[
    {
        "name": "SC_RNA_COUNTER_CS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "bamtofastq"
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SC_RNA_COUNTER.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "valexp": "CLOUPE_PREPROCESS.output_for_cloupe",
                            "mode": "reference",
                            "output": "output_for_cloupe",
                            "sweep": false,
                            "sweepRootId": "cloupe",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/join-u9daea78ef1/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam.bai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pipestance_type",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggregation_csv",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "gem_group_index_json",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/cloupe/cloupe_preprocess"
    },
    {
        "name": "EXPAND_SAMPLE_DEF",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "bamtofastq"
                                    ]
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/expand_sample_def"
    },
    {
        "name": "SC_RNA_COUNTER",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_preflight_local",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "disable_preflight_local",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "EXPAND_SAMPLE_DEF.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_csv",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "fastq_chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "fastq_chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SUMMARIZE_REPORTS.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "_BASIC_SC_RNA_COUNTER.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u9daea78edd/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "read_fastqs",
                            "type": "fastq",
                            "valexp": "_BASIC_SC_RNA_COUNTER.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read_fastqs",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk46-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk47-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk48-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk49-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk50-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk51-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk52-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk53-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk54-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk55-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk56-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk57-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk58-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk59-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk60-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk61-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk62-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk63-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk64-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk65-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk66-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk67-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk68-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk69-u9daea75c85/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk70-u9daea75c85/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk71-u9daea75c85/files/read1s.fastq"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_correction_csv",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u9daea77c3f/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "_CRISPR_ANALYZER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CELLRANGER_PREFLIGHT",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CELLRANGER_PREFLIGHT_LOCAL",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT_LOCAL",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CHECK_BARCODES_COMPATIBILITY",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "self.num_reads_to_check_barcode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "self.barcode_compatibility_cutoff",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/check_barcodes_compatibility"
    },
    {
        "name": "CHEMISTRY_DETECTOR",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "DETECT_CHEMISTRY.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-u9daea754d0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "DETECT_CHEMISTRY.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "valexp": "DETECT_CHEMISTRY.report",
                            "mode": "reference",
                            "output": "report",
                            "sweep": false,
                            "sweepRootId": "report",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-u9daea754d0/files/report.txt",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "DETECT_CHEMISTRY.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "DETECT_CHEMISTRY",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "progress",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "self.vdj_reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name_spec",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/chemistry_detector/detect_chemistry"
    },
    {
        "name": "DISABLE_FEATURE_STAGES",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/disable_feature_stages"
    },
    {
        "name": "SC_RNA_ANALYZER",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aggr_library_info",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.cloupe_matrix_h5",
                            "mode": "reference",
                            "output": "cloupe_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "cloupe_matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/cloupe_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_ANALYSIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/analyzer_preflight"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5_list",
                            "type": "h5",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_h5_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u9daea78c40/files/pca_h5.h5",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pca_csv_list",
                            "type": "path",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_csv_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u9daea78c40/files/pca_csv",
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction_output"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "valexp": "RUN_KMEANS.kmeans_h5",
                            "mode": "reference",
                            "output": "kmeans_h5",
                            "sweep": false,
                            "sweepRootId": "kmeans_h5",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-u9daea78c6e/files/kmeans_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "valexp": "RUN_KMEANS.kmeans_csv",
                            "mode": "reference",
                            "output": "kmeans_csv",
                            "sweep": false,
                            "sweepRootId": "kmeans_csv",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-u9daea78c6e/files/kmeans_csv",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_h5",
                            "type": "h5",
                            "valexp": "MERGE_CLUSTERS.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "graphclust_h5",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-u9daea78c9e/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_csv",
                            "type": "path",
                            "valexp": "MERGE_CLUSTERS.clusters_csv",
                            "mode": "reference",
                            "output": "clusters_csv",
                            "sweep": false,
                            "sweepRootId": "graphclust_csv",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-u9daea78c9e/files/clusters_csv",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/combine_clustering"
    },
    {
        "name": "CORRECT_CHEMISTRY_BATCH",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.dimred_matrix",
                            "mode": "reference",
                            "output": "dimred_matrix",
                            "sweep": false,
                            "sweepRootId": "dimred_matrix",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.matrix_barcode_feature_info",
                            "mode": "reference",
                            "output": "matrix_barcode_feature_info",
                            "sweep": false,
                            "sweepRootId": "matrix_barcode_feature_info",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/correct_chemistry_batch"
    },
    {
        "name": "MERGE_CLUSTERS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clusters_h5",
                            "type": "h5",
                            "valexp": "RUN_GRAPH_CLUSTERING.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "clusters_h5",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-u9daea78c6f/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/merge_clusters"
    },
    {
        "name": "PREPROCESS_MATRIX",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/preprocess_matrix"
    },
    {
        "name": "RUN_DIFFERENTIAL_EXPRESSION",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "graphclust"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_10_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_2_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_3_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_4_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_5_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_6_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_7_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_8_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "clustering_key": "kmeans_9_clusters"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u9daea78cbe/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_differential_expression"
    },
    {
        "name": "RUN_FBPCA",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_fbpca"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "k_nearest": 228,
                            "neighbor_index": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-u9daea78c6f/files/neighbor_index.pickle",
                            "row_start": 0,
                            "submatrix": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-u9daea78c6f/files/0_submatrix.h5",
                            "total_rows": 6593,
                            "use_bcs": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split-u9daea78c6f/files/use_bcs.h5"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "input_pcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "similarity_type",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "balltree_leaf_size",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_graph_clustering"
    },
    {
