#--------------------------------------------------------------
Run time for each submitted job:
Job run times that deviate from the average should be inspected for possible errors (check the job log files)
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02_FASTQC
03_Read_Length
Step_03_G160_M1.o373605:0 hours, 1 minutes and 54 seconds elapsed.
Step_03_G160_M2.o373606:0 hours, 2 minutes and 13 seconds elapsed.
Step_03_G160_M3.o373607:0 hours, 4 minutes and 38 seconds elapsed.
Step_03_G160_M4.o373608:0 hours, 1 minutes and 49 seconds elapsed.
Step_03_G160_M5.o373609:0 hours, 2 minutes and 33 seconds elapsed.
Step_03_G160_M6.o373610:0 hours, 2 minutes and 13 seconds elapsed.
04_TopHat_Paired_End
Step_04_G160_M1.o373620:2 hours, 57 minutes and 12 seconds elapsed.
Step_04_G160_M2.o373621:4 hours, 3 minutes and 34 seconds elapsed.
Step_04_G160_M3.o373622:1 hours, 37 minutes and 37 seconds elapsed.
Step_04_G160_M4.o373623:1 hours, 9 minutes and 28 seconds elapsed.
Step_04_G160_M5.o373624:3 hours, 34 minutes and 29 seconds elapsed.
Step_04_G160_M6.o373625:4 hours, 1 minutes and 27 seconds elapsed.
05_Read_Strandness
Step_05_G160_M1.o377789:0 hours, 0 minutes and 16 seconds elapsed.
Step_05_G160_M2.o377790:0 hours, 0 minutes and 14 seconds elapsed.
Step_05_G160_M3.o377791:0 hours, 0 minutes and 22 seconds elapsed.
Step_05_G160_M4.o377792:0 hours, 0 minutes and 17 seconds elapsed.
Step_05_G160_M5.o377793:0 hours, 0 minutes and 16 seconds elapsed.
Step_05_G160_M6.o377794:0 hours, 0 minutes and 18 seconds elapsed.
06_CollectRnaSeqMetrics
Step_06_G160_M1.o377880:0 hours, 6 minutes and 15 seconds elapsed.
Step_06_G160_M2.o377881:0 hours, 3 minutes and 49 seconds elapsed.
Step_06_G160_M3.o377882:0 hours, 3 minutes and 40 seconds elapsed.
Step_06_G160_M4.o377883:0 hours, 3 minutes and 14 seconds elapsed.
Step_06_G160_M5.o377884:0 hours, 8 minutes and 19 seconds elapsed.
Step_06_G160_M6.o377885:0 hours, 4 minutes and 23 seconds elapsed.
07_CollectInsertSizeMetrics
Step_07_G160_M1.o378017:0 hours, 1 minutes and 16 seconds elapsed.
Step_07_G160_M2.o378018:0 hours, 2 minutes and 19 seconds elapsed.
Step_07_G160_M3.o378019:0 hours, 5 minutes and 5 seconds elapsed.
Step_07_G160_M4.o378020:0 hours, 0 minutes and 57 seconds elapsed.
Step_07_G160_M5.o378021:0 hours, 4 minutes and 28 seconds elapsed.
Step_07_G160_M6.o378022:0 hours, 3 minutes and 30 seconds elapsed.
08a_Extract_Counts_HTSeq
Step_08a_G160_M1.o378104:0 hours, 17 minutes and 44 seconds elapsed.
Step_08a_G160_M1.o378105:0 hours, 35 minutes and 37 seconds elapsed.
Step_08a_G160_M1.o378106:0 hours, 31 minutes and 1 seconds elapsed.
Step_08a_G160_M1.o378107:1 hours, 40 minutes and 58 seconds elapsed.
Step_08a_G160_M2.o378108:1 hours, 13 minutes and 7 seconds elapsed.
Step_08a_G160_M2.o378109:0 hours, 58 minutes and 27 seconds elapsed.
Step_08a_G160_M2.o378110:0 hours, 50 minutes and 42 seconds elapsed.
Step_08a_G160_M2.o378111:0 hours, 55 minutes and 25 seconds elapsed.
Step_08a_G160_M3.o378112:1 hours, 1 minutes and 50 seconds elapsed.
Step_08a_G160_M3.o378113:0 hours, 59 minutes and 57 seconds elapsed.
Step_08a_G160_M3.o378114:0 hours, 49 minutes and 16 seconds elapsed.
Step_08a_G160_M3.o378115:0 hours, 49 minutes and 47 seconds elapsed.
Step_08a_G160_M4.o378116:0 hours, 22 minutes and 58 seconds elapsed.
