******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= Static_Male-biased_Output/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:153567364-153567464 1.0000 100 chr18:12945500-12945600 1.0000 100 chr7:71304532-71304632 1.0000 100 chr16:11404042-11404142 1.0000 100 chr2:156311895-156311995 1.0000 100 chr1:31048723-31048823 1.0000 100 chr12:101630644-10163074 1.0000 100 chrX:121299580-121299680 1.0000 100 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chr7:56138931-56139031 1.0000 100 chr3:129834451-129834551 1.0000 100 chr11:6483932-6484032 1.0000 100 chrX:121312670-121312770 1.0000 100 chr6:143433448-143433548 1.0000 100 chr2:154845936-154846036 1.0000 100 chr15:7197272-7197372 1.0000 100 chr13:113078167-11307826 1.0000 100 chr17:31741565-31741665 1.0000 100 chr3:96451156-96451256 1.0000 100 chr8:48003569-48003669 1.0000 100 chr16:24240549-24240649 1.0000 100 chr16:35743100-35743200 1.0000 100 chr19:31965339-31965439 1.0000 100 chr7:20537849-20537949 1.0000 100 chr13:7347623-7347723 1.0000 100 chr19:55624514-55624614 1.0000 100 chr14:77231645-77231745 1.0000 100 chr12:43536474-43536574 1.0000 100 chr16:95361558-95361658 1.0000 100 chr9:74551673-74551773 1.0000 100 chr1:61696418-61696518 1.0000 100 chr19:23136374-23136474 1.0000 100 chr15:82287916-82288016 1.0000 100 chr3:127546442-127546542 1.0000 100 chr13:37736637-37736737 1.0000 100 chr1:189328384-189328484 1.0000 100 chr16:15550559-15550659 1.0000 100 chr4:32874064-32874164 1.0000 100 chr8:116617076-116617176 1.0000 100 chr5:96733096-96733196 1.0000 100 chr15:40609804-40609904 1.0000 100 chr18:30415453-30415553 1.0000 100 chr11:44738268-44738368 1.0000 100 chr7:79360531-79360631 1.0000 100 chr11:117512289-11751238 1.0000 100 chr16:13610926-13611026 1.0000 100 chr4:149726100-149726200 1.0000 100 chr8:42129374-42129474 1.0000 100 chr8:107578540-107578640 1.0000 100 chr9:31779662-31779762 1.0000 100 chr8:118888602-118888702 1.0000 100 chr18:38359594-38359694 1.0000 100 chr5:4089521-4089621 1.0000 100 chr11:27874462-27874562 1.0000 100 chr2:141020307-141020407 1.0000 100 chr14:79809131-79809231 1.0000 100 chr13:54531394-54531494 1.0000 100 chr7:79433127-79433227 1.0000 100 chr6:143100844-143100944 1.0000 100 chr4:107771585-107771685 1.0000 100 chr4:62762997-62763097 1.0000 100 chr2:22937327-22937427 1.0000 100 chr18:54294672-54294772 1.0000 100 chr7:125700591-125700691 1.0000 100 chr3:54564670-54564770 1.0000 100 chr7:150969878-150969978 1.0000 100 chr18:12845181-12845281 1.0000 100 chr1:88921493-88921593 1.0000 100 chr13:102738053-10273815 1.0000 100 chr18:64767644-64767744 1.0000 100 chr9:110219476-110219576 1.0000 100 chr15:88777145-88777245 1.0000 100 chr6:125268915-125269015 1.0000 100 chr3:94500219-94500319 1.0000 100 chr6:99103577-99103677 1.0000 100 chr3:94482867-94482967 1.0000 100 chr18:12708879-12708979 1.0000 100 chr6:99324901-99325001 1.0000 100 chr11:111103906-11110400 1.0000 100 chr3:94510911-94511011 1.0000 100 chr7:36352346-36352446 1.0000 100 chr15:9206446-9206546 1.0000 100 chr15:38352464-38352564 1.0000 100 chr18:13548228-13548328 1.0000 100 chr13:99365233-99365333 1.0000 100 chr2:102884366-102884466 1.0000 100 chr15:25428930-25429030 1.0000 100 chr4:55416440-55416540 1.0000 100 chr12:16591684-16591784 1.0000 100 chr13:57468315-57468415 1.0000 100 chr12:40753549-40753649 1.0000 100 chr8:91930525-91930625 1.0000 100 chr7:15031815-15031915 1.0000 100 chr3:130982168-130982268 1.0000 100 chr18:12854961-12855061 1.0000 100 chr6:145811855-145811955 1.0000 100 chr11:16753549-16753649 1.0000 100 chr10:126841766-12684186 1.0000 100 chr7:74494730-74494830 1.0000 100 chr13:75051549-75051649 1.0000 100 chr18:5685970-5686070 1.0000 100 chr15:64193236-64193336 