        "name": "RUN_KMEANS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 3
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 8
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 10
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk8",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_kmeans"
    },
    {
        "name": "RUN_MULTIGENOME_ANALYSIS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_multigenome_analysis"
    },
    {
        "name": "RUN_PCA",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_pca"
    },
    {
        "name": "RUN_TSNE",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "feature_type": "Gene Expression",
                            "tsne_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_tsne"
    },
    {
        "name": "RUN_UMAP",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 4,
                            "__vmem_gb": 6,
                            "feature_type": "Gene Expression",
                            "umap_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_umap"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_csv",
                            "mode": "reference",
                            "output": "pca_csv",
                            "sweep": false,
                            "sweepRootId": "pca_csv",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_csv",
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "valexp": "COMBINE_CLUSTERING.clustering_csv",
                            "mode": "reference",
                            "output": "clustering_csv",
                            "sweep": false,
                            "sweepRootId": "clustering_csv",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u9daea78cbe/files/clustering_csv",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_csv",
                            "mode": "reference",
                            "output": "diffexp_csv",
                            "sweep": false,
                            "sweepRootId": "diffexp_csv",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-u9daea78cc8/files/diffexp_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_summary",
                            "mode": "reference",
                            "output": "multi_genome_summary",
                            "sweep": false,
                            "sweepRootId": "multi_genome_summary",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u9daea78c41/files/multi_genome_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_csv",
                            "mode": "reference",
                            "output": "multi_genome_csv",
                            "sweep": false,
                            "sweepRootId": "multi_genome_csv",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u9daea78c41/files/multi_genome_csv",
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_after_correction",
                            "mode": "reference",
                            "output": "batch_score_after_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_after_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u9daea78c65/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u9daea78cbe/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "valexp": "RUN_UMAP.umap_h5",
                            "mode": "reference",
                            "output": "umap_h5",
                            "sweep": false,
                            "sweepRootId": "umap_h5",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-u9daea78c6f/files/umap_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "valexp": "RUN_TSNE.tsne_csv",
                            "mode": "reference",
                            "output": "tsne_csv",
                            "sweep": false,
                            "sweepRootId": "tsne_csv",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-u9daea78c6f/files/tsne_csv",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u9daea78a98/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_h5",
                            "mode": "reference",
                            "output": "diffexp_h5",
                            "sweep": false,
                            "sweepRootId": "diffexp_h5",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-u9daea78cc8/files/diffexp_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "valexp": "RUN_TSNE.tsne_h5",
                            "mode": "reference",
                            "output": "tsne_h5",
                            "sweep": false,
                            "sweepRootId": "tsne_h5",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-u9daea78c6f/files/tsne_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "valexp": "RUN_UMAP.umap_csv",
                            "mode": "reference",
                            "output": "umap_csv",
                            "sweep": false,
                            "sweepRootId": "umap_csv",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-u9daea78c6f/files/umap_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_json",
                            "mode": "reference",
                            "output": "multi_genome_json",
                            "sweep": false,
                            "sweepRootId": "multi_genome_json",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u9daea78c41/files/multi_genome_json",
                            "waiting": false
                        },
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_before_correction",
                            "mode": "reference",
                            "output": "batch_score_before_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_before_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/summarize_analysis"
    },
    {
        "name": "SETUP_CHUNKS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "default_library_type",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "bamtofastq"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "self.library_type_filter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_name",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/setup_chunks"
    },
    {
        "name": "SUMMARIZE_REPORTS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summaries",
                            "type": "json",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "summaries",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u9daea78ec7/files/summary.json",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/summary.json",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u9daea78d97/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_reports"
    },
    {
        "name": "_BASIC_SC_RNA_COUNTER",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "CHECK_BARCODES_COMPATIBILITY.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SORT_BY_POS.index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_BASIC_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u9daea78ec7/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u9daea77c3f/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "COUNT_GENES.matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "FILTER_BARCODES.filtered_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SORT_BY_POS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u9daea77e5a/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u9daea75c80/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u9daea75c81/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u9daea75c82/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk46-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk47-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk48-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk49-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk50-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk51-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk52-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk53-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk54-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk55-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk56-u9daea75c83/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk57-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk58-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk59-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk60-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk61-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk62-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk63-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk64-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk65-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk66-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk67-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk68-u9daea75c84/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk69-u9daea75c85/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk70-u9daea75c85/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk71-u9daea75c85/files/read1s.fastq"
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ALIGN_READS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u9daea75721/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u9daea75722/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u9daea75723/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54-u9daea75724/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66-u9daea75725/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75-u9daea75726/files/reads.fastq/1.fastq.lz4",
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "max_hits_per_read",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_hits_per_read",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": -1,
                            "waiting": false
                        },
                        {
                            "id": "reads",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "reads",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75-u9daea75726/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/align_reads"
    },
    {
