Invoking: fasta-get-markov -nostatus -m 1 < Static_Male-biased_Output/Static_Male-biased.fa 1> Static_Male-biased_Output/background Finished invoke: name: bg status: 0 time: 0.036848 Invoking: getsize Static_Male-biased_Output/Static_Male-biased.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.032376 Invoking: fasta-most -min 50 < Static_Male-biased_Output/Static_Male-biased.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.083587 Invoking: fasta-center -len 100 < Static_Male-biased_Output/Static_Male-biased.fa 1> Static_Male-biased_Output/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.133738 Invoking: fasta-dinucleotide-shuffle -f Static_Male-biased_Output/seqs-centered -t -dinuc 1> Static_Male-biased_Output/seqs-shuffled Finished invoke: name: shuffle_seqs status: 0 time: 1.412268 Invoking: fasta-subsample Static_Male-biased_Output/seqs-centered 600 -rest Static_Male-biased_Output/seqs-discarded 1> Static_Male-biased_Output/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.100718 Invoking: meme Static_Male-biased_Output/seqs-sampled -oc Static_Male-biased_Output/meme_out -dna -mod anr -nmotifs 3 -minw 6 -maxw 30 -bfile Static_Male-biased_Output/background -p 16 -revcomp -nostatus Finished invoke: name: meme status: 0 time: 126.238855 Invoking: dreme -v 1 -oc Static_Male-biased_Output/dreme_out -p Static_Male-biased_Output/seqs-centered -n Static_Male-biased_Output/seqs-shuffled -png Finished invoke: name: dreme status: 0 time: 111.62363 Invoking: centrimo -seqlen 500 -verbosity 1 -oc Static_Male-biased_Output/centrimo_out -bgfile Static_Male-biased_Output/background Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: centrimo status: 0 time: 21.267156 Invoking: tomtom -verbosity 1 -oc Static_Male-biased_Output/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile Static_Male-biased_Output/background Static_Male-biased_Output/meme_out/meme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: meme_tomtom status: 0 time: 13.646534 Invoking: tomtom -verbosity 1 -oc Static_Male-biased_Output/dreme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile Static_Male-biased_Output/background Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: dreme_tomtom status: 0 time: 1.919889 Invoking: tomtom -verbosity 1 -text -thresh 0.1 Static_Male-biased_Output/combined.meme Static_Male-biased_Output/combined.meme 1> Static_Male-biased_Output/motif_alignment.txt Finished invoke: name: align status: 0 time: 6.880261 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_1 -bgfile Static_Male-biased_Output/background -primary 1 Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo1 status: 0 time: 12.925673 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_2 -bgfile Static_Male-biased_Output/background -primary ATYGATY Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo2 status: 0 time: 15.982705 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_3 -bgfile Static_Male-biased_Output/background -primary TRTTTR Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo3 status: 0 time: 37.15827 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_4 -bgfile Static_Male-biased_Output/background -primary CAAAGKY Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo4 status: 0 time: 17.650042 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_5 -bgfile Static_Male-biased_Output/background -primary CMSAG Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo5 status: 0 time: 61.140912 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_6 -bgfile Static_Male-biased_Output/background -primary MA0102.3 Static_Male-biased_Output/Static_Male-biased.fa ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo6 status: 0 time: 20.046391 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_7 -bgfile Static_Male-biased_Output/background -primary TGACCTW Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo7 status: 0 time: 10.96162 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_8 -bgfile Static_Male-biased_Output/background -primary UP00066_1 Static_Male-biased_Output/Static_Male-biased.fa ./uniprobe_mouse.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo8 status: 0 time: 20.619554 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_9 -bgfile Static_Male-biased_Output/background -primary MA0148.3 Static_Male-biased_Output/Static_Male-biased.fa ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo9 status: 0 time: 23.484239 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_10 -bgfile Static_Male-biased_Output/background -primary 2 Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo10 status: 0 time: 2.99857 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_11 -bgfile Static_Male-biased_Output/background -primary CCWGGAA Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo11 status: 0 time: 11.500328 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_12 -bgfile Static_Male-biased_Output/background -primary CACGKG Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo12 status: 0 time: 7.256 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_13 -bgfile Static_Male-biased_Output/background -primary MA0597.1 Static_Male-biased_Output/Static_Male-biased.fa ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo13 status: 0 time: 40.499048 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_14 -bgfile Static_Male-biased_Output/background -primary TGGCW Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo14 status: 0 time: 52.82178 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_15 -bgfile Static_Male-biased_Output/background -primary UP00035_2 Static_Male-biased_Output/Static_Male-biased.fa ./uniprobe_mouse.