1.0000 100 chr13:16794406-16794506 1.0000 100 chr2:109523968-109524068 1.0000 100 chr6:84448999-84449099 1.0000 100 chr8:114245020-114245120 1.0000 100 chr6:136035595-136035695 1.0000 100 chr9:115059502-115059602 1.0000 100 chr18:3420673-3420773 1.0000 100 chrX:137586915-137587015 1.0000 100 chr1:176861246-176861346 1.0000 100 chr4:103058258-103058358 1.0000 100 chr9:66448685-66448785 1.0000 100 chr6:134467189-134467289 1.0000 100 chr14:120664863-12066496 1.0000 100 chr3:85073047-85073147 1.0000 100 chrX:35753861-35753961 1.0000 100 chr1:44890970-44891070 1.0000 100 chr18:55342363-55342463 1.0000 100 chr1:58134943-58135043 1.0000 100 chr13:112695473-11269557 1.0000 100 chr6:94877640-94877740 1.0000 100 chr14:80879678-80879778 1.0000 100 chr15:53374407-53374507 1.0000 100 chr4:103056000-103056100 1.0000 100 chr2:63699859-63699959 1.0000 100 chr11:20759751-20759851 1.0000 100 chr18:64768112-64768212 1.0000 100 chr17:24402081-24402181 1.0000 100 chr13:42688919-42689019 1.0000 100 chr15:82285436-82285536 1.0000 100 chr18:74517915-74518015 1.0000 100 chr7:106180564-106180664 1.0000 100 chr4:139431779-139431879 1.0000 100 chr18:12853110-12853210 1.0000 100 chr7:116167081-116167181 1.0000 100 chr18:9489350-9489450 1.0000 100 chr11:97304521-97304621 1.0000 100 chr7:29028400-29028500 1.0000 100 chr13:63646097-63646197 1.0000 100 chr1:145405398-145405498 1.0000 100 chr8:29377692-29377792 1.0000 100 chr2:116844136-116844236 1.0000 100 chr8:37343557-37343657 1.0000 100 chr3:43858628-43858728 1.0000 100 chr10:120947096-12094719 1.0000 100 chr10:69403874-69403974 1.0000 100 chr10:96463448-96463548 1.0000 100 chr10:92539154-92539254 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme Static_Male-biased_Output/seqs-sampled -oc Static_Male-biased_Output/meme_out -dna -mod anr -nmotifs 3 -minw 6 -maxw 30 -bfile Static_Male-biased_Output/background -revcomp -nostatus model: mod= anr nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 strands: + - sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.271 C 0.229 G 0.229 T 0.271 Background letter frequencies (from Static_Male-biased_Output/background): A 0.274 C 0.227 G 0.227 T 0.274 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 46 llr = 581 E-value = 1.0e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 87676668964aa768777a8 pos.-specific C :::1:22::12:::2:113:1 probability G 1:211:111:2::1:12:::1 matrix T :3213211:32::212:2::: bits 2.1 1.9 ** * 1.7 ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * ** ** (18.2 bits) 0.9 ** ** ** * *** 0.6 ** ** ** *** ****** 0.4 ********** ********** 0.2 ********** ********** 0.0 --------------------- Multilevel AAAAAAAAAAAAAAAAAAAAA consensus TG T C T TC GTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr6:134467189-134467289 + 80 1.56e-12 GGCAAAGGCA AAAAAAAAAAAAAAAAAAAAA chr7:59123298-59123398 - 64 1.56e-12 GCTCACAGAA AAAAAAAAAAAAAAAAAAAAA AGGTATTCAG chr14:11991795-11991895 + 16 1.56e-12 TGGAGGAACA AAAAAAAAAAAAAAAAAAAAA AAAGGATTGG chr8:116662434-116662534 + 67 6.82e-11 AAGCTTTTTT AAAAAAAAACAAAAAAAAAAA CTAATGTGTT chr6:141940995-141941095 - 5 3.60e-10 CACAAGTCCA AAAAAACAAATAAACAAAAAA AGGA chr18:30415453-30415553 - 31 3.04e-09 ACAAACAAAC AAGGAAAAATGAAAAAAAAAA CTTGGCATGG chr4:103054682-103054782 - 67 1.05e-08 GTCAATAGTC AAAAATCAGAAAAAAAAAAAA TGAATGCTGG chr18:30415453-30415553 - 58 1.21e-08 TCCCCCCCAA AAAGAACAAACAAACAAACAA ACAAACAAGG chr13:43992252-43992352 + 20 3.63e-08 ACACTAAATG GAAAAAAAAAAAAAAGGAAAA GTACCACAGA chr15:8273986-8274086 + 36 4.70e-08 AAGTAACCAG AAGAAAAAAATAATCAATCAA TTTACCTGTG chr9:104069173-104069273 + 43 6.86e-08 CAAAGCTCCT ATGAAAGAAAGAAAAAAAAAG ATCAATGCTC chr7:126775101-126775201 - 68 6.86e-08 TACCACAGGT ATACAAAAAACAAACAAAAAC