        "name": "ATTACH_BCS_AND_UMIS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-u9daea75d42/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-u9daea75d42/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-u9daea75d42/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-u9daea75d42/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u9daea75c80/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-u9daea75d43/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u9daea75c81/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-u9daea75d44/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u9daea75c82/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-u9daea75d45/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk46-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk46-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk47-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk47-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk48-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk48-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk49-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk49-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk50-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk50-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk51-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk51-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk52-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk52-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk53-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk53-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk54-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk54-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk55-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk55-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk56-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk56-u9daea75c83/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk57-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk57-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk58-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk58-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk59-u9daea75d46/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk59-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk60-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk60-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk61-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk61-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk62-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk62-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk63-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk63-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk64-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk64-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk65-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk65-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk66-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk66-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk67-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk67-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk68-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk68-u9daea75c84/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk69-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk69-u9daea75c85/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk70-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk70-u9daea75c85/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk71-u9daea75d47/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk71-u9daea75c85/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u9daea7689b/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "self.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u9daea75c80/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u9daea75c81/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u9daea75c82/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk46-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk47-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk48-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk49-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk50-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk51-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk52-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk53-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk54-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk55-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk56-u9daea75c83/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk57-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk58-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk59-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk60-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk61-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk62-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk63-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk64-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk65-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk66-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk67-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk68-u9daea75c84/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk69-u9daea75c85/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk70-u9daea75c85/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk71-u9daea75c85/files/tags.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u9daea75c7b/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "self.skip_metrics",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "genome_inputs",
                            "type": "bam",
                            "valexp": "ALIGN_READS.genome_output",
                            "mode": "reference",
                            "output": "genome_output",
                            "sweep": false,
                            "sweepRootId": "genome_inputs",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-u9daea75d42/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-u9daea75d42/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-u9daea75d42/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-u9daea75d42/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-u9daea75d43/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-u9daea75d44/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-u9daea75d45/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk45-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk46-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk47-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk48-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk49-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk50-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk51-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk52-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk53-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk54-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk55-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk56-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk57-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk58-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk59-u9daea75d46/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk60-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk61-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk62-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk63-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk64-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk65-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk66-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk67-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk68-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk69-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk70-u9daea75d47/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk71-u9daea75d47/files/genome_output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "self.rescue_multimappers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "self.correct_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u9daea75c7b/files/feature_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/attach_bcs_and_umis"
    },
    {
        "name": "BUCKET_BY_BC",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-u9daea7689e/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-u9daea7689f/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 2,
                            "__vmem_gb": 14,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 7,
                            "__threads": 2,
                            "__vmem_gb": 10,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 2,
                            "__vmem_gb": 7,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-u9daea768a0/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 2,
                            "__vmem_gb": 13,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 7,
                            "__threads": 2,
                            "__vmem_gb": 10,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 2,
                            "__vmem_gb": 6,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-u9daea768a1/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk46-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk47-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk48-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk49-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk50-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 2,
                            "__vmem_gb": 14,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk51-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 7,
                            "__threads": 2,
                            "__vmem_gb": 10,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk52-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 2,
                            "__vmem_gb": 6,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk53-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk54-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk55-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk56-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk57-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk58-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk59-u9daea768a2/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk60-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk61-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk62-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk63-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk64-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk65-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk66-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 9,
                            "__threads": 2,
                            "__vmem_gb": 12,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk67-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk68-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 11,
                            "__threads": 2,
                            "__vmem_gb": 14,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk69-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 7,
                            "__threads": 2,
                            "__vmem_gb": 10,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk70-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 2,
                            "__vmem_gb": 6,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk71-u9daea768a3/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                },
                                {
                                    "PU": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "LB": "0.1",
                                    "ID": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "PL": "ILLUMINA",
