.8e-05 0.653 AAGACCAGCAAAGCCAAGC
MA0014.2 chr8 + 35856187 35856205 5.8e-05 0.653 GAGTTCAGCAAAGCAGATA
MA0014.2 chr18 12851842 12851860 5.86e-05 0.653 CAGTCCAACAATGGGTGAC
MA0014.2 chr14 + 66392301 66392319 5.91e-05 0.653 CTGAGCAGCGGGGAGTGAA
MA0014.2 chr7 77125481 77125499 5.91e-05 0.653 AGGATCACTAATGGGTGAC
MA0014.2 chr8 + 130989326 130989344 5.91e-05 0.653 GAAGTCAGGCAGGTGTGAT
MA0014.2 chr11 + 67173855 67173873 5.96e-05 0.653 AGGAGCAGGAAGGCAAAGC
MA0014.2 chr18 76051857 76051875 5.96e-05 0.653 AAGCTCAAGCAGCCGTGAA
MA0014.2 chr19 + 4024784 4024802 6.02e-05 0.653 AAAGTCACCCATGTGTGGT
MA0014.2 chr4 + 107748671 107748689 6.02e-05 0.653 CAGGGCTATGGAGTGAGAC
MA0014.2 chr13 + 113078511 113078529 6.07e-05 0.655 CCCAGCAGCAGTGCATAAC
MA0014.2 chr1 + 185778708 185778726 6.18e-05 0.66 ATAAGCAGTCGAGCAGATA
MA0014.2 chr12 52361149 52361167 6.18e-05 0.66 GAACTCAGCCATGTGGGAG
MA0014.2 chr16 56848340 56848358 6.29e-05 0.663 CAGATCAGAGAAGCGAGTC
MA0014.2 chr4 129807089 129807107 6.29e-05 0.663 GGACTTAGCCAGCCATGCC
MA0014.2 chr6 + 141892795 141892813 6.35e-05 0.663 GAGGTCAGTAATGCATGCT
MA0014.2 chr19 46206413 46206431 6.41e-05 0.663 AAGGGCCCCGGAGCCTGGC
MA0014.2 chr2 + 34382720 34382738 6.41e-05 0.663 CAAGCTAAGCAGGCATGAC
MA0014.2 chr11 16761536 16761554 6.47e-05 0.663 GAAGGCAGGCAAGCCAGAA
MA0014.2 chr15 + 82285804 82285822 6.47e-05 0.663 ATGGGAGGCCATGTGGGAC
MA0014.2 chr4 + 41315343 41315361 6.58e-05 0.665 GGAGTCACTCAGCTGTGTC
MA0014.2 chr5 + 66932734 66932752 6.58e-05 0.665 AAGAGCAGGGGAGGGGGGC
MA0014.2 chr8 10904283 10904301 6.58e-05 0.665 CTCCTCAGCAAAGCATGAG
MA0014.2 chr10 82707244 82707262 6.64e-05 0.667 GGGGGATGCCAGGCGCGAC
MA0014.2 chr16 + 11407716 11407734 6.76e-05 0.672 GTGCTCACGAAGGCGAAAC
MA0014.2 chr16 25945653 25945671 6.76e-05 0.672 CTGCTCGGCAGACTATGGC
MA0014.2 chr10 120927156 120927174 6.88e-05 0.672 TAGTTCAATAAAGCCTGAC
MA0014.2 chr7 56678400 56678418 7e-05 0.672 ATGACCAACAAGGCTTAAC
MA0014.2 chr17 30791267 30791285 7.07e-05 0.672 CTGACCAGCCAGGCGAGCG
MA0014.2 chr4 + 132534744 132534762 7.07e-05 0.672 GAGTGCTGGCGGCCATGAC
MA0014.2 chr13 28208767 28208785 7.13e-05 0.672 ATATGTAGCAGAGGGTGGC
MA0014.2 chr2 + 90343578 90343596 7.13e-05 0.672 CAAATCAGCCAACCTGAGC
MA0014.2 chr19 + 44183594 44183612 7.19e-05 0.672 ATGGCCAATGAGCTGAGGC
MA0014.2 chr5 113558943 113558961 7.19e-05 0.672 TGTCTCAGCCAACCATGGC
MA0014.2 chr8 10904387 10904405 7.19e-05 0.672 CACCTCAGCCAGGTGTGTC
MA0014.2 chr9 74882557 74882575 7.19e-05 0.672 GAGAGAAGCAGAGCAGGAG
MA0014.2 chr10 + 82787877 82787895 7.25e-05 0.672 ATGTGCATCGATGTGAAAC
MA0014.2 chrX 34344434 34344452 7.25e-05 0.672 TTGGGCAATCAGGCAAGAG
MA0014.2 chr16 97503027 97503045 7.38e-05 0.672 GAGAGCAGCCTGGCATGTC
MA0014.2 chr8 + 46321852 46321870 7.38e-05 0.672 CAGGGCACCACAGCATGCC
MA0014.2 chr14 + 12401403 12401421 7.45e-05 0.672 CCAGGAAGCAAAGCAAAAC
MA0014.2 chr18 + 39853229 39853247 7.45e-05 0.672 CAGAGCAGGGGAGGGAGGC