Step_08a_G160_M4.o378117:0 hours, 28 minutes and 23 seconds elapsed.
Step_08a_G160_M4.o378118:0 hours, 24 minutes and 41 seconds elapsed.
Step_08a_G160_M4.o378119:0 hours, 24 minutes and 59 seconds elapsed.
Step_08a_G160_M5.o378120:0 hours, 24 minutes and 18 seconds elapsed.
Step_08a_G160_M5.o378121:0 hours, 57 minutes and 20 seconds elapsed.
Step_08a_G160_M5.o378122:2 hours, 18 minutes and 13 seconds elapsed.
Step_08a_G160_M5.o378123:2 hours, 2 minutes and 34 seconds elapsed.
Step_08a_G160_M6.o378124:0 hours, 30 minutes and 5 seconds elapsed.
Step_08a_G160_M6.o378125:0 hours, 35 minutes and 27 seconds elapsed.
Step_08a_G160_M6.o378126:0 hours, 32 minutes and 23 seconds elapsed.
Step_08a_G160_M6.o378127:0 hours, 31 minutes and 1 seconds elapsed.
08b_Extract_Counts_featureCounts
Step_08b_G160_M1.o380459:0 hours, 10 minutes and 11 seconds elapsed.
Step_08b_G160_M1.o380460:0 hours, 19 minutes and 55 seconds elapsed.
Step_08b_G160_M1.o380461:0 hours, 14 minutes and 44 seconds elapsed.
Step_08b_G160_M1.o380462:0 hours, 8 minutes and 39 seconds elapsed.
Step_08b_G160_M1.o380463:0 hours, 12 minutes and 35 seconds elapsed.
Step_08b_G160_M1.o380464:0 hours, 16 minutes and 35 seconds elapsed.
Step_08b_G160_M1.o380465:0 hours, 11 minutes and 45 seconds elapsed.
Step_08b_G160_M1.o380466:0 hours, 12 minutes and 20 seconds elapsed.
Step_08b_G160_M2.o380467:0 hours, 13 minutes and 8 seconds elapsed.
Step_08b_G160_M2.o380468:0 hours, 33 minutes and 13 seconds elapsed.
Step_08b_G160_M2.o380469:0 hours, 23 minutes and 17 seconds elapsed.
Step_08b_G160_M2.o380470:0 hours, 11 minutes and 0 seconds elapsed.
Step_08b_G160_M2.o380471:0 hours, 19 minutes and 23 seconds elapsed.
Step_08b_G160_M2.o380472:0 hours, 26 minutes and 57 seconds elapsed.
Step_08b_G160_M2.o380473:0 hours, 19 minutes and 28 seconds elapsed.
Step_08b_G160_M2.o380474:0 hours, 19 minutes and 19 seconds elapsed.
Step_08b_G160_M3.o380475:0 hours, 12 minutes and 13 seconds elapsed.
Step_08b_G160_M3.o380476:0 hours, 33 minutes and 37 seconds elapsed.
Step_08b_G160_M3.o380477:0 hours, 23 minutes and 49 seconds elapsed.
Step_08b_G160_M3.o380478:0 hours, 10 minutes and 22 seconds elapsed.
Step_08b_G160_M3.o380479:0 hours, 19 minutes and 28 seconds elapsed.
Step_08b_G160_M3.o380480:0 hours, 27 minutes and 50 seconds elapsed.
Step_08b_G160_M3.o380481:0 hours, 19 minutes and 25 seconds elapsed.
Step_08b_G160_M3.o380482:0 hours, 19 minutes and 37 seconds elapsed.
Step_08b_G160_M4.o380483:0 hours, 12 minutes and 0 seconds elapsed.
Step_08b_G160_M4.o380484:0 hours, 16 minutes and 13 seconds elapsed.
Step_08b_G160_M4.o380485:0 hours, 12 minutes and 12 seconds elapsed.
Step_08b_G160_M4.o380486:0 hours, 9 minutes and 41 seconds elapsed.
Step_08b_G160_M4.o380487:0 hours, 9 minutes and 18 seconds elapsed.
Step_08b_G160_M4.o380488:0 hours, 13 minutes and 15 seconds elapsed.
Step_08b_G160_M4.o380489:0 hours, 18 minutes and 27 seconds elapsed.
Step_08b_G160_M4.o380490:0 hours, 9 minutes and 22 seconds elapsed.
Step_08b_G160_M5.o380491:0 hours, 32 minutes and 23 seconds elapsed.
Step_08b_G160_M5.o380492:0 hours, 29 minutes and 53 seconds elapsed.
Step_08b_G160_M5.o380493:0 hours, 21 minutes and 43 seconds elapsed.