                                    "SM": "Nash_3_run"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "nbases",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "nbases",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "ATTACH_BCS_AND_UMIS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-u9daea7689e/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-u9daea7689f/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-u9daea768a0/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-u9daea768a1/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk45-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk46-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk47-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk48-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk49-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk50-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk51-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk52-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk53-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk54-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk55-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk56-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk57-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk58-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk59-u9daea768a2/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk60-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk61-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk62-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk63-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk64-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk65-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk66-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk67-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk68-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk69-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk70-u9daea768a3/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk71-u9daea768a3/files/output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_alignments",
                            "type": "int",
                            "valexp": "ATTACH_BCS_AND_UMIS.num_alignments",
                            "mode": "reference",
                            "output": "num_alignments",
                            "sweep": false,
                            "sweepRootId": "num_alignments",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                5876160,
                                5805898,
                                6270432,
                                6414698,
                                6089104,
                                5572285,
                                5543339,
                                5802117,
                                5509096,
                                5852357,
                                6080006,
                                5598882,
                                5517801,
                                6217881,
                                5870038,
                                7934292,
                                5215071,
                                2775068,
                                5902535,
                                5791275,
                                6294434,
                                6329116,
                                6113983,
                                5506309,
                                5658410,
                                5803376,
                                5475914,
                                5795786,
                                6113475,
                                5442510,
                                5956999,
                                6090334,
                                6190092,
                                7343980,
                                5102030,
                                1079129,
                                5868831,
                                5813175,
                                6307602,
                                6374409,
                                6093220,
                                5543942,
                                5566621,
                                5817732,
                                5467572,
                                5856788,
                                6144107,
                                5474364,
                                5890322,
                                6096433,
                                5602614,
                                8049451,
                                5099023,
                                1891575,
                                5881538,
                                5813665,
                                6302311,
                                6338090,
                                6108900,
                                5520062,
                                5638620,
                                5796503,
                                5470009,
                                5826376,
                                6119633,
                                5452286,
                                5948404,
                                6100988,
                                5836399,
                                7715746,
                                5099029,
                                1488057
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/bucket_reads_by_bc"
    },
    {
        "name": "CHUNK_READS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_001.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_001.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_002.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_002.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_002.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_001.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_001.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_002.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_002.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_002.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_001.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_001.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_002.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_002.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_002.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_001.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_001.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_002.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_002.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_002.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "self.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L001_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L002_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L003_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_I1_002.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R1_002.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/10X_Nash_3/Sample_NASH-5_0_1_HH5YNDSXX/bamtofastq_S1_L004_R2_002.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/chunk_reads"
    },
    {
        "name": "COUNT_GENES",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcodes_detected",
                            "type": "csv",
                            "valexp": "ATTACH_BCS_AND_UMIS.barcodes_detected",
                            "mode": "reference",
                            "output": "barcodes_detected",
                            "sweep": false,
                            "sweepRootId": "barcodes_detected",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u9daea7689b/files/barcodes_detected.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/count_genes"
    },
    {
        "name": "EXTRACT_READS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0008.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0008.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0009.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0009.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0010.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0010.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0008.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0008.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0009.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0009.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0010.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0010.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0008.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0008.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0009.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0009.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0010.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0010.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0008.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0008.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0009.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0009.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0010.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0010.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 75,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "augment_fastq",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "augment_fastq",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "CHUNK_READS.out_chunks",
                            "mode": "reference",
                            "output": "out_chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0008.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0008.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0009.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0009.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/I1-0010.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R1-0010.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u9daea75533/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:1",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk1-u9daea75533/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0008.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0008.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0009.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0009.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/I1-0010.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R1-0010.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk2-u9daea75533/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:2",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk3-u9daea75533/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0008.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0008.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0009.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0009.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/I1-0010.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R1-0010.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk4-u9daea75533/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:3",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk5-u9daea75534/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0008.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0008.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0009.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0009.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/I1-0010.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R1-0010.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk6-u9daea75534/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "Nash_3_run:0:1:HH5YNDSXX:4",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk7-u9daea75534/files/R2-0007.fastq.lz4"