TAGAGAGATG chr6:94877640-94877740 - 49 8.73e-08 TTCCCTGTGG AATAAACAAAAAAGAGAAAAA ACGTTAGGAC chr6:139798357-139798457 - 39 1.11e-07 CTCAGATATA AAAATAGAAGGAAAAAAAAAA CCTGTCAGTA chr1:74770362-74770462 + 74 1.56e-07 CTTCCAATGG ATTATTAAAACAAACAAACAA TCCGCC chr16:13610926-13611026 + 72 1.75e-07 CAGCATTTCA AAGAAAAAGATAAGAAGAAAA AGAAACAG chr13:37736637-37736737 + 56 2.43e-07 TTATGAATCC ATAATAAAATCAATCAAAAAG CCAGCAGTGT chr5:123148467-123148567 + 62 2.71e-07 TCTTCAGACC GAAAGCAAACAAAAAAGAAAA AACAGATTTT chr16:15550559-15550659 - 72 4.12e-07 TCTTGGCA AAGCAAGAAACAAGCAAAAAA ACCCCACTTC chr3:18195834-18195934 - 12 4.12e-07 TAGAAAAGTT AATGTTAAATCAAAAAATAAA TACTTTTTCC chr13:75035198-75035298 - 74 4.56e-07 AAACAC CAATGCAAAAAAAAAAAAAAA TCATGACACA chr4:60083084-60083184 - 3 7.47e-07 CCCATACGGG AAGAGGGAAAAAAAAAAAAAC CC chr2:22937327-22937427 - 36 9.04e-07 TAATTTAATA AAGAACACAAAAAACTATAAA TTCTATATTT chr15:64027128-64027228 - 8 1.09e-06 GTGCATATAA ATAAAAATATAAATTTAAAAA AATAGTA chr7:25629232-25629332 + 27 1.19e-06 CAATAAAAAT AAATAAATAATAAATAATAAA AGGTTAATTT chr4:114950739-114950839 - 68 1.31e-06 GGGGGCACCT ATAATAAAACAAAACTGAAAG AAAGCATGCA chr1:88921493-88921593 + 20 1.43e-06 GACAGAGACA GAGAGACAGAGAAAAAGAAAA ACAGAGAGAG chr1:102393275-102393375 - 14 1.56e-06 CAGCTATGTC ATTATCCAAATAAAAGGAAAA AGGAAGACCT chr10:126841766-12684186 - 63 1.70e-06 CACACAGAAG ATAAATAAATGAATGAATCAA TCAATCAATA chr6:115368945-115369045 - 34 1.70e-06 TTATGGACTT TAAAACCAATCAATAAACAAA AGTCATAGTT chr7:104108942-104109042 - 70 2.02e-06 TAACACAGCA AATAAAAAACGAAAGTCAAAA AAGCCCAAAT chr12:80626793-80626893 - 31 2.20e-06 TAATTTCCAG ATAGGAAAATGAAAATCTAAA GTCAACAACC chr3:98490224-98490324 + 48 2.39e-06 ATTGATGTTG AAGGTCAAAACAAATAAACAC TTTCCTCCCC chr12:105131419-10513151 - 10 3.60e-06 CTCTCAGATC AAGAATAGACAAATAAACCAA GCCTAAGTC chr13:102738053-10273815 - 63 4.20e-06 GGTCACAGTC ATCAAACAGACAAACAAACAC CAAAACAAAG chr7:125700591-125700691 + 43 4.20e-06 TTCTGTTTAA AAATAAACAAAAAGATGACAA AGTCCTCGAT chr4:96668024-96668124 - 69 4.54e-06 AGTAAATATT ATACAACTATTAAAAAGCAAA CCTGTATTTA chr16:11406421-11406521 - 40 4.90e-06 CCCCACCCCC AAAAATTAATTAATTACACAA AACCAGTTCT chr8:46409614-46409714 - 48 4.90e-06 GTGTAAAGGA ATAGTAAGATGAAAAACAAAC AAATCTTTAC chr9:104069173-104069273 + 15 5.69e-06 AATTGCAGAA CATATCCAATAAATAAATCAA AGCTCCTATG chr7:56138931-56139031 + 43 6.13e-06 ATAAATAAGT ATTATGAAAAAAAGATATCAA AGGTAGGGGG chr3:85073047-85073147 - 22 9.37e-06 TTTTTTAACC ATTAGATAAATAAACACCCAA GTTAGGCATG chr4:139431779-139431879 - 6 1.00e-05 TAAACACTCA GTAAATTAATGAATAAGTCAA CTAAT chr19:42528405-42528505 + 42 1.39e-05 GCTTGTGGCC GACTTACAAATAATAAACAAA TAGGTCATTT chr19:40463451-40463551 + 10 2.41e-05 AAGTGCAGG AAACACGGATAAAATAATAAG GTTCCTCCCA chr6:85869359-85869459 + 79 4.15e-05 AAAATTCTGT TTAATATAATAAATATGTAAC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:134467189-134467289 1.6e-12 79_[+1] chr7:59123298-59123398 1.6e-12 63_[-1]_16 chr14:11991795-11991895 1.6e-12 15_[+1]_64 chr8:116662434-116662534 6.8e-11 66_[+1]_13 chr6:141940995-141941095 3.6e-10 4_[-1]_75 chr18:30415453-30415553 1.2e-08 30_[-1]_6_[-1]_22 chr4:103054682-103054782 1.1e-08 66_[-1]_13 chr13:43992252-43992352 3.6e-08 19_[+1]_60 chr15:8273986-8274086 4.7e-08 35_[+1]_44 chr9:104069173-104069273 5.7e-06 14_[+1]_7_[+1]_37 chr7:126775101-126775201 6.9e-08 67_[-1]_12 chr6:94877640-94877740 8.7e-08 48_[-1]_31 chr6:139798357-139798457 1.1e-07 38_[-1]_41 chr1:74770362-74770462 1.6e-07 73_[+1]_6 chr16:13610926-13611026 1.7e-07 71_[+1]_8 chr13:37736637-37736737 2.4e-07 55_[+1]_24 chr5:123148467-123148567 2.7e-07 61_[+1]_18 chr16:15550559-15550659 4.1e-07 71_[-1]_8 chr3:18195834-18195934 4.1e-07 11_[-1]_68 chr13:75035198-75035298 4.6e-07 73_[-1]_6 chr4:60083084-60083184 7.5e-07 