-----------------------
Start of variable list:
-----------------------
Sample_ID:
48h_Act1
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Apr 24 14:31:42 EDT 2019
Running on node : scc-ka1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/03_Read_Length
Current job ID : 5555294
Current job name : Step_03_48h_Act1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5555294.1.linga

Loading required modules...


List files in scratch directory:

total 1.1G
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:32 .
drwxrwxrwt. 68 root   root      124K Apr 24 14:31 ..
-rw-r--r--   1 kkarri waxmanlab 529M Apr 24 14:32 SRR6833768_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 562M Apr 24 14:32 SRR6833768_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6833768_R1.fastq


Processing SRR6833768_R2.fastq


Ending Read Length


List files in scratch

total 4.6G
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:33 .
drwxrwxrwt. 69 root   root      124K Apr 24 14:36 ..
-rw-r--r--   1 kkarri waxmanlab 2.3G Apr 24 14:32 SRR6833768_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 2.3G Apr 24 14:32 SRR6833768_R2.fastq
==========================================================
Finished on : Wed Apr 24 14:40:36 EDT 2019
0 hours, 9 minutes and 9 seconds elapsed.
==========================================================