-----------------------
Start of variable list:
-----------------------
Sample_ID:
G166_M2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 22 19:58:05 EDT 2019
Running on node : scc-ka1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV/Scripts/03_Read_Length
Current job ID : 5524935
Current job name : Step_03_G166_M2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5524935.1.linga

Loading required modules...


List files in scratch directory:

total 2.4G
drwx------   2 kkarri waxmanlab 4.0K Apr 22 19:59 .
drwxrwxrwt. 65 root   root      124K Apr 22 19:58 ..
-rw-r-----   1 kkarri waxmanlab 1.2G Apr 22 19:59 G166_M2.R1.fastq.gz
-rw-r-----   1 kkarri waxmanlab 1.3G Apr 22 20:00 G166_M2.R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G166_M2.R1.fastq


Processing G166_M2.R2.fastq


Ending Read Length


List files in scratch

total 13G
drwx------   2 kkarri waxmanlab 4.0K Apr 22 20:02 .
drwxrwxrwt. 68 root   root      124K Apr 22 20:02 ..
-rw-r-----   1 kkarri waxmanlab 6.1G Apr 22 19:59 G166_M2.R1.fastq
-rw-r-----   1 kkarri waxmanlab 6.1G Apr 22 20:00 G166_M2.R2.fastq
==========================================================
Finished on : Mon Apr 22 20:05:03 EDT 2019
0 hours, 6 minutes and 58 seconds elapsed.
==========================================================