                                    }
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/extract_reads"
    },
    {
        "name": "FILTER_BARCODES",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u9daea77c3f/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_fastq_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "raw_fastq_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u9daea75c7b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u9daea7689b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "Nash_3_run",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/filter_barcodes"
    },
    {
        "name": "MARK_DUPLICATES",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 1,
                            "__vmem_gb": 23,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 29572041605120,
                            "chunk_size_gb": 8.237541022239496,
                            "chunk_start": 165347328,
                            "major_barcode_proportion": 1.0
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 14,
                            "__threads": 1,
                            "__vmem_gb": 17,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 60259967916573,
                            "chunk_size_gb": 8.548331354508104,
                            "chunk_start": 29572041605120,
                            "major_barcode_proportion": 0.30158730158730157
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 92381408540739,
                            "chunk_size_gb": 8.947643138022862,
                            "chunk_start": 60259967916573,
                            "major_barcode_proportion": 0.06575073601570167
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 124166056118008,
                            "chunk_size_gb": 8.853827587624286,
                            "chunk_start": 92381408540739,
                            "major_barcode_proportion": 0.07283464566929133
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 156937739030162,
                            "chunk_size_gb": 9.12878649642331,
                            "chunk_start": 124166056118008,
                            "major_barcode_proportion": 0.03550295857988166
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 190039738708704,
                            "chunk_size_gb": 9.220791263147637,
                            "chunk_start": 156937739030162,
                            "major_barcode_proportion": 0.034722222222222224
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 222230693215402,
                            "chunk_size_gb": 8.967022625436257,
                            "chunk_start": 190039738708704,
                            "major_barcode_proportion": 0.07345739471106758
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 255094544437069,
                            "chunk_size_gb": 9.154470875218871,
                            "chunk_start": 222230693215402,
                            "major_barcode_proportion": 0.027586206896551724
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 287402168554842,
                            "chunk_size_gb": 8.999506064355261,
                            "chunk_start": 255094544437069,
                            "major_barcode_proportion": 0.03842364532019704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 320337555566438,
                            "chunk_size_gb": 9.174369158571885,
                            "chunk_start": 287402168554842,
                            "major_barcode_proportion": 0.04930966469428008
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 353034934654429,
                            "chunk_size_gb": 9.108083182999588,
                            "chunk_start": 320337555566438,
                            "major_barcode_proportion": 0.07509881422924901
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 385932229661891,
                            "chunk_size_gb": 9.163766501600547,
                            "chunk_start": 353034934654429,
                            "major_barcode_proportion": 0.051181102362204724
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 418398422504359,
                            "chunk_size_gb": 9.043678203262276,
                            "chunk_start": 385932229661891,
                            "major_barcode_proportion": 0.04356435643564356
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 451449608842104,
                            "chunk_size_gb": 9.206692913203328,
                            "chunk_start": 418398422504359,
                            "major_barcode_proportion": 0.04282868525896414
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 483967428816079,
                            "chunk_size_gb": 9.058068282361173,
                            "chunk_start": 451449608842104,
                            "major_barcode_proportion": 0.05666003976143141
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 517108958559290,
                            "chunk_size_gb": 9.231815284362845,
                            "chunk_start": 483967428816079,
                            "major_barcode_proportion": 0.0650887573964497
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 549316225149578,
                            "chunk_size_gb": 8.97155603807971,
                            "chunk_start": 517108958559290,
                            "major_barcode_proportion": 0.07163886162904809
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 581883013328203,
                            "chunk_size_gb": 9.071705835334832,
                            "chunk_start": 549316225149578,
                            "major_barcode_proportion": 0.03964321110009911
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 614649389385029,
                            "chunk_size_gb": 9.127295318650773,
                            "chunk_start": 581883013328203,
                            "major_barcode_proportion": 0.03458498023715415
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 647087114137860,
                            "chunk_size_gb": 9.035757008223623,
                            "chunk_start": 614649389385029,
                            "major_barcode_proportion": 0.05824284304047384
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 680055156710719,
                            "chunk_size_gb": 9.183484599299256,
                            "chunk_start": 647087114137860,
                            "major_barcode_proportion": 0.05986261040235525
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 712684389719331,
                            "chunk_size_gb": 9.08910674917036,
                            "chunk_start": 680055156710719,
                            "major_barcode_proportion": 0.05550049554013875
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 745655848840997,
                            "chunk_size_gb": 9.184434581152656,
                            "chunk_start": 712684389719331,
                            "major_barcode_proportion": 0.0374384236453202
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 778462628656925,
                            "chunk_size_gb": 9.138555972738434,
                            "chunk_start": 745655848840997,
                            "major_barcode_proportion": 0.026627218934911243
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 811679441234962,
                            "chunk_size_gb": 9.252767936759868,
                            "chunk_start": 778462628656925,
                            "major_barcode_proportion": 0.03880597014925373
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 844622511250108,
                            "chunk_size_gb": 9.176528155130653,
                            "chunk_start": 811679441234962,
                            "major_barcode_proportion": 0.03496503496503497
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 876920560257343,
                            "chunk_size_gb": 8.99685507150637,
                            "chunk_start": 844622511250108,
                            "major_barcode_proportion": 0.058765915768854066
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 909433975727955,
                            "chunk_size_gb": 9.056845867831058,
                            "chunk_start": 876920560257343,
                            "major_barcode_proportion": 0.04437869822485207
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 942042830062537,
                            "chunk_size_gb": 9.083416095531328,
                            "chunk_start": 909433975727955,
                            "major_barcode_proportion": 0.048562933597621406
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 975306198132385,
                            "chunk_size_gb": 9.26574367713577,
                            "chunk_start": 942042830062537,
                            "major_barcode_proportion": 0.036669970267591674
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1007812774985728,
                            "chunk_size_gb": 9.054932887673242,
                            "chunk_start": 975306198132385,
                            "major_barcode_proportion": 0.04795204795204795
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1041509685924913,
                            "chunk_size_gb": 9.386524038084886,
                            "chunk_start": 1007812774985728,
                            "major_barcode_proportion": 0.04407443682664055
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1073483480317935,
                            "chunk_size_gb": 8.906521558673528,
                            "chunk_start": 1041509685924913,
                            "major_barcode_proportion": 0.03066271018793274
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1105888100650214,
                            "chunk_size_gb": 9.02653949880393,
                            "chunk_start": 1073483480317935,
                            "major_barcode_proportion": 0.028741328047571853
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1138328649974141,
                            "chunk_size_gb": 9.036538944590916,
                            "chunk_start": 1105888100650214,
                            "major_barcode_proportion": 0.05742574257425743
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1170843032244801,
                            "chunk_size_gb": 9.057142197470437,
                            "chunk_start": 1138328649974141,