MA0014.2 chr7 30076852 30076870 7.45e-05 0.672 CAGGTCAGCGGGGAAGGAC
MA0014.2 chr1 74997783 74997801 7.51e-05 0.672 CGGGCTACCCGGCCATGTC
MA0014.2 chr15 37736038 37736056 7.51e-05 0.672 CAAGGCTCTCAAGTGTGAA
MA0014.2 chr3 + 94485089 94485107 7.51e-05 0.672 GTAAGCAGAGGGCCGGGGC
MA0014.2 chr9 53103710 53103728 7.51e-05 0.672 AAGTGTGGTGGAGCATGCC
MA0014.2 chr6 54710715 54710733 7.58e-05 0.675 GGAGGCAGCGAAGAGGAGC
MA0014.2 chr7 148036787 148036805 7.65e-05 0.677 GTGCTCTGTGGTGCAGGGC
MA0014.2 chr18 12866895 12866913 7.78e-05 0.682 AAAGTTAACCAACCATAAA
MA0014.2 chr13 54765901 54765919 7.85e-05 0.682 AGATGCAGCAGAGTGGGGT
MA0014.2 chr13 + 104379780 104379798 7.92e-05 0.682 AAAGTTAGACAAGCAAGAC
MA0014.2 chr18 12853305 12853323 7.92e-05 0.682 ACAGGCACTGAGGCGTGCA
MA0014.2 chr18 12854517 12854535 7.92e-05 0.682 CAGGCCGGCCAGCCCAGAC
MA0014.2 chrX + 137588632 137588650 7.92e-05 0.682 AGACCCAGCGGGGCAGAGA
MA0014.2 chr7 36352612 36352630 7.99e-05 0.683 CAGTGCACCAGTGTATGGA
MA0014.2 chr10 28764605 28764623 8.06e-05 0.683 ATAAGCAGAGGACCATGAA
MA0014.2 chr10 28778661 28778679 8.06e-05 0.683 ATAAGCAGAGGACCATGAA
MA0014.2 chr12 111133945 111133963 8.13e-05 0.683 CAGTGTGATCAAGCGGGAA
MA0014.2 chr8 126221302 126221320 8.27e-05 0.683 GAGTGCGAGCAACTGTGAC
MA0014.2 chr10 111035423 111035441 8.34e-05 0.683 CTGGGTGACAAGGCATGAA
MA0014.2 chr15 + 82280838 82280856 8.42e-05 0.683 CAGTGCAGCAATGCTTGAG
MA0014.2 chr17 + 83648081 83648099 8.42e-05 0.683 GGAGGCAGGGAAGTAGGGA
MA0014.2 chr4 87830210 87830228 8.42e-05 0.683 AAGGTCAATGAACTGGGTC
MA0014.2 chr4 134456017 134456035 8.42e-05 0.683 GTGAGCTCCCAGGCCTGGC
MA0014.2 chr2 116844275 116844293 8.49e-05 0.683 GTGGGAAGCCAGCGGAGAC
MA0014.2 chr11 88714318 88714336 8.56e-05 0.683 GTGGGCAGCAGAGCAGCTC
MA0014.2 chr14 31489299 31489317 8.64e-05 0.683 CAGGGCACCAAACAGTGGC
MA0014.2 chr18 12848305 12848323 8.64e-05 0.683 GAAGTCGATCGACCATGGA
MA0014.2 chr4 134455728 134455746 8.71e-05 0.683 ACAGGAACTCAAGCAGGGC
MA0014.2 chr8 10882290 10882308 8.71e-05 0.683 AGAAGCAGTGAGCCAGGGT
MA0014.2 chr10 + 77944782 77944800 8.79e-05 0.683 ACCCCTAGCGGAGCGGGAC
MA0014.2 chr12 + 105133487 105133505 8.79e-05 0.683 GGACTCACCCAGGGAAGAC
MA0014.2 chr3 + 52341199 52341217 8.79e-05 0.683 ATGTCCAGTGATGCAAATC
MA0014.2 chr4 + 35252682 35252700 8.87e-05 0.683 AGAACCAGTGAGCTGTGTC
MA0014.2 chr13 24455298 24455316 8.94e-05 0.683 CTGAGCAGTGACGTAGAAC
MA0014.2 chr8 121937967 121937985 8.94e-05 0.683 GAGGCCAGTGAGCTCTGGC
MA0014.2 chr16 16911552 16911570 9.02e-05 0.683 CAAGGCAGGGGACCTAGAC
MA0014.2 chr3 21772175 21772193 9.02e-05 0.683 GGATGCAGCAAAGGGAGTC
MA0014.2 chr7 29029531 29029549 9.02e-05 0.683 GGCATCAGTCAACCAGGTC
MA0014.2 chr4 107713502 107713520 9.1e-05 0.683 GAAATCATTGGACCAAAAC
MA0014.2 chr12 + 26066735 26066753 9.17e-05 0.683 AAAGCCACCAGAGTGCAAC
MA0014.2 chr11 + 16733481 16733499 9.25e-05 0.683 AGCTGCAGCCAGGCGGGTA
MA0014.2 chr2 + 165229846 165229864 9.25e-05 0.683 AGAAGCAGCAGTGTGAGCC