2_[-1]_77 chr2:22937327-22937427 9e-07 35_[-1]_44 chr15:64027128-64027228 1.1e-06 7_[-1]_72 chr7:25629232-25629332 1.2e-06 26_[+1]_53 chr4:114950739-114950839 1.3e-06 67_[-1]_12 chr1:88921493-88921593 1.4e-06 19_[+1]_60 chr1:102393275-102393375 1.6e-06 13_[-1]_66 chr10:126841766-12684186 1.7e-06 62_[-1]_17 chr6:115368945-115369045 1.7e-06 33_[-1]_46 chr7:104108942-104109042 2e-06 69_[-1]_10 chr12:80626793-80626893 2.2e-06 30_[-1]_49 chr3:98490224-98490324 2.4e-06 47_[+1]_32 chr12:105131419-10513151 3.6e-06 9_[-1]_70 chr13:102738053-10273815 4.2e-06 62_[-1]_17 chr7:125700591-125700691 4.2e-06 42_[+1]_37 chr4:96668024-96668124 4.5e-06 68_[-1]_11 chr16:11406421-11406521 4.9e-06 39_[-1]_40 chr8:46409614-46409714 4.9e-06 47_[-1]_32 chr7:56138931-56139031 6.1e-06 42_[+1]_37 chr3:85073047-85073147 9.4e-06 21_[-1]_58 chr4:139431779-139431879 1e-05 5_[-1]_74 chr19:42528405-42528505 1.4e-05 41_[+1]_38 chr19:40463451-40463551 2.4e-05 9_[+1]_70 chr6:85869359-85869459 4.2e-05 78_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=46 chr6:134467189-134467289 ( 80) AAAAAAAAAAAAAAAAAAAAA 1 chr7:59123298-59123398 ( 64) AAAAAAAAAAAAAAAAAAAAA 1 chr14:11991795-11991895 ( 16) AAAAAAAAAAAAAAAAAAAAA 1 chr8:116662434-116662534 ( 67) AAAAAAAAACAAAAAAAAAAA 1 chr6:141940995-141941095 ( 5) AAAAAACAAATAAACAAAAAA 1 chr18:30415453-30415553 ( 31) AAGGAAAAATGAAAAAAAAAA 1 chr4:103054682-103054782 ( 67) AAAAATCAGAAAAAAAAAAAA 1 chr18:30415453-30415553 ( 58) AAAGAACAAACAAACAAACAA 1 chr13:43992252-43992352 ( 20) GAAAAAAAAAAAAAAGGAAAA 1 chr15:8273986-8274086 ( 36) AAGAAAAAAATAATCAATCAA 1 chr9:104069173-104069273 ( 43) ATGAAAGAAAGAAAAAAAAAG 1 chr7:126775101-126775201 ( 68) ATACAAAAAACAAACAAAAAC 1 chr6:94877640-94877740 ( 49) AATAAACAAAAAAGAGAAAAA 1 chr6:139798357-139798457 ( 39) AAAATAGAAGGAAAAAAAAAA 1 chr1:74770362-74770462 ( 74) ATTATTAAAACAAACAAACAA 1 chr16:13610926-13611026 ( 72) AAGAAAAAGATAAGAAGAAAA 1 chr13:37736637-37736737 ( 56) ATAATAAAATCAATCAAAAAG 1 chr5:123148467-123148567 ( 62) GAAAGCAAACAAAAAAGAAAA 1 chr16:15550559-15550659 ( 72) AAGCAAGAAACAAGCAAAAAA 1 chr3:18195834-18195934 ( 12) AATGTTAAATCAAAAAATAAA 1 chr13:75035198-75035298 ( 74) CAATGCAAAAAAAAAAAAAAA 1 chr4:60083084-60083184 ( 3) AAGAGGGAAAAAAAAAAAAAC 1 chr2:22937327-22937427 ( 36) AAGAACACAAAAAACTATAAA 1 chr15:64027128-64027228 ( 8) ATAAAAATATAAATTTAAAAA 1 chr7:25629232-25629332 ( 27) AAATAAATAATAAATAATAAA 1 chr4:114950739-114950839 ( 68) ATAATAAAACAAAACTGAAAG 1 chr1:88921493-88921593 ( 20) GAGAGACAGAGAAAAAGAAAA 1 chr1:102393275-102393375 ( 14) ATTATCCAAATAAAAGGAAAA 1 chr10:126841766-12684186 ( 63) ATAAATAAATGAATGAATCAA 1 chr6:115368945-115369045 ( 34) TAAAACCAATCAATAAACAAA 1 chr7:104108942-104109042 ( 70) AATAAAAAACGAAAGTCAAAA 1 chr12:80626793-80626893 ( 31) ATAGGAAAATGAAAATCTAAA 1 chr3:98490224-98490324 ( 48) AAGGTCAAAACAAATAAACAC 1 chr12:105131419-10513151 ( 10) AAGAATAGACAAATAAACCAA 1 chr13:102738053-10273815 ( 63) ATCAAACAGACAAACAAACAC 1 chr7:125700591-125700691 ( 43) AAATAAACAAAAAGATGACAA 1 chr4:96668024-96668124 ( 69) ATACAACTATTAAAAAGCAAA 1 chr16:11406421-11406521 ( 40) AAAAATTAATTAATTACACAA 1 chr8:46409614-46409714 ( 48) ATAGTAAGATGAAAAACAAAC 1 chr9:104069173-104069273 ( 15) CATATCCAATAAATAAATCAA 1 chr7:56138931-56139031 ( 43) ATTATGAAAAAAAGATATCAA 1 chr3:85073047-85073147 ( 22) ATTAGATAAATAAACACCCAA 1 chr4:139431779-139431879 ( 6) GTAAATTAATGAATAAGTCAA 1 chr19:42528405-42528505 ( 42) GACTTACAAATAATAAACAAA 1 chr19:40463451-40463551 ( 10) AAACACGGATAAAATAATAAG 1 chr6:85869359-85869459 ( 79) TTAATATAATAAATATGTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.5868 E= 1.0e-029 156 -238 -106 -265 125 -1217 -1217 35 105 -238 -6 -65 135 -138 -80 -165 115 -1217 -80 -7 120 -38 -238 -85 105 8 -106 -165 159 -238 -180 -207 174 -1217 -138 -1217 105 -106 -338 15 59 -21 -21 -48 187 -1217 -1217 -1217 187 -1217 -1217 -1217 125 -1217 -106 -19 115 8 -238 -133 148 -1217 -180 -65 130 -106 -6 -1217 125 -106 -1217 -19 139 32 -1217 -1217 187 -1217 -1217 -1217 152 -80 -138 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 46 E= 1.0e-029 0.804348 0.043478 0.108696 0.043478 0.652174 0.000000 0.000000 0.347826 0.565217 0.043478 0.217391 0.173913 0.695652 0.086957 0.130435 0.086957 0.608696 0.000000 0.130435 0.260870 0.630435 0.173913 0.043478 0.152174 0.565217 0.239130 0.108696 0.086957 0.826087 0.043478 0.065217 0.065217 0.913043 0.000000 0.086957 0.000000 0.565217 0.108696 0.021739 0.304348 0.413043 0.195652 0.195652 0.195652 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.652174 0.000000 0.108696 0.239130 0.608696 0.239130 0.043478 0.108696 0.760870 0.000000 0.065217 0.173913 0.673913 0.108696 0.217391 0.000000 0.652174 0.108696 0.000000 0.239130 0.717391 0.282609 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.782609 0.130435 0.086957 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- A[AT][AG]A[AT]A[AC]AA[AT]AAA[AT][AC]A[AG][AT][AC]AA -------------------------------------------------------------------------------- Time 48.03 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 29 sites = 6 llr = 183 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 8:8:a2a25:7:7:8:a:82728:a:a:7 pos.-specific C 2a:a:7:8:a:5:a:8:a:8:8:a:8:a: probability G ::2:::::3:3:2:2:::::3:2:::::3 matrix T :::::2::2::52::2::2::::::2::: bits 2.1 * * * * * * * 1.9 * ** * * * ** ** ** 1.7 * ** * * * ** ** ** 1.5 * ** ** * * *** * * ***** Relative 1.3 ***** ** * ******* ******* Entropy 1.1 ***** ** *** **************** (44.0 bits) 0.9 ******** *** **************** 0.6 ******** ******************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel ACACACACACACACACACACACACACACA consensus G GT G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr9:105657020-105657120 - 19 7.39e-18 TCTCACTCAC ACACACACACATACACACACACACACACA GAGAGAGAGA chr10:117173922-11717402 - 14 2.18e-17 CACACACACA ACACACACACACACACACACACACACACG ACCACATAAA chr4:104761992-104762092 + 62 2.95e-15 AAGGTTATTC ACACACACGCGTGCGCACACACACACACA ATATCACTGT chr3:75706660-75706760 - 2 1.56e-14 ACACACAAGT ACACATACTCGCACACACAAACACACACA C chr1:184693768-184693868 - 21 1.14e-13 GGCGGCACAC ACGCACACGCATTCACACACGCGCATACG CGTATGCACG chr3:75706660-75706760 - 34 6.18e-13 CTTGAGCAAC CCACAAAAACACACATACTCGAACACACA AGTACACATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:105657020-105657120 7.4e-18 18_[-2]_53 chr10:117173922-11717402 2.2e-17 13_[-2]_58 chr4:104761992-104762092 2.9e-15 61_[+2]_10 chr3:75706660-75706760 1.6e-14 1_[-2]_3_[-2]_38 chr1:184693768-184693868 1.1e-13 20_[-2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=29 seqs=6 chr9:105657020-105657120 ( 19) ACACACACACATACACACACACACACACA 1 chr10:117173922-11717402 ( 14) ACACACACACACACACACACACACACACG 1 chr4:104761992-104762092 ( 62) ACACACACGCGTGCGCACACACACACACA 1 chr3:75706660-75706760 ( 2) ACACATACTCGCACACACAAACACACACA 1 chr1:184693768-184693868 ( 21) ACGCACACGCATTCACACACGCGCATACG 1 chr3:75706660-75706760 ( 34) CCACAAAAACACACATACTCGAACACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.2611 E= 1.3e-008 161 -44 -923 -923 -923 214 -923 -923 161 -923 -44 -923 -923 214 -923 -923 187 -923 -923 -923 -71 156 -923 -71 187 -923 -923 -923 -71 188 -923 -923 87 -923 56 -71 -923 214 -923 -923 128 -923 56 -923 -923 114 -923 87 128 -923 -44 -71 -923 214 -923 -923 161 -923 -44 -923 -923 188 -923 -71 187 -923 -923 -923 -923 214 -923 -923 161 -923 -923 -71 -71 188 -923 -923 128 -923 56 -923 -71 188 -923 -923 161 -923 -44 -923 -923 214 -923 -923 187 -923 -923 -923 -923 188 -923 -71 187 -923 -923 -923 -923 214 -923 -923 128 -923 56 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 6 E= 1.3e-008 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.666667 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.500000 0.000000 0.333333 0.166667 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.500000 0.000000 0.500000 0.666667 0.000000 0.166667 0.166667 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.166667 0.833333 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- ACACACAC[AG]C[AG][CT]ACACACAC[AG]CACACAC[AG] -------------------------------------------------------------------------------- Time 79.72 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 8 sites = 29 llr = 306 E-value = 3.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A aa::aa:a pos.-specific C :::a:::: probability G :::::::: matrix T ::a:::a: bits 2.1 * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATCAATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr10:96463448-96463548 - 44 2.62e-05 GGAGATGATC AATCAATA GGCCATGGGA chr1:176861246-176861346 - 23 2.62e-05 ACGGAAGTTT AATCAATA ATTTCCCTTG chr10:126841766-12684186 - 53 2.62e-05 TGAATCAATC AATCAATA ATAAACACAG chr6:99324901-99325001 + 93 2.62e-05 ACAATTACCG AATCAATA chr1:88921493-88921593 - 58 2.62e-05 TCAATCAATC AATCAATA TTAATCTCTC chr15:40609804-40609904 - 11 2.62e-05 CAACTACATA AATCAATA CTGCAGACTG chr1:189328384-189328484 - 21 2.62e-05 GTTTTTGATC AATCAATA AAGATGCCAA chr6:143433448-143433548 - 13 2.62e-05 GGCAGAGACG AATCAATA GAGATAGTTG chr5:91633369-91633469 + 27 2.62e-05 CCCATTATAT AATCAATA AATTTAGGCT chr5:49364751-49364851 - 39 2.62e-05 GTCGGCCTAG AATCAATA AGTGGCAGAA chr3:121495186-121495286 + 74 2.62e-05 CAGCCCACAT AATCAATA ACTATCAGCC chr14:29474748-29474848 + 29 2.62e-05 CTTGTAGTTA AATCAATA GGCTTCCAGG chr7:104108942-104109042 - 55 2.62e-05 AAAAAGCCCA AATCAATA AAAATGGCCA chr11:113478455-11347855 + 65 2.62e-05 GACCGGACAA AATCAATA ATTGTTCTAG chr5:123143812-123143912 - 74 2.62e-05 GTTTAGTATG AATCAATA TTCTGCCCTT chr3:90289255-90289355 - 87 2.62e-05 AATCCC AATCAATA CCCATCCAGA chr1:6985983-6986083 - 68 2.62e-05 GGCAAAGGAA AATCAATA GACAATTATT chr3:77748670-77748770 + 59 2.62e-05 AAGAAGGTGA AATCAATA TTGGCAAATA chr19:44118377-44118477 + 44 2.62e-05 TAAGATCAAT AATCAATA AGCAGTTTTG chr19:44118377-44118477 + 28 2.62e-05 CCAAAAAAAT AATCAATA AGATCAATAA chr4:44990167-44990267 - 86 2.62e-05 TAGCAGT AATCAATA CATCTTTTAA chr4:60083084-60083184 - 76 2.62e-05 TTTGGCCTCT AATCAATA AATGAGAAAA chr2:31798436-31798536 - 3 2.62e-05 GTTTTTGATC AATCAATA AA chr6:141940995-141941095 + 73 2.62e-05 AAAGCATTCA AATCAATA ATTGATTTCT chr13:56401827-56401927 - 78 2.62e-05 ATCAATCATT AATCAATA AAATACCTCC chr17:44208519-44208619 - 71 2.62e-05 AAGACTTGAG AATCAATA GGTCCAATGT chr3:18363302-18363402 + 24 2.62e-05 AATTCAGAAA AATCAATA TTCAGGTGTT chr1:67314537-67314637 + 16 2.62e-05 CTTCTCAATC AATCAATA CTGAAAAGTA chr6:139801207-139801307 - 43 2.62e-05 GTGAGCAATA AATCAATA GTTCTGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:96463448-96463548 2.6e-05 43_[-3]_49 chr1:176861246-176861346 2.6e-05 22_[-3]_70 chr10:126841766-12684186 2.6e-05 52_[-3]_40 chr6:99324901-99325001 2.6e-05 92_[+3] chr1:88921493-88921593 2.6e-05 57_[-3]_35 chr15:40609804-40609904 2.6e-05 10_[-3]_82 chr1:189328384-189328484 2.6e-05 20_[-3]_72 chr6:143433448-143433548 2.6e-05 12_[-3]_80 chr5:91633369-91633469 2.6e-05 26_[+3]_66 chr5:49364751-49364851 2.6e-05 38_[-3]_54 chr3:121495186-121495286 2.6e-05 73_[+3]_19 chr14:29474748-29474848 2.6e-05 28_[+3]_64 chr7:104108942-104109042 2.6e-05 54_[-3]_38 chr11:113478455-11347855 2.6e-05 64_[+3]_28 chr5:123143812-123143912 2.6e-05 73_[-3]_19 chr3:90289255-90289355 