getRow("select * from bedfile where bedfile_id = ?", array($_GET['id']));
$title = "BED file info";
require_once 'header.inc.php';
print '« Back to Experiment';
print "$info[name]
\n";
//overlap_counts_chart_url | text | YES | | NULL | |
//| overlaps_per_read_chart_url
if($info['overlap_counts_chart_url']) {
print "![](\"$info[overlap_counts_chart_url]\")
\n";
print "Figure 1: Overlap-counts distributed across all chromosomes.
";
}
if($info['overlaps_per_read_chart_url']) {
print "![](\"$info[overlaps_per_read_chart_url]\")
\n";
print "Figure 2: Overlaps-per-pead (OPR) for the merged BED file. Intuitively, a higher OPR curve indicates that the two samples overlap better.
";
}
?>
query('update bedfile set table_of_reads = ?, read_count = ?, read_dist_chart = ? where bedfile_id = ?', array($cts['table_of_reads'], $cts['read_count'], $cts['read_dist_chart'], $_GET['id']));
$db->commit();
$info = $db->getRow("select * from bedfile where bedfile_id = ?", array($_GET['id']));
}
require_once 'preview.php';
$pre = bedfile_preview($_GET['id']);
//$db->query('update bedfile set table_of_preview = ?, where bedfile_id = ?', array($pre['table_of_preview'], $_GET['id']));
//$db->commit();
//$preview = $db->getRow("select * from bedfile where bedfile_id = ?", array($_GET['id']));
?>
Table of Read Count by Chromosome
Total number of reads for this BED file is:
Distribution of Reads
Bed file preview