<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<?xml-stylesheet type="text/xsl" href="fimo-to-html.xsl"?>
<!-- Begin document body -->
<fimo version="4.10.0" release="Wed May 21 10:35:36 2014 +1000">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>/share/pkg/meme/4.10.0_4/install/bin/fimo --parse-genomic-coord --verbosity 1 --oc Static_Sex-independent_Output/fimo_out_21 --bgfile Static_Sex-independent_Output/background --motif AGRDGGCG Static_Sex-independent_Output/dreme_out/dreme.xml Static_Sex-independent_Output/Static_Sex-independent.fa</command-line>
<settings>
<setting name="output directory">Static_Sex-independent_Output/fimo_out_21</setting>
<setting name="MEME file name">Static_Sex-independent_Output/dreme_out/dreme.xml</setting>
<setting name="sequence file name">Static_Sex-independent_Output/Static_Sex-independent.fa</setting>
<setting name="background file name">Static_Sex-independent_Output/background</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">true</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="max sequence length">250000000</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">100000</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">1</setting>
<setting name="selected motif">AGRDGGCG</setting>
</settings>
<sequence-data num-sequences="67058" num-residues="33529000" />
<alphabet>nucleotide</alphabet>
<motif name="VGGAAR" width="6" best-possible-match="AGGAAG"/>
<motif name="RTAAAYA" width="7" best-possible-match="GTAAACA"/>
<motif name="RAGKTCA" width="7" best-possible-match="AAGGTCA"/>
<motif name="CYCCDCCC" width="8" best-possible-match="CCCCTCCC"/>
<motif name="WGCCAR" width="6" best-possible-match="AGCCAG"/>
<motif name="ACACRB" width="6" best-possible-match="ACACAG"/>
<motif name="CHGGRA" width="6" best-possible-match="CTGGGA"/>
<motif name="AGRDGGCG" width="8" best-possible-match="AGGGGGCG"/>
<motif name="ARCAAAYA" width="8" best-possible-match="AACAAACA"/>
<motif name="TTATYW" width="6" best-possible-match="TTATCT"/>
<motif name="AGGHCA" width="6" best-possible-match="AGGCCA"/>
<motif name="CACGTG" width="6" best-possible-match="CACGTG"/>
<motif name="CYGCCDCC" width="8" best-possible-match="CTGCCGCC"/>
<motif name="AATCAWTA" width="8" best-possible-match="AATCAATA"/>
<motif name="CARAGTCC" width="8" best-possible-match="CAAAGTCC"/>
<motif name="TTAYRYAA" width="8" best-possible-match="TTACACAA"/>
<motif name="AAARMAAA" width="8" best-possible-match="AAAAAAAA"/>
<motif name="TGACGTMA" width="8" best-possible-match="TGACGTCA"/>
<motif name="RGAAAB" width="6" best-possible-match="AGAAAG"/>
<motif name="GGGMGGGA" width="8" best-possible-match="GGGAGGGA"/>
<motif name="ARAGGGCA" width="8" best-possible-match="AGAGGGCA"/>
<motif name="CASAGM" width="6" best-possible-match="CAGAGC"/>
<motif name="AAATAY" width="6" best-possible-match="AAATAC"/>
<motif name="CCACRYCC" width="8" best-possible-match="CCACACCC"/>
<motif name="GCVTGCGY" width="8" best-possible-match="GCCTGCGC"/>
<motif name="GTSACAK" width="7" best-possible-match="GTGACAG"/>
<motif name="TTTAWW" width="6" best-possible-match="TTTAAT"/>
<motif name="CSTCCTCC" width="8" best-possible-match="CCTCCTCC"/>
<motif name="CAAAGGTY" width="8" best-possible-match="CAAAGGTT"/>
<motif name="CAGGMTG" width="7" best-possible-match="CAGGCTG"/>
<motif name="GCDGCMGC" width="8" best-possible-match="GCAGCAGC"/>
<motif name="CTGAGYCA" width="8" best-possible-match="CTGAGTCA"/>
<motif name="CTGTAAYY" width="8" best-possible-match="CTGTAACT"/>
<motif name="STGGCCA" width="7" best-possible-match="CTGGCCA"/>
<motif name="MCGTGR" width="6" best-possible-match="CCGTGG"/>
<motif name="CTTTRMCC" width="8" best-possible-match="CTTTGCCC"/>
<motif name="GATCAATA" width="8" best-possible-match="GATCAATA"/>
<motif name="ATGGCGKC" width="8" best-possible-match="ATGGCGGC"/>
<motif name="CCBGCCTC" width="8" best-possible-match="CCTGCCTC"/>
<motif name="CTGGGYW" width="7" best-possible-match="CTGGGCT"/>
<motif name="TTGTGMAA" width="8" best-possible-match="TTGTGCAA"/>
<motif name="CVGGGTCA" width="8" best-possible-match="CAGGGTCA"/>
<motif name="GTTAATBA" width="8" best-possible-match="GTTAATCA"/>
<motif name="CAGCHCCG" width="8" best-possible-match="CAGCCCCG"/>
<motif name="AAAGTMCA" width="8" best-possible-match="AAAGTACA"/>
<motif name="CGGKGAC" width="7" best-possible-match="CGGGGAC"/>
<motif name="AGRTGGCA" width="8" best-possible-match="AGATGGCA"/>
<motif name="AAACATTW" width="8" best-possible-match="AAACATTT"/>
<motif name="ATKWCATC" width="8" best-possible-match="ATGTCATC"/>
<motif name="CCGBAGCC" width="8" best-possible-match="CCGCAGCC"/>
<motif name="GCCATGK" width="7" best-possible-match="GCCATGG"/>
<motif name="TACADA" width="6" best-possible-match="TACAAA"/>
<motif name="GMAAACA" width="7" best-possible-match="GCAAACA"/>
<motif name="AGGCDGAG" width="8" best-possible-match="AGGCTGAG"/>
<motif name="ATCGATH" width="7" best-possible-match="ATCGATC"/>
<motif name="GCTGGRGA" width="8" best-possible-match="GCTGGAGA"/>
<motif name="TTAYGAAA" width="8" best-possible-match="TTATGAAA"/>
<motif name="CCCGCCC" width="7" best-possible-match="CCCGCCC"/>
<motif name="TGKGGACA" width="8" best-possible-match="TGGGGACA"/>
<motif name="CCABCTCC" width="8" best-possible-match="CCACCTCC"/>
<motif name="CCGVGTCC" width="8" best-possible-match="CCGCGTCC"/>
<motif name="TATTGACW" width="8" best-possible-match="TATTGACT"/>
<motif name="GATGAYGA" width="8" best-possible-match="GATGATGA"/>
<background source="Static_Sex-independent_Output/background">
<value letter="A">0.241</value>
<value letter="C">0.259</value>
<value letter="G">0.259</value>
<value letter="T">0.241</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