Step_08b_G160_M5.o380494:0 hours, 11 minutes and 25 seconds elapsed.
Step_08b_G160_M5.o380495:0 hours, 32 minutes and 15 seconds elapsed.
Step_08b_G160_M5.o380496:0 hours, 25 minutes and 39 seconds elapsed.
Step_08b_G160_M5.o380497:0 hours, 40 minutes and 31 seconds elapsed.
Step_08b_G160_M5.o380498:0 hours, 16 minutes and 52 seconds elapsed.
Step_08b_G160_M6.o380499:0 hours, 15 minutes and 23 seconds elapsed.
Step_08b_G160_M6.o380500:0 hours, 36 minutes and 37 seconds elapsed.
Step_08b_G160_M6.o380501:0 hours, 27 minutes and 27 seconds elapsed.
Step_08b_G160_M6.o380502:0 hours, 12 minutes and 23 seconds elapsed.
Step_08b_G160_M6.o380503:0 hours, 11 minutes and 46 seconds elapsed.
Step_08b_G160_M6.o380504:0 hours, 16 minutes and 21 seconds elapsed.
Step_08b_G160_M6.o380505:0 hours, 11 minutes and 44 seconds elapsed.
Step_08b_G160_M6.o380506:0 hours, 11 minutes and 35 seconds elapsed.
09a_DiffExp_1_HTSeq
Step_09a_DiffExp_1a.o386742:2 minutes and 59 seconds elapsed.
Step_09a_DiffExp_1b.o386743:1 minutes and 6 seconds elapsed.
Step_09a_DiffExp_1c.o386744:1 minutes and 42 seconds elapsed.
09a_DiffExp_2_HTSeq
Step_09a_DiffExp_2a.o383324:1 minutes and 30 seconds elapsed.
Step_09a_DiffExp_2b.o383325:0 minutes and 56 seconds elapsed.
Step_09a_DiffExp_2c.o383326:3 minutes and 6 seconds elapsed.
09a_DiffExp_3_HTSeq
Step_09a_DiffExp_3a.o383327:3 minutes and 3 seconds elapsed.
Step_09a_DiffExp_3b.o383328:2 minutes and 3 seconds elapsed.
Step_09a_DiffExp_3c.o383329:3 minutes and 5 seconds elapsed.
09a_DiffExp_4_HTSeq
Step_09a_DiffExp_4a.o383332:1 minutes and 26 seconds elapsed.
Step_09a_DiffExp_4b.o383333:0 minutes and 49 seconds elapsed.
Step_09a_DiffExp_4c.o383334:2 minutes and 52 seconds elapsed.
09a_DiffExp_5_HTSeq
Step_09a_DiffExp_5a.o383345:1 minutes and 21 seconds elapsed.
Step_09a_DiffExp_5b.o383346:1 minutes and 34 seconds elapsed.
Step_09a_DiffExp_5c.o383347:3 minutes and 6 seconds elapsed.
09a_DiffExp_6_HTSeq
Step_09a_DiffExp_6a.o383366:1 minutes and 22 seconds elapsed.
Step_09a_DiffExp_6b.o383367:0 minutes and 49 seconds elapsed.
Step_09a_DiffExp_6c.o383368:1 minutes and 21 seconds elapsed.
09a_DiffExp_7_HTSeq
Step_09a_DiffExp_7a.o383384:3 minutes and 2 seconds elapsed.
Step_09a_DiffExp_7b.o383385:1 minutes and 54 seconds elapsed.
Step_09a_DiffExp_7c.o383386:1 minutes and 20 seconds elapsed.
09a_DiffExp_8_HTSeq
Step_09a_DiffExp_8a.o383391:3 minutes and 44 seconds elapsed.
Step_09a_DiffExp_8b.o383392:1 minutes and 55 seconds elapsed.
Step_09a_DiffExp_8c.o383393:1 minutes and 22 seconds elapsed.
09a_DiffExp_9_HTSeq
Step_09a_DiffExp_9a.o383397:2 minutes and 57 seconds elapsed.
Step_09a_DiffExp_9b.o383399:0 minutes and 44 seconds elapsed.
Step_09a_DiffExp_9c.o383400:2 minutes and 53 seconds elapsed.
09b_DiffExp_1_featureCounts
Step_09b_DiffExp_1a.o383403:1 minutes and 33 seconds elapsed.
Step_09b_DiffExp_1b.o383404:2 minutes and 53 seconds elapsed.
Step_09b_DiffExp_1c.o383405:1 minutes and 19 seconds elapsed.