                            "major_barcode_proportion": 0.04433497536945813
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1203396876315772,
                            "chunk_size_gb": 9.068116215797383,
                            "chunk_start": 1170843032244801,
                            "major_barcode_proportion": 0.046214355948869225
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1235931750617940,
                            "chunk_size_gb": 9.06280926449697,
                            "chunk_start": 1203396876315772,
                            "major_barcode_proportion": 0.048323471400394474
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1268382240588072,
                            "chunk_size_gb": 9.039312872616716,
                            "chunk_start": 1235931750617940,
                            "major_barcode_proportion": 0.06045589692765114
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1300940438750187,
                            "chunk_size_gb": 9.069325595620592,
                            "chunk_start": 1268382240588072,
                            "major_barcode_proportion": 0.04330708661417323
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1334210800680693,
                            "chunk_size_gb": 9.267705272734053,
                            "chunk_start": 1300940438750187,
                            "major_barcode_proportion": 0.041916167664670656
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1366719804465621,
                            "chunk_size_gb": 9.05560946928765,
                            "chunk_start": 1334210800680693,
                            "major_barcode_proportion": 0.033630069238377844
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1399199481781854,
                            "chunk_size_gb": 9.047448300548304,
                            "chunk_start": 1366719804465621,
                            "major_barcode_proportion": 0.041666666666666664
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1431555873375115,
                            "chunk_size_gb": 9.013089725935657,
                            "chunk_start": 1399199481781854,
                            "major_barcode_proportion": 0.04757185332011893
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1464174486513020,
                            "chunk_size_gb": 9.086148838264716,
                            "chunk_start": 1431555873375115,
                            "major_barcode_proportion": 0.03747534516765286
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1496981346427531,
                            "chunk_size_gb": 9.13858593065725,
                            "chunk_start": 1464174486513020,
                            "major_barcode_proportion": 0.04532019704433497
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1530380518916916,
                            "chunk_size_gb": 9.303582226398353,
                            "chunk_start": 1496981346427531,
                            "major_barcode_proportion": 0.03431372549019608
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1562936909382325,
                            "chunk_size_gb": 9.06880920945872,
                            "chunk_start": 1530380518916916,
                            "major_barcode_proportion": 0.038728897715988087
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1595626902229309,
                            "chunk_size_gb": 9.106008163544145,
                            "chunk_start": 1562936909382325,
                            "major_barcode_proportion": 0.04420432220039293
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1628254219381249,
                            "chunk_size_gb": 9.088574772476699,
                            "chunk_start": 1595626902229309,
                            "major_barcode_proportion": 0.0297029702970297
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1661063537116423,
                            "chunk_size_gb": 9.139264155301937,
                            "chunk_start": 1628254219381249,
                            "major_barcode_proportion": 0.03143418467583497
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1693695847939535,
                            "chunk_size_gb": 9.089943708796223,
                            "chunk_start": 1661063537116423,
                            "major_barcode_proportion": 0.03066271018793274
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1726679655685734,
                            "chunk_size_gb": 9.187872439459687,
                            "chunk_start": 1693695847939535,
                            "major_barcode_proportion": 0.038272816486751716
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1759216664374159,
                            "chunk_size_gb": 9.063395388166384,
                            "chunk_start": 1726679655685734,
                            "major_barcode_proportion": 0.036669970267591674
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1791963022983026,
                            "chunk_size_gb": 9.12172822088898,
                            "chunk_start": 1759216664374159,
                            "major_barcode_proportion": 0.06923837784371908
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1825034375181799,
                            "chunk_size_gb": 9.212281479894147,
                            "chunk_start": 1791963022983026,
                            "major_barcode_proportion": 0.03493013972055888
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1857843795665899,
                            "chunk_size_gb": 9.13928578853399,
                            "chunk_start": 1825034375181799,
                            "major_barcode_proportion": 0.045862412761714856
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1891020224424289,
                            "chunk_size_gb": 9.241540325836777,
                            "chunk_start": 1857843795665899,
                            "major_barcode_proportion": 0.03468780971258672
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1923455915238654,
                            "chunk_size_gb": 9.035184740776257,
                            "chunk_start": 1891020224424289,
                            "major_barcode_proportion": 0.040755467196819085
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1955847407478396,
                            "chunk_size_gb": 9.02286639507224,
                            "chunk_start": 1923455915238654,
                            "major_barcode_proportion": 0.05069582504970179
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 1988438331427924,
                            "chunk_size_gb": 9.078449799176136,
                            "chunk_start": 1955847407478396,
                            "major_barcode_proportion": 0.040473840078973346
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2021176750060285,
                            "chunk_size_gb": 9.119511261873026,
                            "chunk_start": 1988438331427924,
                            "major_barcode_proportion": 0.038348082595870206
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2054244849466471,
                            "chunk_size_gb": 9.211359958976416,
                            "chunk_start": 2021176750060285,
                            "major_barcode_proportion": 0.0527363184079602
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2086268991461954,
                            "chunk_size_gb": 8.92054317910365,
                            "chunk_start": 2054244849466471,
                            "major_barcode_proportion": 0.03042198233562316
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2119070659824342,
                            "chunk_size_gb": 9.137124601268178,
                            "chunk_start": 2086268991461954,
                            "major_barcode_proportion": 0.0531496062992126
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2151950318592684,
                            "chunk_size_gb": 9.158859774221039,
                            "chunk_start": 2119070659824342,
                            "major_barcode_proportion": 0.026892430278884463
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 12,
                            "__threads": 1,
                            "__vmem_gb": 15,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": 2184285891527098,
                            "chunk_size_gb": 9.007290705321553,
                            "chunk_start": 2151950318592684,
                            "major_barcode_proportion": 0.04407443682664055
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_compression_ratio": 0.05101490374982661,
                            "chunk_end": null,
                            "chunk_size_gb": 0.002248651244511597,
                            "chunk_start": 2184285891527098,
                            "major_barcode_proportion": 0.5833333333333334
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "SORT_BY_BC",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "input",
                            "node": "SORT_BY_BC",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join-u9daea777a6/files/default.bam",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin/cr_stage martian mark_duplicates"
    },
    {
        "name": "REPORT_MOLECULES",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 45,
                    "__vmem_gb": 48
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u9daea75c7b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u9daea7689b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u9daea77c3f/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/report_molecules"
    },
    {
        "name": "SORT_BY_BC",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CG-1.bam"
                            ],
                            "prefix": "CG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TG-1.bam"
                            ],
                            "prefix": "TG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CT-1.bam"
                            ],
                            "prefix": "CT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GG-1.bam"
                            ],
                            "prefix": "GG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TC-1.bam"
                            ],
                            "prefix": "TC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GA-1.bam"
                            ],
                            "prefix": "GA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CA-1.bam"
                            ],
                            "prefix": "CA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CC-1.bam"
                            ],
                            "prefix": "CC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AT-1.bam"
                            ],
                            "prefix": "AT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GT-1.bam"
                            ],
                            "prefix": "GT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AC-1.bam"
