-----------------------
Need shift 5 command (have more than 9 arguments):
-----------------------
-----------------------
Start of variable list:
-----------------------
SCRIPT_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/09c_DiffExp_8_lncRNA_featureCounts
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170
Dataset_Label:
G170
ANNOTATION_FILE_DIR:
/unprotected/projects/waxmanlab/routines/GTF_Files
ANNOTATION_FILE:
/unprotected/projects/waxmanlab/routines/GTF_Files/ncRNA_output_filtered_final_gene.txt
CONDITION_1_NAME:
F_Placebo_TD229
CONDITION_2_NAME:
F_CPA_1cycle_TD229
Lengths_DIR:
/unprotected/projects/waxmanlab/routines/GTF_Files/lengths
GENE_LENGTHS_FILE:
exonic_only_gene_models_ncRNA_for_counting_lengths.txt
COUNT_DIR:
LncRNA_Exonic_Only_GTF
OUTPUT_PREFIX:
DiffExp_v2_LncRNA_Exonic_Only
DiffExp_Index:
DiffExp_8f
COL_SUFFIX:
LncRNA_Exonic_Only
COUNT_PROGRAM:
featureCounts
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Sep 16 11:07:37 EDT 2019
Running on node : scc-tm1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G170/Scripts/09c_DiffExp_8_lncRNA_featureCounts
Current job ID : 9374033
Current job name : Step_09c_DiffExp_8f
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/9374033.1.linga

Loading required modules...

------------------------------------------
Sample_DIR:
G170_M20
Sample_ID:
G170_M20
Description:
F_Placebo1_TD229
M_Num:
M20
Copy Condition_1 sample count files to Condition_1 folder
Copy Condition_1 sample count summary files to Condition_1 folder
Sample_DIR:
G170_M21
Sample_ID:
G170_M21
Description:
F_Placebo2_TD229
M_Num:
M21
Copy Condition_1 sample count files to Condition_1 folder
Copy Condition_1 sample count summary files to Condition_1 folder
M_Num_Cond1_List:
M20M21
------------------------------------------
------------------------------------------
Sample_DIR:
G170_M28
Sample_ID:
G170_M28
Description:
F_CPA_1_cycle9_TD229
M_Num:
M28
Copy Condition_2 sample count files to Condition_2 folder
Copy Condition_2 sample count summary files to Condition_2 folder
Sample_DIR:
G170_M29
Sample_ID:
G170_M29
Description:
F_CPA_1_cycle10_TD229
M_Num:
M29
Copy Condition_2 sample count files to Condition_2 folder
Copy Condition_2 sample count summary files to Condition_2 folder
M_Num_Cond2_List:
M28M29
------------------------------------------
==========================================================

Number of replicates in each condition:

NUM_REP_CONDITION1: 2
NUM_REP_CONDITION1: 2
==========================================================

Renaming input count files

number of mapped reads (feature count summary)
Status	G170_M28_sorted.bam
Assigned	10683924
Unassigned_Ambiguity	4917
Unassigned_MultiMapping	0
Unassigned_NoFeatures	2701253
Unassigned_Unmapped	0
Unassigned_MappingQuality	0
Unassigned_FragmentLength	0
Unassigned_Chimera	0
Unassigned_Secondary	0
Unassigned_Nonjunction	0
Unassigned_Duplicate	0
Status	G170_M29_sorted.bam
Assigned	10325536
Unassigned_Ambiguity	4506
Unassigned_MultiMapping	0
Unassigned_NoFeatures	2619164
Unassigned_Unmapped	0
Unassigned_MappingQuality	0
Unassigned_FragmentLength	0
Unassigned_Chimera	0
Unassigned_Secondary	0
Unassigned_Nonjunction	0
Unassigned_Duplicate	0
Status	G170_M20_sorted.bam
Assigned	10987636
Unassigned_Ambiguity	3900
Unassigned_MultiMapping	0
Unassigned_NoFeatures	2422628
Unassigned_Unmapped	0
Unassigned_MappingQuality	0
Unassigned_FragmentLength	0
Unassigned_Chimera	0
Unassigned_Secondary	0
Unassigned_Nonjunction	0
Unassigned_Duplicate	0
Status	G170_M21_sorted.bam
Assigned	10898050
Unassigned_Ambiguity	3794
Unassigned_MultiMapping	0
Unassigned_NoFeatures	2909948
Unassigned_Unmapped	0
Unassigned_MappingQuality	0
Unassigned_FragmentLength	0
Unassigned_Chimera	0
Unassigned_Secondary	0
Unassigned_Nonjunction	0
Unassigned_Duplicate	0
==========================================================

