G138-M10-Index-1_ATCACG_BC9WPLANXX_L002_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G138-M10-Index-1_ATCACG_BC9WPLANXX_L002_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16446845
Sequences flagged as poor quality	0
Sequence length	50
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	173073	1.0523173289466763	TruSeq Adapter, Index 1 (100% over 50bp)
CTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGCGGCCGGAGGGCTGT	26488	0.16105216532410926	No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC	23036	0.14006333737564863	No Hit
GCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGG	18502	0.1124957400644318	No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT	17348	0.105479196769958	No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG	17092	0.10392266723496209	No Hit
GCGGCGACGGGTATCTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGC	17054	0.10369161988211112	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	21120	42.194077	1
GATCTCG	19325	41.22587	39
TCACGAT	20080	41.13568	35
ACGTCTG	21805	41.09589	15
CGTCTGA	21815	41.015656	16
CTCGTAT	20555	40.92687	42
ACGATCT	19525	40.76131	37
CACGATC	19550	40.74289	36
TCGGAAG	22105	40.484665	3
ACACGTC	22390	40.043503	13
CGGAAGA	22375	39.93008	4
CACACGT	22810	39.395092	12
CACGTCT	22845	39.29186	14
TCGTATG	22250	39.250355	43
CGATCTC	20465	38.88728	38
ACATCAC	23020	38.450768	32
CGTATGC	22855	38.20174	44
GAACTCC	23565	38.07154	21
GTCACAT	23575	37.649216	29
CAGTCAC	24030	37.02583	27