-----------------------
Start of variable list:
-----------------------
Sample_ID:
G166_M5
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 22 19:58:05 EDT 2019
Running on node : scc-ka5
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G166_PCA_ENV/Scripts/03_Read_Length
Current job ID : 5524937
Current job name : Step_03_G166_M5
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5524937.1.linga

Loading required modules...


List files in scratch directory:

total 1.8G
drwx------   2 kkarri waxmanlab 4.0K Apr 22 19:59 .
drwxrwxrwt. 79 root   root      128K Apr 22 19:58 ..
-rw-r-----   1 kkarri waxmanlab 903M Apr 22 19:58 G166_M5.R1.fastq.gz
-rw-r-----   1 kkarri waxmanlab 936M Apr 22 19:59 G166_M5.R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G166_M5.R1.fastq


Processing G166_M5.R2.fastq


Ending Read Length


List files in scratch

total 9.0G
drwx------   2 kkarri waxmanlab 4.0K Apr 22 20:01 .
drwxrwxrwt. 72 root   root      128K Apr 22 20:02 ..
-rw-r-----   1 kkarri waxmanlab 4.5G Apr 22 19:58 G166_M5.R1.fastq
-rw-r-----   1 kkarri waxmanlab 4.5G Apr 22 19:59 G166_M5.R2.fastq
==========================================================
Finished on : Mon Apr 22 20:03:19 EDT 2019
0 hours, 5 minutes and 14 seconds elapsed.
==========================================================