-----------------------
Start of variable list:
-----------------------
Sample_ID:
PB1
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE77729_PB/ENA
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE77729_PB/ENA/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue Apr 30 12:02:47 EDT 2019
Running on node : scc-bd4
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE77729_PB/ENA/Scripts/03_Read_Length
Current job ID : 5785287
Current job name : Step_03_PB1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5785287.1.b

Loading required modules...


List files in scratch directory:

total 4.5G
drwx------   2 kkarri waxmanlab 4.0K Apr 30 12:05 .
drwxrwxrwt. 20 root   root       20K Apr 30 12:02 ..
-rw-r--r--   1 kkarri waxmanlab 2.2G Apr 30 12:05 SRR3157438_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 2.3G Apr 30 12:07 SRR3157438_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR3157438_R1.fastq


Processing SRR3157438_R2.fastq


Ending Read Length


List files in scratch

total 15G
drwx------   2 kkarri waxmanlab 4.0K Apr 30 12:09 .
drwxrwxrwt. 20 root   root       20K Apr 30 12:02 ..
-rw-r--r--   1 kkarri waxmanlab 7.2G Apr 30 12:05 SRR3157438_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 7.2G Apr 30 12:07 SRR3157438_R2.fastq
==========================================================
Finished on : Tue Apr 30 12:11:59 EDT 2019
0 hours, 9 minutes and 13 seconds elapsed.
==========================================================