09b_DiffExp_2_featureCounts
Step_09b_DiffExp_2a.o383406:1 minutes and 20 seconds elapsed.
Step_09b_DiffExp_2b.o383407:0 minutes and 49 seconds elapsed.
Step_09b_DiffExp_2c.o383408:2 minutes and 59 seconds elapsed.
09b_DiffExp_3_featureCounts
Step_09b_DiffExp_3a.o383409:1 minutes and 20 seconds elapsed.
Step_09b_DiffExp_3b.o383410:0 minutes and 46 seconds elapsed.
Step_09b_DiffExp_3c.o383411:1 minutes and 22 seconds elapsed.
09b_DiffExp_4_featureCounts
Step_09b_DiffExp_4a.o383414:2 minutes and 54 seconds elapsed.
Step_09b_DiffExp_4b.o383415:1 minutes and 43 seconds elapsed.
Step_09b_DiffExp_4c.o383416:3 minutes and 5 seconds elapsed.
09b_DiffExp_5_featureCounts
Step_09b_DiffExp_5a.o383436:3 minutes and 9 seconds elapsed.
Step_09b_DiffExp_5b.o383437:0 minutes and 54 seconds elapsed.
Step_09b_DiffExp_5c.o383438:1 minutes and 19 seconds elapsed.
09b_DiffExp_6_featureCounts
Step_09b_DiffExp_6a.o383456:2 minutes and 59 seconds elapsed.
Step_09b_DiffExp_6b.o383457:1 minutes and 48 seconds elapsed.
Step_09b_DiffExp_6c.o383458:3 minutes and 20 seconds elapsed.
09b_DiffExp_7_featureCounts
Step_09b_DiffExp_7a.o383461:3 minutes and 20 seconds elapsed.
Step_09b_DiffExp_7b.o383462:2 minutes and 54 seconds elapsed.
Step_09b_DiffExp_7c.o383463:3 minutes and 56 seconds elapsed.
09b_DiffExp_8_featureCounts
Step_09b_DiffExp_8a.o383464:1 minutes and 38 seconds elapsed.
Step_09b_DiffExp_8b.o383465:2 minutes and 35 seconds elapsed.
Step_09b_DiffExp_8c.o383466:1 minutes and 23 seconds elapsed.
09b_DiffExp_9_featureCounts
Step_09b_DiffExp_9a.o383469:2 minutes and 59 seconds elapsed.
Step_09b_DiffExp_9b.o383470:1 minutes and 50 seconds elapsed.
Step_09b_DiffExp_9c.o383471:1 minutes and 22 seconds elapsed.
09c_DiffExp_1_lncRNA_featureCounts
Step_09c_DiffExp_1d.o383473:0 minutes and 20 seconds elapsed.
Step_09c_DiffExp_1e.o383474:0 minutes and 12 seconds elapsed.
Step_09c_DiffExp_1f.o383475:0 minutes and 12 seconds elapsed.
Step_09c_DiffExp_1g.o383476:0 minutes and 17 seconds elapsed.
09c_DiffExp_2_lncRNA_featureCounts
09c_DiffExp_3_lncRNA_featureCounts
09c_DiffExp_4_lncRNA_featureCounts
Step_09c_DiffExp_4d.o390595:0 minutes and 31 seconds elapsed.
Step_09c_DiffExp_4e.o390596:0 minutes and 13 seconds elapsed.
Step_09c_DiffExp_4f.o390597:0 minutes and 20 seconds elapsed.
Step_09c_DiffExp_4g.o390598:0 minutes and 15 seconds elapsed.
09c_DiffExp_5_lncRNA_featureCounts
09c_DiffExp_6_lncRNA_featureCounts
09c_DiffExp_7_lncRNA_featureCounts
09c_DiffExp_8_lncRNA_featureCounts
09c_DiffExp_9_lncRNA_featureCounts
10_bamCorrelate
Step_10_bamCor_01.o383583:0 hours, 0 minutes and 17 seconds elapsed.
Step_10_bamCor_02.o383584:0 hours, 0 minutes and 13 seconds elapsed.
Step_10_bamCor_03.o383585:0 hours, 0 minutes and 29 seconds elapsed.
Step_10_bamCor_04.o383586:0 hours, 0 minutes and 28 seconds elapsed.
Step_10_bamCor_Full.o383582:0 hours, 0 minutes and 12 seconds elapsed.
11_UCSC_BigWig
13a_Pearson_Correlation_HTSeq
13b_Pearson_Correlation_featureCounts
#--------------------------------------------------------------
03_Run_Pipeline.sh run time:
0 hours, 0 minutes and 5 seconds elapsed.
#--------------------------------------------------------------