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Starting on       : Mon Nov  4 15:25:12 EST 2019
Running on node   : scc-kb8
Current job ID    : 302556
Current job name  : bcl2fastq_G172
Task index number : 
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Copy
/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin
cellranger mkfastq (3.1.0)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------

Martian Runtime - '3.1.0-v3.2.3'
2019-11-04 15:25:34 [jobmngr] WARNING: configured to use 226GB of local memory, but only 82.8GB is currently available.
Serving UI at http://scc-kb8:46645?auth=AlHI9Ke4UsU1o_JNH7og1Ns1LA5LRqLasnw1qM4pMa4

Running preflight checks (please wait)...
Checking run folder...
Checking RunInfo.xml...
Checking system environment...
Emitting run information...
Checking read specification...
Checking samplesheet specs...
Checking for dual index flowcell...
2019-11-04 15:25:41 [runtime] (ready)           ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.PREPARE_SAMPLESHEET
2019-11-04 15:25:41 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.PREPARE_SAMPLESHEET.fork0.chnk0.main
2019-11-04 15:25:45 [runtime] (chunks_complete) ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.PREPARE_SAMPLESHEET
2019-11-04 15:25:45 [runtime] (ready)           ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET
2019-11-04 15:25:46 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0.split
2019-11-04 15:25:48 [runtime] (split_complete)  ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET
2019-11-04 15:25:48 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0.chnk0.main
2019-11-04 15:31:51 [runtime] (update)          ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0 chunks_running
2019-11-04 15:37:52 [runtime] (update)          ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0 chunks_running
2019-11-04 15:43:59 [runtime] (update)          ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0 chunks_running
2019-11-04 15:49:55 [runtime] (update)          ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0 chunks_running
2019-11-04 15:53:52 [runtime] (chunks_complete) ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET
2019-11-04 15:53:52 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET.fork0.join
2019-11-04 15:53:56 [runtime] (join_complete)   ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.BCL2FASTQ_WITH_SAMPLESHEET
2019-11-04 15:53:57 [runtime] (ready)           ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MAKE_QC_SUMMARY
2019-11-04 15:53:57 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MAKE_QC_SUMMARY.fork0.split
2019-11-04 15:54:01 [runtime] (split_complete)  ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MAKE_QC_SUMMARY
2019-11-04 15:54:01 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MAKE_QC_SUMMARY.fork0.join
2019-11-04 15:54:04 [runtime] (join_complete)   ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MAKE_QC_SUMMARY
2019-11-04 15:54:06 [runtime] (ready)           ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE
2019-11-04 15:54:06 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.split
2019-11-04 15:54:09 [runtime] (split_complete)  ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE
2019-11-04 15:54:09 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.chnk0.main
2019-11-04 15:54:09 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.chnk1.main
2019-11-04 15:54:10 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.chnk2.main
2019-11-04 15:54:10 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.chnk3.main
2019-11-04 15:57:37 [runtime] (chunks_complete) ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE
2019-11-04 15:57:37 [runtime] (run:local)       ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE.fork0.join
2019-11-04 15:57:49 [runtime] (join_complete)   ID.G172.MAKE_FASTQS_CS.MAKE_FASTQS.MERGE_FASTQS_BY_LANE_SAMPLE

Outputs:
- Run QC metrics:        null
- FASTQ output folder:   /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/G172/outs/fastq_path
- Interop output folder: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/G172/outs/interop_path
- Input samplesheet:     /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/G172/outs/input_samplesheet.csv

Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2019-11-04 15:57:57 Shutting down.
Saving pipestance info to "G172/G172.mri.tgz"
Finished  .............. Mon Nov  4 15:58:06 EST 2019