-----------------------
Start of variable list:
-----------------------
Sample_ID:
CV_CO3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 29 14:50:55 EDT 2019
Running on node : scc-ka8
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree/Scripts/03_Read_Length
Current job ID : 5762868
Current job name : Step_03_CV_CO3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5762868.1.linga

Loading required modules...


List files in scratch directory:

total 5.5G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 15:03 .
drwxrwxrwt. 70 root   root       72K Apr 29 15:06 ..
-rw-r--r--   1 kkarri waxmanlab 2.8G Apr 29 15:03 SRR5849977_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 2.7G Apr 29 15:06 SRR5849977_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5849977_1.fastq


Processing SRR5849977_2.fastq


Ending Read Length


List files in scratch

total 19G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 15:10 .
drwxrwxrwt. 74 root   root       72K Apr 29 15:12 ..
-rw-r--r--   1 kkarri waxmanlab 9.5G Apr 29 15:03 SRR5849977_1.fastq
-rw-r--r--   1 kkarri waxmanlab 9.5G Apr 29 15:06 SRR5849977_2.fastq
==========================================================
Finished on : Mon Apr 29 15:15:02 EDT 2019
0 hours, 24 minutes and 7 seconds elapsed.
==========================================================