-----------------------
Start of variable list:
-----------------------
Sample_ID:
G170_M11
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Sep  4 10:11:19 EDT 2019
Running on node : scc-tm2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/03_Read_Length
Current job ID : 9138434
Current job name : Step_03_G170_M11
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/9138434.1.linga

Loading required modules...


List files in scratch directory:

total 4.7G
drwx------   2 kkarri waxmanlab 4.0K Sep  4 10:17 .
drwxrwxrwt. 13 root   root      4.0K Sep  4 10:11 ..
-rw-r--r--   1 kkarri waxmanlab 2.3G Sep  4 10:17 G170_M11_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 2.5G Sep  4 10:22 G170_M11_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G170_M11_R1.fastq


Processing G170_M11_R2.fastq


Ending Read Length


List files in scratch

total 23G
drwx------   2 kkarri waxmanlab 4.0K Sep  4 10:27 .
drwxrwxrwt. 13 root   root      4.0K Sep  4 10:11 ..
-rw-r--r--   1 kkarri waxmanlab  12G Sep  4 10:17 G170_M11_R1.fastq
-rw-r--r--   1 kkarri waxmanlab  12G Sep  4 10:22 G170_M11_R2.fastq
==========================================================
Finished on : Wed Sep  4 10:28:42 EDT 2019
0 hours, 17 minutes and 23 seconds elapsed.
==========================================================