List files in Input

-rw-r--r-- 1 kkarri waxmanlab 715284 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2290.out
-rw-r--r-- 1 kkarri waxmanlab    297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2290.summary
-rw-r--r-- 1 kkarri waxmanlab 715211 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2291.out
-rw-r--r-- 1 kkarri waxmanlab    297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2291.summary
-rw-r--r-- 1 kkarri waxmanlab 714197 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2290.out
-rw-r--r-- 1 kkarri waxmanlab    297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2290.summary
-rw-r--r-- 1 kkarri waxmanlab 714768 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2291.out
-rw-r--r-- 1 kkarri waxmanlab    297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2291.summary
-rw-r--r-- 1 kkarri waxmanlab 794757 Sep 16 11:07 /scratch/9374033.1.linga/Input/exonic_only_gene_models_ncRNA_for_counting_lengths.txt

/scratch/9374033.1.linga/Input/F_CPA_1cycle_TD229:
total 8
drwxr-xr-x 2 kkarri waxmanlab 4096 Sep 16 11:07 .
drwxr-xr-x 4 kkarri waxmanlab 4096 Sep 16 11:07 ..

/scratch/9374033.1.linga/Input/F_Placebo_TD229:
total 8
drwxr-xr-x 2 kkarri waxmanlab 4096 Sep 16 11:07 .
drwxr-xr-x 4 kkarri waxmanlab 4096 Sep 16 11:07 ..
==========================================================

Starting to run my commands

Printing Rscript command:
Rscript differentialAnalysis.R F_Placebo_TD229 F_CPA_1cycle_TD229 2 2 /unprotected/projects/waxmanlab/routines/GTF_Files/ncRNA_output_filtered_final_gene.txt /scratch/9374033.1.linga/Input DiffExp_v2_LncRNA_Exonic_Only exonic_only_gene_models_ncRNA_for_counting_lengths.txt
[1] "Arguments for differentialAnalysisDESeq.R:"
[1] "F_Placebo_TD229"
[1] "F_CPA_1cycle_TD229"
[1] 2
[1] 2
[1] "/unprotected/projects/waxmanlab/routines/GTF_Files/ncRNA_output_filtered_final_gene.txt"
[1] "/scratch/9374033.1.linga/Input"
[1] "DiffExp_v2_LncRNA_Exonic_Only"
[1] "exonic_only_gene_models_ncRNA_for_counting_lengths.txt"
[1] 15558    23
[1] 15558    48
[1] "chr1" "chr2" "chr3" "chr4" "chr5" "chr6" "chr7" "chr8" "chr9"
 [1] "chr10" "chr11" "chr12" "chr13" "chr14" "chr15" "chr16" "chr17" "chr18"
[10] "chr19"
[1] "chrX" "chrY"
[1] "output file is in: /scratch/9374033.1.linga/Input/DiffExp_v2_LncRNA_Exonic_Only_F_Placebo_TD229_F_CPA_1cycle_TD229.txt"
==========================================================

Create SEGEX formatted file:

Printing Rscript command:
Rscript formatForSegex_ver3.R  DiffExp_v2_LncRNA_Exonic_Only_F_Placebo_TD229_F_CPA_1cycle_TD229.txt F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload 1 LncRNA_Exonic_Only
==========================================================
Comparison_Info:
F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21
#----------------------------------------------------------------------------------
Running Diff_Genes.R
#----------------------------------------------------------------------------------
Printing Rscript command:
Rscript Diff_Genes.R F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_DESeq.txt 2 0.05 DESeq LncRNA_Exonic_Only'_'F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21
[1] "Print arguments:"
[1] "-----------------"
[1] "Differential expression_Output:"
[1] "F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_DESeq.txt"
[1] "fold_change_cutoff:"
[1] "2"
[1] "padj_cutoff:"
[1] "0.05"
[1] "postfix:"
[1] "DESeq"
[1] "count_method:"
[1] "LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21"
[1] "-----------------"
[1] "Differential Gene Counts"
[1] "Number of significant differential genes with positive fold change (Up Genes):"
[1] 18  7
[1] "Number of significant differential genes with negative fold change (Down Genes):"
[1] 2 7
[1] "Check out Up_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt!"
[1] "Check out Down_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt!"
Rscript Diff_Genes.R F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_EdgeR.txt 2 0.05 EdgeR LncRNA_Exonic_Only'_'F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21
[1] "Print arguments:"
[1] "-----------------"
[1] "Differential expression_Output:"
[1] "F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_EdgeR.txt"
[1] "fold_change_cutoff:"
[1] "2"
[1] "padj_cutoff:"
[1] "0.05"
[1] "postfix:"
[1] "EdgeR"
[1] "count_method:"
[1] "LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21"
[1] "-----------------"
[1] "Differential Gene Counts"
[1] "Number of significant differential genes with positive fold change (Up Genes):"
[1] 71  7
[1] "Number of significant differential genes with negative fold change (Down Genes):"
[1] 10  7
[1] "Check out Up_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt!"
[1] "Check out Down_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt!"
#----------------------------------------------------------------------------------
Running Venn_Diff_Genes.R
#----------------------------------------------------------------------------------
Printing Rscript command:
#----------------------------------------------------------------------------------
Rscript Venn_Diff_Genes.R Down_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt Down_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt LncRNA_Exonic_Only_Counting DiffExp_8f
[1] "Print arguments:"
[1] "-----------------"
[1] "File1:"
[1] "Down_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt"
[1] "File2:"
[1] "Down_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt"
[1] "Subtitle:"
[1] "LncRNA_Exonic_Only_Counting"
[1] "DiffExp_Index:"
[1] "DiffExp_8f"
[1] "-----------------"
[1] "Down.DESeq.Exonic_Only.HTSeq"
[1] "Down.EdgeR.Exonic_Only.HTSeq"
null device 
          1 
[1] "Removing VennDiagram*.log files"
[1] "Check out Venn diagram and Count.Table!"
#----------------------------------------------------------------------------------
Rscript Venn_Diff_Genes.R Up_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt Up_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt LncRNA_Exonic_Only_Counting DiffExp_8f
[1] "Print arguments:"
[1] "-----------------"
[1] "File1:"
[1] "Up_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt"
[1] "File2:"
[1] "Up_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt"
[1] "Subtitle:"
[1] "LncRNA_Exonic_Only_Counting"
[1] "DiffExp_Index:"
[1] "DiffExp_8f"
[1] "-----------------"
[1] "Up.DESeq.Exonic_Only.HTSeq"
[1] "Up.EdgeR.Exonic_Only.HTSeq"
null device 
          1 
[1] "Removing VennDiagram*.log files"
[1] "Check out Venn diagram and Count.Table!"
#----------------------------------------------------------------------------------
#----------------------------------------------------------------------------------
Merging Count.Table(s) into one text file
#----------------------------------------------------------------------------------
Comparison_Info:
F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21
#----------------------------------------------------------------------------------
==========================================================
Renaming the Differential_Expression_File
==========================================================

List files in Input

-rw-r--r-- 1 kkarri waxmanlab     320 Sep 16 11:08 /scratch/9374033.1.linga/Input/DiffExp_8f_Venn_Tables_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rw-r--r-- 1 kkarri waxmanlab 3831852 Sep 16 11:08 /scratch/9374033.1.linga/Input/DiffExp_v2_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rwxr-xr-x 1 kkarri waxmanlab    7706 Sep 16 11:07 /scratch/9374033.1.linga/Input/Diff_Genes.R
-rw-r--r-- 1 kkarri waxmanlab     376 Sep 16 11:08 /scratch/9374033.1.linga/Input/Down_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rw-r--r-- 1 kkarri waxmanlab    1005 Sep 16 11:08 /scratch/9374033.1.linga/Input/Down_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rw-r--r-- 1 kkarri waxmanlab  715284 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2290.out
-rw-r--r-- 1 kkarri waxmanlab     297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2290.summary
-rw-r--r-- 1 kkarri waxmanlab  715211 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2291.out
-rw-r--r-- 1 kkarri waxmanlab     297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD2291.summary
-rw-r--r-- 1 kkarri waxmanlab 2012525 Sep 16 11:08 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_DESeq.txt
-rw-r--r-- 1 kkarri waxmanlab 1950293 Sep 16 11:08 /scratch/9374033.1.linga/Input/F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_EdgeR.txt
-rw-r--r-- 1 kkarri waxmanlab  714197 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2290.out
-rw-r--r-- 1 kkarri waxmanlab     297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2290.summary
-rw-r--r-- 1 kkarri waxmanlab  714768 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2291.out
-rw-r--r-- 1 kkarri waxmanlab     297 Sep 16 11:07 /scratch/9374033.1.linga/Input/F_Placebo_TD2291.summary
-rw-r--r-- 1 kkarri waxmanlab    2021 Sep 16 11:08 /scratch/9374033.1.linga/Input/Up_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rw-r--r-- 1 kkarri waxmanlab    7090 Sep 16 11:08 /scratch/9374033.1.linga/Input/Up_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21.txt
-rwxr-xr-x 1 kkarri waxmanlab    9993 Sep 16 11:07 /scratch/9374033.1.linga/Input/Venn_Diff_Genes.R
-rw-r--r-- 1 kkarri waxmanlab   38045 Sep 16 11:08 /scratch/9374033.1.linga/Input/Venn_Down.DESeq.Exonic_Only.HTSeq.Down.EdgeR.Exonic_Only.HTSeq.png
-rw-r--r-- 1 kkarri waxmanlab   37579 Sep 16 11:08 /scratch/9374033.1.linga/Input/Venn_Up.DESeq.Exonic_Only.HTSeq.Up.EdgeR.Exonic_Only.HTSeq.png
-rw-r--r-- 1 kkarri waxmanlab  794757 Sep 16 11:07 /scratch/9374033.1.linga/Input/exonic_only_gene_models_ncRNA_for_counting_lengths.txt
-rwxr-xr-x 1 kkarri waxmanlab    4968 Sep 16 11:07 /scratch/9374033.1.linga/Input/formatForSegex_ver3.R