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo15 status: 0 time: 22.772957 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_16 -bgfile Static_Male-biased_Output/background -primary CCCWCCCC Static_Male-biased_Output/Static_Male-biased.fa Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo16 status: 0 time: 5.958714 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_17 -bgfile Static_Male-biased_Output/background -primary MA0014.2 Static_Male-biased_Output/Static_Male-biased.fa ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo17 status: 0 time: 13.223505 Invoking: spamo -verbosity 1 -oc Static_Male-biased_Output/spamo_out_18 -bgfile Static_Male-biased_Output/background -primary UP00031_2 Static_Male-biased_Output/Static_Male-biased.fa ./uniprobe_mouse.meme Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/dreme_out/dreme.xml ./JASPAR_CORE_2014_vertebrates.meme ./uniprobe_mouse.meme Finished invoke: name: spamo18 status: 0 time: 36.049973 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_1 --bgfile Static_Male-biased_Output/background --motif 1 Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo1 status: 0 time: 1.909142 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_2 --bgfile Static_Male-biased_Output/background --motif ATYGATY Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo2 status: 0 time: 0.416643 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_3 --bgfile Static_Male-biased_Output/background --motif TRTTTR Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo3 status: 0 time: 0.287164 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_4 --bgfile Static_Male-biased_Output/background --motif CAAAGKY Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo4 status: 0 time: 0.361346 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_5 --bgfile Static_Male-biased_Output/background --motif CMSAG Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo5 status: 0 time: 0.286535 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_6 --bgfile Static_Male-biased_Output/background --motif MA0102.3 ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo6 status: 0 time: 0.441842 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_7 --bgfile Static_Male-biased_Output/background --motif TGACCTW Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo7 status: 0 time: 0.354553 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_8 --bgfile Static_Male-biased_Output/background --motif UP00066_1 ./uniprobe_mouse.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo8 status: 0 time: 0.624452 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_9 --bgfile Static_Male-biased_Output/background --motif MA0148.3 ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo9 status: 0 time: 0.488956 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_10 --bgfile Static_Male-biased_Output/background --motif 2 Static_Male-biased_Output/meme_out/meme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo10 status: 0 time: 1.743689 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_11 --bgfile Static_Male-biased_Output/background --motif CCWGGAA Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo11 status: 0 time: 0.385048 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_12 --bgfile Static_Male-biased_Output/background --motif CACGKG Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo12 status: 0 time: 0.296813 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_13 --bgfile Static_Male-biased_Output/background --motif MA0597.1 ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo13 status: 0 time: 0.43849 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_14 --bgfile Static_Male-biased_Output/background --motif TGGCW Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo14 status: 0 time: 0.301227 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_15 --bgfile Static_Male-biased_Output/background --motif UP00035_2 ./uniprobe_mouse.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo15 status: 0 time: 0.616081 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_16 --bgfile Static_Male-biased_Output/background --motif CCCWCCCC Static_Male-biased_Output/dreme_out/dreme.xml Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo16 status: 0 time: 0.448166 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_17 --bgfile Static_Male-biased_Output/background --motif MA0014.2 ./JASPAR_CORE_2014_vertebrates.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo17 status: 0 time: 0.44938 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc Static_Male-biased_Output/fimo_out_18 --bgfile Static_Male-biased_Output/background --motif UP00031_2 ./uniprobe_mouse.meme Static_Male-biased_Output/Static_Male-biased.fa Finished invoke: name: fimo18 status: 0 time: 0.655195 Writing output Done