========================================================== Starting on : Tue Nov 5 14:55:50 EST 2019 Running on node : scc-ka1 Current job ID : 318800 Current job name : TCPO_10X_prmRNA_transcript Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' 2019-11-05 14:56:06 [jobmngr] WARNING: configured to use 226GB of local memory, but only 212.9GB is currently available. Serving UI at http://scc-ka1:35443?auth=YWnBfVrivjjjaBylqqEiXHFMo8cHbpBNS2VJmkKpte4 Running preflight checks (please wait)... 2019-11-05 14:56:10 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-11-05 14:56:11 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-11-05 14:56:59 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_ensembl_usethis) on scc-ka1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-11-05 14:57:15 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-11-05 14:57:15 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-11-05 14:57:16 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-11-05 14:57:17 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-11-05 14:57:17 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-11-05 14:57:18 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-11-05 14:57:20 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-11-05 14:57:21 [runtime] (progress) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-11-05 14:57:21 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-11-05 14:58:53 [runtime] (progress) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-11-05 15:05:18 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0 chunks_running 2019-11-05 15:11:18 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0 chunks_running 2019-11-05 15:17:21 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0 chunks_running 2019-11-05 15:23:22 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0 chunks_running 2019-11-05 15:23:32 [runtime] (progress) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-11-05 15:25:48 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-11-05 15:25:49 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-11-05 15:25:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-11-05 15:32:14 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0 chunks_running 2019-11-05 15:38:14 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0 chunks_running 2019-11-05 15:42:44 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-11-05 15:42:45 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-05 15:42:45 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-11-05 15:42:45 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-05 15:42:46 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-11-05 15:42:56 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-05 15:42:58 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-11-05 15:42:58 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main 2019-11-05 15:43:00 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main 2019-11-05 15:43:01 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main 2019-11-05 15:43:02 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-05 15:43:03 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-11-05 15:43:28 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-05 15:49:12 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed) 2019-11-05 15:51:23 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-05 15:51:24 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-11-05 15:51:26 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-05 15:51:27 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-05 15:51:27 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-11-05 15:51:35 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-05 15:51:41 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-11-05 15:51:42 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-11-05 15:51:44 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-11-05 15:51:46 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-11-05 15:51:46 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-11-05 15:51:47 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-11-05 15:51:48 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-11-05 15:51:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-11-05 15:51:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-11-05 15:51:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-11-05 15:51:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-11-05 15:51:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-11-05 15:51:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-11-05 15:51:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-11-05 15:51:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-11-05 15:51:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-11-05 15:51:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-11-05 15:51:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-11-05 15:51:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-11-05 15:51:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-11-05 15:51:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-11-05 15:51:57 [runtime] (run:local) 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ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-11-06 02:26:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-11-06 02:26:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-11-06 02:26:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-11-06 02:26:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-11-06 02:26:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-11-06 02:26:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-11-06 02:26:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-11-06 02:26:51 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-11-06 02:26:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-11-06 02:26:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-11-06 02:26:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-11-06 02:26:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-11-06 02:26:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-11-06 02:26:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-11-06 02:26:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-11-06 02:26:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-11-06 02:26:53 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk52.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk53.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk54.main 2019-11-06 02:26:54 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk55.main 2019-11-06 02:26:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk56.main 2019-11-06 02:26:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk57.main 2019-11-06 02:26:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk58.main 2019-11-06 02:26:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk59.main 2019-11-06 02:26:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk60.main 2019-11-06 02:26:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk61.main 2019-11-06 02:26:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk62.main 2019-11-06 02:26:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk63.main 2019-11-06 02:26:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk64.main 2019-11-06 02:26:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk65.main 2019-11-06 02:26:57 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk66.main 2019-11-06 02:26:57 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-11-06 02:26:59 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-06 02:27:00 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-11-06 02:32:23 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (2/67 completed) 2019-11-06 02:37:31 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (7/67 completed) 2019-11-06 02:42:49 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (11/67 completed) 2019-11-06 02:48:34 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (16/67 completed) 2019-11-06 02:53:48 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (21/67 completed) 2019-11-06 02:59:00 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (25/67 completed) 2019-11-06 03:04:05 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (29/67 completed) 2019-11-06 03:09:49 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (36/67 completed) 2019-11-06 03:15:27 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (43/67 completed) 2019-11-06 03:20:30 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (50/67 completed) 2019-11-06 03:25:35 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (56/67 completed) 2019-11-06 03:30:36 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (60/67 completed) 2019-11-06 03:30:56 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0 split_running 2019-11-06 03:30:57 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-06 03:30:57 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-11-06 03:31:54 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-06 03:31:54 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-06 03:31:55 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-11-06 03:31:56 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-11-06 