Bioinformatics BRITE REU Project 2017
Made By: Rowan Ogilvie
My name is Rowan and I am still learning how this works!
I'm an avid photographer, here is my photography portfolio.
Goals of Project
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- Functional Database
- Tasks include basic upload, storage and retrieval of BED files and their associated information.
- The functions that remain to be added are edit, delete, and copy.
- Some functions that need improvement are display of the appropriate fields, and forms for input (for example, using drop down menus instead of text fields that ask for table IDs)
- Bedtools interface
- We envisioned the usage of several bedtools commands. The team only implemented one command, but given that they have a structure in place for interfacing with bedtools, it should be easy to add new commands
- Multiple users and user levels
- The team set up the basic system in place for associating experiments with particular users, but there are a few bugs that still need to be worked out.
- The team successfully implemented some tasks that are only available for admins, such as insertion and removal of platform, computational method, and wet-lab method.
- UCSC Genome Browser interface
- none of which has been implemented