                            ],
                            "prefix": "AC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AA-1.bam"
                            ],
                            "prefix": "AA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AG-1.bam"
                            ],
                            "prefix": "AG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GC-1.bam"
                            ],
                            "prefix": "GC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TA-1.bam"
                            ],
                            "prefix": "TA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TT-1.bam"
                            ],
                            "prefix": "TT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-.bam"
                            ],
                            "prefix": ""
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "buckets",
                            "type": "map",
                            "valexp": "BUCKET_BY_BC.buckets",
                            "mode": "reference",
                            "output": "buckets",
                            "sweep": false,
                            "sweepRootId": "buckets",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": {
                                "CG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CG-1.bam"
                                ],
                                "TG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TG-1.bam"
                                ],
                                "TA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TA-1.bam"
                                ],
                                "GG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GG-1.bam"
                                ],
                                "TC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TC-1.bam"
                                ],
                                "GA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GA-1.bam"
                                ],
                                "CA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CA-1.bam"
                                ],
                                "CC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CC-1.bam"
                                ],
                                "AT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AT-1.bam"
                                ],
                                "AC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AC-1.bam"
                                ],
                                "AA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AA-1.bam"
                                ],
                                "AG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-AG-1.bam"
                                ],
                                "GC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GC-1.bam"
                                ],
                                "CT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-CT-1.bam"
                                ],
                                "": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-.bam"
                                ],
                                "TT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-TT-1.bam"
                                ],
                                "GT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u9daea77412/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u9daea77413/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u9daea77414/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk45-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk46-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk47-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk48-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk49-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk50-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk51-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk52-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk53-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk54-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk55-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk56-u9daea77415/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk57-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk58-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk59-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk60-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk61-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk62-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk63-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk64-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk65-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk66-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk67-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk68-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk69-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk70-u9daea77416/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk71-u9daea77416/files/bc-GT-1.bam"
                                ]
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_bc"
    },
    {
        "name": "SORT_BY_POS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 6,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u9daea77c67/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u9daea77c68/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u9daea77c69/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u9daea77c6a/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk47-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk48-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk49-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk50-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk51-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk52-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk53-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk54-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk55-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk56-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk57-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk58-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk59-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk60-u9daea77c6b/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk61-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk62-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk63-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk64-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk65-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk66-u9daea77c6c/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk67-u9daea77c6c/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_threads",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 6,
                            "waiting": false
                        },
                        {
                            "id": "mem_gb",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "mem_gb",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_pos"
    },
    {
        "name": "SUBSAMPLE_READS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 1,
                            "__vmem_gb": 8,
                            "chunk_len": 40029194,
                            "chunk_start": 0,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.09494274569380357
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5266,
                                    "library_subsample_rates": [
                                        0.09999369976471392
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 10533,
                                    "library_subsample_rates": [
                                        0.2000063880785666
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 15799,
                                    "library_subsample_rates": [
                                        0.3000000878432805
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.37977098277521426
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 21065,
                                    "library_subsample_rates": [
                                        0.3999937876079944
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 26332,
                                    "library_subsample_rates": [
                                        0.5000064759218471
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 31598,
                                    "library_subsample_rates": [
                                        0.600000175686561
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 36864,
                                    "library_subsample_rates": [
                                        0.699993875451275
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 42131,
                                    "library_subsample_rates": [
                                        0.8000065637651277
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 47397,
                                    "library_subsample_rates": [
                                        0.9000002635298415
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.9494274569380358
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 52663,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.18887911512601194
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5266,
                                    "library_subsample_rates": [
                                        0.19892748405071578
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 10533,
                                    "library_subsample_rates": [
                                        0.3978927439244567
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 15799,
                                    "library_subsample_rates": [
                                        0.5968202279751725
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.7555164605040477
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 21065,
                                    "library_subsample_rates": [
                                        0.7957477120258882
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 26332,
                                    "library_subsample_rates": [
                                        0.9947129718996293
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 31598,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 36864,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 42131,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 47397,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 52663,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "chunk_len": 34003529,
                            "chunk_start": 40029194,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.09494274569380357
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5266,
                                    "library_subsample_rates": [
                                        0.09999369976471392