MA0014.2 chr5 + 96438234 96438252 9.25e-05 0.683 TTGGCCACCAGGGCCTGGC
MA0014.2 chr11 106351751 106351769 9.33e-05 0.683 ATGGTCACTCAGCCATAAG
MA0014.2 chr1 + 184493473 184493491 9.41e-05 0.683 CAAAGCCCTGAAGTGGGAC
MA0014.2 chr19 + 18441509 18441527 9.41e-05 0.683 CAAAGCACTGGACTAGAAC
MA0014.2 chr9 80104981 80104999 9.41e-05 0.683 CAGGGCAGTAATGAGAGAC
MA0014.2 chr6 + 50716727 50716745 9.49e-05 0.683 AAATGCAGCGGCGTGTGGA
MA0014.2 chr11 78317209 78317227 9.58e-05 0.683 ATGGGAATCAAACCAAGAC
MA0014.2 chr2 + 134802617 134802635 9.58e-05 0.683 CCCCCCAGTGAAGTGTGGC
MA0014.2 chr11 + 59945593 59945611 9.66e-05 0.683 CTGGGCAGGAAACTAGAAC
MA0014.2 chr13 + 74156525 74156543 9.66e-05 0.683 GGGGCCACCCAGGCAGGCT
MA0014.2 chr17 + 65116475 65116493 9.66e-05 0.683 CAAGGCAGAAGGGCAAGGC
MA0014.2 chr2 27404505 27404523 9.66e-05 0.683 AAAGTTAGCAGACTGAGGC
MA0014.2 chr4 104442979 104442997 9.66e-05 0.683 GTGGTTACTGAGGCAGGAT
MA0014.2 chr6 + 47945617 47945635 9.66e-05 0.683 TTGCCCACCAGGGTATGGC
MA0014.2 chr8 126499931 126499949 9.66e-05 0.683 AAAGCCAACCAGCCATGTA
MA0014.2 chr1 165747706 165747724 9.74e-05 0.683 ATGTGCTACCAAGCCTGGC
MA0014.2 chr1 + 180714960 180714978 9.74e-05 0.683 GAGGGTACCCAAGGCTGAC
MA0014.2 chr13 52286606 52286624 9.74e-05 0.683 GAGAGTAGTAGGCCAGAGC
MA0014.2 chr18 12885353 12885371 9.74e-05 0.683 GTGCTCAGTGGTCCCTGAA
MA0014.2 chr3 + 88913869 88913887 9.74e-05 0.683 AGGGTCACAGGAGCAGAAC
MA0014.2 chr11 + 113480687 113480705 9.82e-05 0.683 TGGAGCACCAGTCCGCGGC
MA0014.2 chr15 82274444 82274462 9.82e-05 0.683 ATGGGCAGTGAGGCCAGAG
MA0014.2 chrX + 34344352 34344370 9.82e-05 0.683 TCAGCCAGCCAAGCCAGGC
MA0014.2 chr14 + 48750946 48750964 9.91e-05 0.685 CGGGTTAGTAAGGCGAGAG
MA0014.2 chr19 + 12795173 12795191 9.99e-05 0.685 AAAGGCAACGGGGTGGGAG
MA0014.2 chr6 94668369 94668387 9.99e-05 0.685 AGAGGCAGGCAGGCCTAGC
MA0014.2 chr8 + 67264430 67264448 9.99e-05 0.685 AGGTTCATCCATGCTGGAC

DEBUGGING INFORMATION

Command line:

/share/pkg/meme/4.10.0_4/install/bin/fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_17 --bgfile Static_Male-biased_Output/background --motif MA0014.2 ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/Static_Male-biased.fa

Settings:

output directory = Static_Male-biased_Output/fimo_out_17 MEME file name = ./JASPAR_CORE_2014_vertebrates.meme sequence file name = Static_Male-biased_Output/Static_Male-biased.fa
background file name = Static_Male-biased_Output/background allow clobber = true compute q-values = true
parse genomic coord. = true text only = false scan both strands = true
max sequence length = 250000000 output threshold = 0.0001 threshold type = p-value
max stored scores = 100000 pseudocount = 0.1 verbosity = 1
selected motif = MA0014.2

This information can be useful in the event you wish to report a problem with the FIMO software.


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