2.6e-05 86_[-3]_6 chr1:6985983-6986083 2.6e-05 67_[-3]_25 chr3:77748670-77748770 2.6e-05 58_[+3]_34 chr19:44118377-44118477 2.6e-05 27_[+3]_8_[+3]_49 chr4:44990167-44990267 2.6e-05 85_[-3]_7 chr4:60083084-60083184 2.6e-05 75_[-3]_17 chr2:31798436-31798536 2.6e-05 2_[-3]_90 chr6:141940995-141941095 2.6e-05 72_[+3]_20 chr13:56401827-56401927 2.6e-05 77_[-3]_15 chr17:44208519-44208619 2.6e-05 70_[-3]_22 chr3:18363302-18363402 2.6e-05 23_[+3]_69 chr1:67314537-67314637 2.6e-05 15_[+3]_77 chr6:139801207-139801307 2.6e-05 42_[-3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=8 seqs=29 chr10:96463448-96463548 ( 44) AATCAATA 1 chr1:176861246-176861346 ( 23) AATCAATA 1 chr10:126841766-12684186 ( 53) AATCAATA 1 chr6:99324901-99325001 ( 93) AATCAATA 1 chr1:88921493-88921593 ( 58) AATCAATA 1 chr15:40609804-40609904 ( 11) AATCAATA 1 chr1:189328384-189328484 ( 21) AATCAATA 1 chr6:143433448-143433548 ( 13) AATCAATA 1 chr5:91633369-91633469 ( 27) AATCAATA 1 chr5:49364751-49364851 ( 39) AATCAATA 1 chr3:121495186-121495286 ( 74) AATCAATA 1 chr14:29474748-29474848 ( 29) AATCAATA 1 chr7:104108942-104109042 ( 55) AATCAATA 1 chr11:113478455-11347855 ( 65) AATCAATA 1 chr5:123143812-123143912 ( 74) AATCAATA 1 chr3:90289255-90289355 ( 87) AATCAATA 1 chr1:6985983-6986083 ( 68) AATCAATA 1 chr3:77748670-77748770 ( 59) AATCAATA 1 chr19:44118377-44118477 ( 44) AATCAATA 1 chr19:44118377-44118477 ( 28) AATCAATA 1 chr4:44990167-44990267 ( 86) AATCAATA 1 chr4:60083084-60083184 ( 76) AATCAATA 1 chr2:31798436-31798536 ( 3) AATCAATA 1 chr6:141940995-141941095 ( 73) AATCAATA 1 chr13:56401827-56401927 ( 78) AATCAATA 1 chr17:44208519-44208619 ( 71) AATCAATA 1 chr3:18363302-18363402 ( 24) AATCAATA 1 chr1:67314537-67314637 ( 16) AATCAATA 1 chr6:139801207-139801307 ( 43) AATCAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.7945 E= 3.8e-001 187 -1150 -1150 -1150 187 -1150 -1150 -1150 -1150 -1150 -1150 187 -1150 214 -1150 -1150 187 -1150 -1150 -1150 187 -1150 -1150 -1150 -1150 -1150 -1150 187 187 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.8e-001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- AATCAATA -------------------------------------------------------------------------------- Time 111.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:153567364-153567464 9.68e-02 100 chr18:12945500-12945600 6.26e-01 100 chr7:71304532-71304632 9.86e-01 100 chr16:11404042-11404142 7.25e-01 100 chr2:156311895-156311995 9.63e-01 100 chr1:31048723-31048823 2.35e-01 100 chr12:101630644-10163074 5.94e-01 100 chrX:121299580-121299680 9.95e-01 100 chr5:138838327-138838427 9.53e-01 100 chr16:81187799-81187899 6.88e-02 70_[+1(7.66e-05)]_9 chr16:28991262-28991362 4.54e-01 100 chr3:18139771-18139871 8.58e-02 100 chr11:51901047-51901147 8.27e-01 100 chr10:24191297-24191397 7.91e-01 100 chr9:96742519-96742619 5.48e-01 100 chr11:112937651-11293775 9.73e-01 100 chr3:54326466-54326566 9.68e-01 100 chr13:52186465-52186565 9.86e-01 100 chr6:139801207-139801307 1.70e-02 42_[-3(2.62e-05)]_50 chr11:84496122-84496222 5.06e-01 100 chr3:131010583-131010683 9.35e-01 100 chr13:42762124-42762224 1.16e-02 75_[+1(4.15e-05)]_4 chr1:67314537-67314637 3.92e-02 15_[+3(2.62e-05)]_77 chr3:18363302-18363402 1.38e-02 23_[+3(2.62e-05)]_69 chr9:47391036-47391136 7.14e-01 100 chr16:24238268-24238368 9.28e-01 100 chr8:71404206-71404306 2.41e-01 100 chr3:88913722-88913822 9.52e-01 100 chr17:64992865-64992965 6.79e-01 100 chr8:95707130-95707230 6.22e-01 100 chr4:134459576-134459676 9.97e-01 100 chr13:102548880-10254898 1.50e-01 100 chr9:115061269-115061369 5.42e-02 14_[+2(4.52e-05)]_57 chr1:102393275-102393375 1.03e-02 13_[-1(1.56e-06)]_66 chr11:16777687-16777787 9.98e-01 100 chr8:46409614-46409714 1.83e-03 