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 10533,
                                    "library_subsample_rates": [
                                        0.2000063880785666
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 15799,
                                    "library_subsample_rates": [
                                        0.3000000878432805
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.37977098277521426
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 21065,
                                    "library_subsample_rates": [
                                        0.3999937876079944
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 26332,
                                    "library_subsample_rates": [
                                        0.5000064759218471
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 31598,
                                    "library_subsample_rates": [
                                        0.600000175686561
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 36864,
                                    "library_subsample_rates": [
                                        0.699993875451275
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 42131,
                                    "library_subsample_rates": [
                                        0.8000065637651277
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 47397,
                                    "library_subsample_rates": [
                                        0.9000002635298415
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.9494274569380358
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 52663,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.18887911512601194
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5266,
                                    "library_subsample_rates": [
                                        0.19892748405071578
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 10533,
                                    "library_subsample_rates": [
                                        0.3978927439244567
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 15799,
                                    "library_subsample_rates": [
                                        0.5968202279751725
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.7555164605040477
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 21065,
                                    "library_subsample_rates": [
                                        0.7957477120258882
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 26332,
                                    "library_subsample_rates": [
                                        0.9947129718996293
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 31598,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 36864,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 42131,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 47397,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 52663,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_BASIC_REPORTS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filter_barcodes_summary",
                            "type": "json",
                            "valexp": "FILTER_BARCODES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "filter_barcodes_summary",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "subsample_molecules_summary",
                            "type": "json",
                            "valexp": "SUBSAMPLE_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "subsample_molecules_summary",
                            "node": "SUBSAMPLE_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join-u9daea78d5c/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u9daea75c7b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u9daea7689b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u9daea77c3f/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "count_genes_reporter_summary",
                            "type": "json",
                            "valexp": "COUNT_GENES.reporter_summary",
                            "mode": "reference",
                            "output": "reporter_summary",
                            "sweep": false,
                            "sweepRootId": "count_genes_reporter_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u9daea77e5a/files/reporter_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_basic_reports"
    },
    {
        "name": "SUMMARIZE_READ_REPORTS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u9daea75721/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u9daea75722/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u9daea75723/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54-u9daea75724/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66-u9daea75725/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75-u9daea75726/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "EXTRACT_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u9daea7571b/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u9daea7571b/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "EXTRACT_READS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:1",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:2",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:3",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4",
                                "Nash_3_run:0:1:HH5YNDSXX:4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "EXTRACT_READS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u9daea75721/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u9daea75722/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u9daea75723/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54-u9daea75724/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66-u9daea75725/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74-u9daea75726/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75-u9daea75726/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u9daea75721/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u9daea75722/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u9daea75723/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk45-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk46-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk47-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk49-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk50-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk51-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk52-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk53-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk54-u9daea75724/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk55-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk56-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk57-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk58-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk59-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk60-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk61-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk62-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk63-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk64-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk65-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk66-u9daea75725/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk68-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk69-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk70-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk71-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk72-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk73-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk74-u9daea75726/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk75-u9daea75726/files/tags.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "EXTRACT_READS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "EXTRACT_READS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u9daea7571b/files/feature_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_read_reports"
    },
    {
        "name": "_CRISPR_ANALYZER",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "_BASIC_SC_RNA_COUNTER.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u9daea78ec7/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis_metrics",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_call_metrics_json",
                            "mode": "reference",
                            "output": "protospacer_call_metrics_json",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis_metrics",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_CRISPR_ANALYSIS.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_PROTOSPACERS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "self.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "self.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u9daea78a6a/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "self.counter_metrics_json",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u9daea78ec7/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/call_protospacers"
    },
    {
        "name": "SUMMARIZE_CRISPR_ANALYSIS",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "perturbation_effects_by_feature",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_summary",
                            "mode": "reference",
                            "output": "protospacer_calls_summary",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_summary",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_csv",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_csv",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_csv",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_json",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_json",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_json",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_efficiencies_by_feature",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbation_efficiencies_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.cells_per_protospacer",
                            "mode": "reference",
                            "output": "cells_per_protospacer",
                            "sweep": false,
                            "sweepRootId": "cells_per_protospacer",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbations_efficiencies_by_target",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbations_efficiencies_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_target",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/summarize_crispr_analysis"
    },
    {
        "name": "_PERTURBATIONS_BY_FEATURE",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    },
    {
        "name": "_PERTURBATIONS_BY_TARGET",
        "fqname": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH3/Nash_3_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u9daea788b6/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.Nash_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    }
]