03:31:56 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-11-06 03:31:56 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-06 03:31:56 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-11-06 03:31:57 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-11-06 03:31:57 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-11-06 03:31:59 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-06 03:31:59 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-11-06 03:32:00 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-06 03:32:00 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-11-06 03:32:03 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-06 03:34:18 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-06 03:34:19 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-11-06 03:34:24 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-06 03:34:25 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-11-06 03:34:26 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-11-06 03:34:30 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-11-06 03:34:32 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-06 03:34:32 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-11-06 03:34:32 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-06 03:34:33 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-11-06 03:34:33 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-06 03:34:33 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-11-06 03:34:33 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-06 03:34:34 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-11-06 03:34:35 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-11-06 03:34:36 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-11-06 03:34:38 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-06 03:34:40 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-11-06 03:34:41 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-11-06 03:34:41 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-11-06 03:34:41 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-11-06 03:34:42 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-11-06 03:34:42 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-11-06 03:34:43 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-11-06 03:34:43 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-11-06 03:34:43 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-11-06 03:34:44 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-06 03:34:45 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-11-06 03:34:45 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk1.main 2019-11-06 03:34:45 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-06 03:34:46 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-11-06 03:34:46 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-06 03:34:47 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-11-06 03:35:14 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-06 03:35:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-11-06 03:35:24 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-06 03:35:24 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-11-06 03:35:24 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-06 03:37:08 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-06 03:37:09 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-06 03:37:09 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-11-06 03:37:14 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-06 03:37:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-11-06 03:37:18 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-06 03:37:18 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-11-06 03:37:48 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-06 03:37:48 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-11-06 03:37:56 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-06 03:38:58 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-06 03:38:59 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-11-06 03:38:59 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-11-06 03:39:05 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-11-06 03:39:06 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-06 03:39:07 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-11-06 03:39:11 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-06 03:39:11 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-11-06 03:39:12 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-11-06 03:39:12 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-11-06 03:39:12 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-11-06 03:39:13 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-11-06 03:39:13 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-11-06 03:39:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-11-06 03:39:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-11-06 03:39:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-11-06 03:39:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-11-06 03:39:35 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-06 03:39:36 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-11-06 03:40:39 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 join_running 2019-11-06 03:43:36 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-06 03:43:46 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-11-06 03:44:02 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-06 03:44:02 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-11-06 03:44:09 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-06 03:44:09 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-11-06 03:44:09 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk1.main 2019-11-06 03:44:11 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk2.main 2019-11-06 03:44:21 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0 chunks running (4/10 completed) 2019-11-06 03:49:36 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0 chunks running (8/10 completed) 2019-11-06 03:50:15 [runtime] (update) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0 chunks running (0/3 completed) 2019-11-06 03:53:43 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-06 03:53:43 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-11-06 03:53:57 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-06 03:53:59 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-06 03:53:59 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-11-06 03:54:02 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-06 03:54:02 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-11-06 03:54:04 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-06 03:54:04 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-11-06 03:54:13 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-06 03:54:14 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-06 03:54:14 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-11-06 03:54:18 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-06 03:54:19 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-11-06 03:54:21 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-06 03:54:21 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-11-06 03:54:23 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-06 03:54:24 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-11-06 03:54:30 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-06 03:54:40 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-06 03:54:44 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-11-06 03:54:45 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-11-06 03:54:51 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-11-06 03:54:51 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-11-06 03:54:51 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-11-06 03:54:51 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-11-06 03:54:51 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-11-06 03:54:52 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-11-06 03:54:52 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-11-06 03:54:53 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-11-06 03:54:53 [runtime] (disabled) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-11-06 03:55:44 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-11-06 03:55:46 [runtime] (ready) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-06 03:55:47 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-11-06 03:55:50 [runtime] (split_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-06 03:55:50 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-11-06 03:58:15 [runtime] (chunks_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-06 03:58:15 [runtime] (run:local) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-11-06 03:58:22 [runtime] (join_complete) ID.10X_TCPO_premRNA_Transcript.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO_premRNA_Transcript/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-11-06 03:58:33 Shutting down. Saving pipestance info to "10X_TCPO_premRNA_Transcript/10X_TCPO_premRNA_Transcript.mri.tgz" Finished .............. Wed Nov 6 04:00:19 EST 2019