-----------------------
Start of variable list:
-----------------------
Sample_ID:
Con_WT3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Apr 24 14:31:25 EDT 2019
Running on node : scc-ka1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE111828_actiminophen/Scripts/03_Read_Length
Current job ID : 5555280
Current job name : Step_03_Con_WT3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5555280.1.linga

Loading required modules...


List files in scratch directory:

total 755M
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:31 .
drwxrwxrwt. 68 root   root      124K Apr 24 14:31 ..
-rw-r--r--   1 kkarri waxmanlab 368M Apr 24 14:31 SRR6833754_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 388M Apr 24 14:31 SRR6833754_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6833754_R1.fastq


Processing SRR6833754_R2.fastq


Ending Read Length


List files in scratch

total 3.1G
drwx------   2 kkarri waxmanlab 4.0K Apr 24 14:32 .
drwxrwxrwt. 67 root   root      124K Apr 24 14:32 ..
-rw-r--r--   1 kkarri waxmanlab 1.6G Apr 24 14:31 SRR6833754_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 1.6G Apr 24 14:31 SRR6833754_R2.fastq
==========================================================
Finished on : Wed Apr 24 14:33:10 EDT 2019
0 hours, 1 minutes and 45 seconds elapsed.
==========================================================