-----------------------
Start of variable list:
-----------------------
Sample_ID:
G170_M10
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Sep  4 10:11:19 EDT 2019
Running on node : scc-tm1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/03_Read_Length
Current job ID : 9138433
Current job name : Step_03_G170_M10
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/9138433.1.linga

Loading required modules...


List files in scratch directory:

total 4.0G
drwx------   2 kkarri waxmanlab 4.0K Sep  4 10:15 .
drwxrwxrwt. 15 root   root      4.0K Sep  4 10:11 ..
-rw-r--r--   1 kkarri waxmanlab 1.9G Sep  4 10:15 G170_M10_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 2.1G Sep  4 10:20 G170_M10_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G170_M10_R1.fastq


Processing G170_M10_R2.fastq


Ending Read Length


List files in scratch

total 20G
drwx------   2 kkarri waxmanlab 4.0K Sep  4 10:24 .
drwxrwxrwt. 15 root   root      4.0K Sep  4 10:11 ..
-rw-r--r--   1 kkarri waxmanlab 9.8G Sep  4 10:15 G170_M10_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 9.8G Sep  4 10:20 G170_M10_R2.fastq
==========================================================
Finished on : Wed Sep  4 10:25:25 EDT 2019
0 hours, 14 minutes and 6 seconds elapsed.
==========================================================