-----------------------
Start of variable list:
-----------------------
Sample_ID:
G123_M7
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/G123_Env
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/G123_Env/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue Dec 18 14:17:07 EST 2018
Running on node : scc-ka2
Current directory : /restricted/projectnb/waxmanlab/kkarri/G123_Env/Scripts/03_Read_Length
Current job ID : 359380
Current job name : Step_03_G123_M7
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/359380.1.linga

Loading required modules...


List files in scratch directory:

total 1.7G
drwx------   2 kkarri waxmanlab 4.0K Dec 18 14:18 .
drwxrwxrwt. 27 root   root      116K Dec 18 14:17 ..
-rw-r-----   1 kkarri waxmanlab 855M Dec 18 14:18 G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R1.fastq.gz
-rw-r-----   1 kkarri waxmanlab 877M Dec 18 14:19 G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R1.fastq


Processing G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R2.fastq


Ending Read Length


List files in scratch

total 5.9G
drwx------   2 kkarri waxmanlab 4.0K Dec 18 14:21 .
drwxrwxrwt. 26 root   root      116K Dec 18 14:22 ..
-rw-r-----   1 kkarri waxmanlab 3.0G Dec 18 14:18 G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R1.fastq
-rw-r-----   1 kkarri waxmanlab 3.0G Dec 18 14:19 G123-pool-CAGATC_CAGATC_BC8TK0ANXX_L008_001.R2.fastq
==========================================================
Finished on : Tue Dec 18 14:22:45 EST 2018
0 hours, 5 minutes and 39 seconds elapsed.
==========================================================