[bam_sort_core] merging from 17 files...

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	v1.4.6-p5

//========================== featureCounts setting ===========================\\
||                                                                            ||
||             Input files : 1 BAM file                                       ||
||                           P G170_M15_sorted.bam                            ||
||                                                                            ||
||             Output file : G170_M15_featureCounts.out                       ||
||             Annotations : exonic_only_gene_models_ncRNA_for_counting.g ... ||
||                                                                            ||
||                 Threads : 16                                               ||
||                   Level : meta-feature level                               ||
||              Paired-end : yes                                              ||
||         Strand specific : inversed                                         ||
||      Multimapping reads : not counted                                      ||
|| Multi-overlapping reads : not counted                                      ||
||       Read orientations : fr                                               ||
||                                                                            ||
||          Chimeric reads : counted                                          ||
||        Both ends mapped : not required                                     ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//

//================================= Running ==================================\\
||                                                                            ||
|| Load annotation file exonic_only_gene_models_ncRNA_for_counting.gtf ...    ||
||    Features : 210548                                                       ||
||    Meta-features : 37893                                                   ||
||    Chromosomes/contigs : 32                                                ||
||                                                                            ||
|| Process BAM file G170_M15_sorted.bam...                                    ||
||    Paired-end reads are included.                                          ||
||    Assign fragments (read pairs) to features...                            ||
||    Found reads that are not properly paired.                               ||
||    (missing mate or the mate is not the next read)                         ||
||    Below are the two reads that are not properly paired:                   ||
||       K00124:462:H3HCGBBXX:2:1101:1610:35045   147   chrX   71262829   50  ||
||          22M618N128M   =   71262669   -928   N   #   NH:i:1                ||
||       K00124:462:H3HCGBBXX:2:1101:1610:42394   83   chr8   106868173   50  ||
||          150M   =   106867976   -347   N   #   NH:i:1                      ||
||    3873422 reads have missing mates.                                       ||
||    Input was converted to a format accepted by featureCounts.              ||
||    Total fragments : 13642354                                              ||
||    Successfully assigned fragments : 10972175 (80.4%)                      ||
||    Running time : 3.60 minutes                                             ||
||                                                                            ||
||                         Read assignment finished.                          ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//