[bam_sort_core] merging from 19 files...

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	v1.4.6-p5

//========================== featureCounts setting ===========================\\
||                                                                            ||
||             Input files : 1 BAM file                                       ||
||                           P G166_M13_sorted.bam                            ||
||                                                                            ||
||             Output file : G166_M13_featureCounts.out                       ||
||             Annotations : exonic_only_gene_models_ncRNA_for_counting.g ... ||
||                                                                            ||
||                 Threads : 16                                               ||
||                   Level : meta-feature level                               ||
||              Paired-end : yes                                              ||
||         Strand specific : inversed                                         ||
||      Multimapping reads : not counted                                      ||
|| Multi-overlapping reads : not counted                                      ||
||       Read orientations : fr                                               ||
||                                                                            ||
||          Chimeric reads : counted                                          ||
||        Both ends mapped : not required                                     ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//

//================================= Running ==================================\\
||                                                                            ||
|| Load annotation file exonic_only_gene_models_ncRNA_for_counting.gtf ...    ||
||    Features : 210548                                                       ||
||    Meta-features : 37893                                                   ||
||    Chromosomes/contigs : 32                                                ||
||                                                                            ||
|| Process BAM file G166_M13_sorted.bam...                                    ||
||    Paired-end reads are included.                                          ||
||    Assign fragments (read pairs) to features...                            ||
||    Found reads that are not properly paired.                               ||
||    (missing mate or the mate is not the next read)                         ||
||    Below are the two reads that are not properly paired:                   ||
||       A00296:19:H75HLDSXX:4:1101:1018:22013   147   chr17   34179204   50  ||
||          50M   =   34179010   -244   N   #   NH:i:1                        ||
||       A00296:19:H75HLDSXX:4:1101:1018:23109   99   chr7   75029692   50    ||
||        50M   =   75029898   256   N   #   NH:i:1                           ||
||    5658347 reads have missing mates.                                       ||
||    Input was converted to a format accepted by featureCounts.              ||
||    Total fragments : 25290363                                              ||
||    Successfully assigned fragments : 6942838 (27.5%)                       ||
||    Running time : 7.42 minutes                                             ||
||                                                                            ||
||                         Read assignment finished.                          ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//