47_[-1(4.90e-06)]_32 chr11:28902557-28902657 9.36e-01 100 chr5:147408827-147408927 6.39e-01 100 chr15:37736017-37736117 7.91e-01 100 chr4:66791110-66791210 1.36e-01 100 chr18:12856365-12856465 8.33e-01 100 chr19:46206120-46206220 6.63e-01 100 chr15:88726720-88726820 5.52e-01 100 chr18:12882894-12882994 9.68e-01 100 chr4:104476671-104476771 5.25e-01 100 chr4:154690769-154690869 9.90e-01 100 chr6:85770692-85770792 9.83e-01 100 chr6:149163971-149164071 6.71e-01 100 chr16:10757994-10758094 1.00e+00 100 chrX:74912262-74912362 1.71e-01 100 chr4:117621196-117621296 9.99e-01 100 chr12:28579400-28579500 5.20e-01 100 chr8:37075705-37075805 3.23e-01 100 chr4:149801050-149801150 3.76e-01 100 chr17:34069532-34069632 6.56e-02 69_[-1(7.02e-05)]_10 chr3:18195834-18195934 4.80e-04 11_[-1(4.12e-07)]_68 chr19:21701042-21701142 3.51e-01 100 chr15:4511528-4511628 9.09e-01 100 chr9:71013201-71013301 8.08e-02 100 chr14:75454536-75454636 5.92e-01 100 chr2:126375331-126375431 3.71e-01 100 chr4:87829853-87829953 1.46e-01 100 chr3:32474046-32474146 6.99e-01 100 chr2:22525926-22526026 8.24e-01 100 chr13:69781080-69781180 1.00e+00 100 chr11:16738575-16738675 9.60e-01 100 chr15:27563714-27563814 9.97e-01 100 chr5:38887590-38887690 9.97e-01 100 chr6:50681024-50681124 9.24e-01 100 chr4:107804845-107804945 9.53e-01 100 chr3:122668921-122669021 3.85e-01 100 chr17:44208519-44208619 3.58e-02 70_[-3(2.62e-05)]_22 chr2:28863244-28863344 7.08e-01 100 chr2:163710471-163710571 9.64e-01 100 chr4:107720042-107720142 3.57e-02 71_[+2(2.59e-05)] chr9:69683039-69683139 1.90e-01 100 chr13:56401827-56401927 1.86e-03 77_[-3(2.62e-05)]_15 chr3:98449285-98449385 8.67e-01 100 chr11:16737140-16737240 1.95e-01 100 chr3:54321050-54321150 3.11e-02 79_[+1(2.28e-05)] chr15:6396602-6396702 9.92e-01 100 chr9:105657020-105657120 7.88e-14 18_[-2(7.39e-18)]_53 chr14:21803861-21803961 7.37e-01 100 chr6:141940995-141941095 8.08e-09 4_[-1(3.60e-10)]_47_[+3(2.62e-05)]_\ 20 chr16:76453865-76453965 2.73e-01 100 chr3:94484773-94484873 9.90e-01 100 chr9:79913200-79913300 8.20e-01 100 chr4:96668024-96668124 1.56e-02 68_[-1(4.54e-06)]_11 chr8:107618003-107618103 9.99e-01 100 chr17:44194027-44194127 5.86e-03 62_[+1(4.37e-05)]_17 chr14:66378160-66378260 8.88e-01 100 chr19:53478672-53478772 8.15e-01 100 chr8:121972275-121972375 1.24e-01 16_[-2(9.08e-05)]_55 chr16:38599275-38599375 1.16e-01 100 chr7:74313074-74313174 9.52e-01 100 chr16:24223454-24223554 1.15e-01 100 chr9:61545754-61545854 9.92e-01 100 chr3:104426642-104426742 7.17e-01 100 chrX:120777804-120777904 3.78e-01 100 chr18:12800458-12800558 5.39e-01 100 chr13:96433831-96433931 9.63e-01 100 chr2:163134068-163134168 1.53e-01 23_[-2(9.94e-05)]_48 chr9:115993284-115993384 2.83e-01 100 chr4:104511607-104511707 9.18e-02 100 chr3:60895858-60895958 7.61e-01 100 chrX:63286022-63286122 3.74e-01 100 chr17:28844759-28844859 7.98e-02 100 chrX:142207506-142207606 4.59e-01 100 chr4:104761992-104762092 1.37e-11 61_[+2(2.95e-15)]_10 chr7:36528907-36529007 9.91e-01 100 chr4:107750453-107750553 8.30e-01 100 chr11:27873821-27873921 3.84e-01 100 chr13:58862402-58862502 1.00e+00 100 chr14:11991795-11991895 6.66e-09 14_[+1(1.56e-12)]_65 chr11:119086214-11908631 1.00e+00 100 chrX:147926498-147926598 9.66e-01 100 chr8:6006457-6006557 6.27e-01 100 chr4:63796040-63796140 4.25e-01 100 chr11:16757226-16757326 7.07e-01 100 chr7:126775101-126775201 3.87e-04 67_[-1(6.86e-08)]_12 chr15:96733862-96733962 1.83e-02 100 chr5:80243080-80243180 8.39e-01 100 chr17:30746434-30746534 9.45e-01 100 chr1:184532321-184532421 2.65e-02 69_[+1(6.13e-05)]_10 chr12:105321792-10532189 9.99e-01 100 chr15:8273986-8274086 7.76e-05 35_[+1(4.70e-08)]_44 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