/scratch/9374033.1.linga/Input/F_CPA_1cycle_TD229:
total 8
drwxr-xr-x 2 kkarri waxmanlab 4096 Sep 16 11:07 .
drwxr-xr-x 4 kkarri waxmanlab 4096 Sep 16 11:08 ..

/scratch/9374033.1.linga/Input/F_Placebo_TD229:
total 8
drwxr-xr-x 2 kkarri waxmanlab 4096 Sep 16 11:07 .
drwxr-xr-x 4 kkarri waxmanlab 4096 Sep 16 11:08 ..
==========================================================

List files in scratch

total 3.4M
drwx------   3 kkarri waxmanlab 4.0K Sep 16 11:08 .
drwxrwxrwt. 14 root   root      4.0K Sep 16 11:07 ..
-rw-r--r--   1 kkarri waxmanlab  103 Sep 16 11:07 Condition_1.txt
-rw-r--r--   1 kkarri waxmanlab  112 Sep 16 11:07 Condition_2.txt
drwxr-xr-x   4 kkarri waxmanlab 4.0K Sep 16 11:08 Input
-rwxr-xr-x   1 kkarri waxmanlab  13K Sep 16 11:07 differentialAnalysis.R
-rw-r--r--   1 kkarri waxmanlab 3.3M Sep 16 11:07 ncRNA_output_filtered_final_gene.txt

==========================================================
Re-naming files in OUTPUT_DIR
Need to append the COUNT_PROGRAM name to all output files

List files in OUTPUT_DIR

total 13M
drwxr-xr-x 2 kkarri waxmanlab 4.0K Sep 16 11:02 .
drwxr-xr-x 8 kkarri waxmanlab 4.0K Sep 16 11:02 ..
-rw-r--r-- 1 kkarri waxmanlab  320 Sep 16 11:02 DiffExp_8f_Venn_Tables_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 3.7M Sep 16 11:02 DiffExp_v2_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab  376 Sep 16 11:02 Down_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 1005 Sep 16 11:02 Down_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 2.0M Sep 16 11:02 F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_DESeq_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 1.9M Sep 16 11:02 F_CPA_1cycle_TD229_G170_M28M29_vs_F_Placebo_TD229_G170_M20M21_DiffExp_v2_LncRNA_Exonic_Only_forSEGEXUpload_EdgeR_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 2.0K Sep 16 11:02 Up_Genes_DESeq_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab 7.0K Sep 16 11:02 Up_Genes_EdgeR_LncRNA_Exonic_Only_F_CPA_1cycle_TD229_G170_M28M29_F_Placebo_TD229_G170_M20M21_featureCounts.txt
-rw-r--r-- 1 kkarri waxmanlab  38K Sep 16 11:02 Venn_Down.DESeq.Exonic_Only.HTSeq.Down.EdgeR.Exonic_Only.HTSeq_featureCounts.png
-rw-r--r-- 1 kkarri waxmanlab  37K Sep 16 11:02 Venn_Up.DESeq.Exonic_Only.HTSeq.Up.EdgeR.Exonic_Only.HTSeq_featureCounts.png
==========================================================
==========================================================
Finished on : Mon Sep 16 11:08:11 EDT 2019
0 minutes and 34 seconds elapsed.
==========================================================
