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Attaching package: 'S4Vectors'

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Loading required package: Biobase
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Attaching package: 'matrixStats'

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Loading required package: BiocParallel

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Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
  cannot open file 'DiffExp_v2_GeneBody': No such file or directory
Execution halted
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
  cannot open file 'DiffExp_v2_GeneBody_F_Chromatin_Pellet_F_Cytoplasmic.txt': No such file or directory
Execution halted
Loading required package: grid
Loading required package: futile.logger
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
  cannot open file 'Down_Genes_DESeq_GeneBody_F_Cytoplasmic_G160_M4M44_F_Chromatin_Pellet_G160_M2M22.txt': No such file or directory
Execution halted
Loading required package: grid
Loading required package: futile.logger
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
  cannot open file 'Up_Genes_DESeq_GeneBody_F_Cytoplasmic_G160_M4M44_F_Chromatin_Pellet_G160_M2M22.txt': No such file or directory
Execution halted
cat: Count.Table.*.txt: No such file or directory
rm: cannot remove 'Count.Table.*.txt': No such file or directory
mv: cannot stat 'DiffExp_v2_GeneBody_F_Chromatin_Pellet_F_Cytoplasmic.txt': No such file or directory
cp: cannot stat '/scratch/8778502.1.linga/Input/DiffExp_v2_GeneBody_F_Cytoplasmic_G160_M4M44_F_Chromatin_Pellet_G160_M2M22.txt': No such file or directory
cp: cannot stat '/scratch/8778502.1.linga/Input/F_Cytoplasmic_G160_M4M44_vs_F_Chromatin_Pellet_G160_M2M22_DiffExp_v2_GeneBody_forSEGEXUpload*': No such file or directory
cp: cannot stat '/scratch/8778502.1.linga/Input/*_Genes*.txt': No such file or directory
cp: cannot stat '/scratch/8778502.1.linga/Input/*.png': No such file or directory
mv: cannot stat '*.png': No such file or directory