-----------------------
Start of variable list:
-----------------------
Sample_ID:
G160_M3
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/G160_Samples
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/G160_Samples/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Aug 30 13:47:43 EDT 2017
Running on node : scc-wd4
Current directory : /restricted/projectnb/waxmanlab/kkarri/G160_Samples/Scripts/03_Read_Length
Current job ID : 469010
Current job name : Step_03_G160_M3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/469010.1.w

Loading required modules...


List files in scratch directory:

total 2.2G
drwxr-xr-x   2 kkarri pulmseq 4.0K Aug 30 13:47 .
drwxrwxrwt. 14 root   root     68K Aug 30 13:47 ..
-rw-r-----   1 kkarri pulmseq 1.1G Aug 30 13:47 G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R1.fastq.gz
-rw-r-----   1 kkarri pulmseq 1.1G Aug 30 13:47 G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R1.fastq


Processing G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R2.fastq


Ending Read Length


List files in scratch

total 8.0G
drwxr-xr-x   2 kkarri pulmseq 4.0K Aug 30 13:48 .
drwxrwxrwt. 14 root   root     68K Aug 30 13:47 ..
-rw-r-----   1 kkarri pulmseq 4.0G Aug 30 13:47 G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R1.fastq
-rw-r-----   1 kkarri pulmseq 4.0G Aug 30 13:47 G160-M3-Index3_TTAGGC-_ACB0DPANXX_L004_001.R2.fastq
==========================================================
Finished on : Wed Aug 30 13:49:29 EDT 2017
0 hours, 1 minutes and 46 seconds elapsed.
==========================================================