-----------------------
Start of variable list:
-----------------------
Sample_ID:
12h_Act2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Apr 24 14:31:25 EDT 2019
Running on node : scc-ka1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/03_Read_Length
Current job ID : 5555283
Current job name : Step_03_12h_Act2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5555283.1.linga

Loading required modules...


List files in scratch directory:

total 1017M
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:31 .
drwxrwxrwt. 68 root   root      124K Apr 24 14:31 ..
-rw-r--r--   1 kkarri waxmanlab 495M Apr 24 14:31 SRR6833757_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 522M Apr 24 14:31 SRR6833757_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6833757_R1.fastq


Processing SRR6833757_R2.fastq


Ending Read Length


List files in scratch

total 4.3G
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:32 .
drwxrwxrwt. 72 root   root      124K Apr 24 14:33 ..
-rw-r--r--   1 kkarri waxmanlab 2.2G Apr 24 14:31 SRR6833757_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 2.2G Apr 24 14:31 SRR6833757_R2.fastq
==========================================================
Finished on : Wed Apr 24 14:33:54 EDT 2019
0 hours, 2 minutes and 32 seconds elapsed.
==========================================================