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Run time for each submitted job:
Job run times that deviate from the average should be inspected for possible errors (check the job log files)
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02_FASTQC
Step_02_G83_M1.o8451792:0 hours, 20 minutes and 7 seconds elapsed.
Step_02_G83_M2.o8451793:0 hours, 21 minutes and 1 seconds elapsed.
Step_02_G83_M3.o8451794:0 hours, 15 minutes and 54 seconds elapsed.
Step_02_G83_M4.o8451795:0 hours, 14 minutes and 54 seconds elapsed.
03_Read_Length
Step_03_G83_M1.o8454582:0 hours, 6 minutes and 26 seconds elapsed.
Step_03_G83_M2.o8454583:0 hours, 4 minutes and 56 seconds elapsed.
Step_03_G83_M3.o8454584:0 hours, 6 minutes and 59 seconds elapsed.
Step_03_G83_M4.o8454585:0 hours, 4 minutes and 42 seconds elapsed.
04_TopHat_Paired_End
Step_04_G83_M1.o8454586:8 hours, 46 minutes and 16 seconds elapsed.
Step_04_G83_M2.o8454587:9 hours, 44 minutes and 56 seconds elapsed.
Step_04_G83_M3.o8454588:5 hours, 44 minutes and 23 seconds elapsed.
Step_04_G83_M4.o8454589:4 hours, 31 minutes and 46 seconds elapsed.
05_Read_Strandness
Step_05_G83_M1.o8468073:0 hours, 0 minutes and 23 seconds elapsed.
Step_05_G83_M2.o8468074:0 hours, 0 minutes and 57 seconds elapsed.
Step_05_G83_M3.o8468075:0 hours, 0 minutes and 57 seconds elapsed.
Step_05_G83_M4.o8468076:0 hours, 0 minutes and 34 seconds elapsed.
06_CollectRnaSeqMetrics
Step_06_G83_M1.o8468077:0 hours, 11 minutes and 35 seconds elapsed.
Step_06_G83_M2.o8468078:0 hours, 7 minutes and 23 seconds elapsed.
Step_06_G83_M3.o8468079:0 hours, 5 minutes and 54 seconds elapsed.
Step_06_G83_M4.o8468080:0 hours, 5 minutes and 36 seconds elapsed.
07_CollectInsertSizeMetrics
Step_07_G83_M1.o8468087:0 hours, 5 minutes and 26 seconds elapsed.
Step_07_G83_M2.o8468088:0 hours, 3 minutes and 26 seconds elapsed.
Step_07_G83_M3.o8468089:0 hours, 4 minutes and 39 seconds elapsed.
Step_07_G83_M4.o8468090:0 hours, 2 minutes and 58 seconds elapsed.
08a_Extract_Counts_HTSeq
Step_08a_G83_M1.o9152336:1 hours, 48 minutes and 50 seconds elapsed.
Step_08a_G83_M1.o9152337:2 hours, 25 minutes and 11 seconds elapsed.
Step_08a_G83_M1.o9152338:3 hours, 40 minutes and 49 seconds elapsed.
Step_08a_G83_M1.o9152339:1 hours, 28 minutes and 39 seconds elapsed.
Step_08a_G83_M2.o9152340:1 hours, 1 minutes and 13 seconds elapsed.
Step_08a_G83_M2.o9152341:2 hours, 10 minutes and 41 seconds elapsed.
Step_08a_G83_M2.o9152342:3 hours, 8 minutes and 24 seconds elapsed.
Step_08a_G83_M2.o9152343:3 hours, 41 minutes and 52 seconds elapsed.
Step_08a_G83_M3.o9152344:1 hours, 41 minutes and 40 seconds elapsed.
Step_08a_G83_M3.o9152345:1 hours, 1 minutes and 4 seconds elapsed.
Step_08a_G83_M3.o9152346:2 hours, 36 minutes and 50 seconds elapsed.
Step_08a_G83_M3.o9152347:1 hours, 24 minutes and 0 seconds elapsed.
Step_08a_G83_M4.o9152348:0 hours, 48 minutes and 29 seconds elapsed.
Step_08a_G83_M4.o9152349:0 hours, 54 minutes and 44 seconds elapsed.
Step_08a_G83_M4.o9152350:1 hours, 17 minutes and 0 seconds elapsed.
Step_08a_G83_M4.o9152351:2 hours, 49 minutes and 1 seconds elapsed.
08b_Extract_Counts_featureCounts
Step_08b_G83_M1.o9152996:0 hours, 34 minutes and 11 seconds elapsed.
Step_08b_G83_M1.o9152999:0 hours, 43 minutes and 10 seconds elapsed.
Step_08b_G83_M1.o9153000:0 hours, 47 minutes and 31 seconds elapsed.
Step_08b_G83_M1.o9153001:0 hours, 29 minutes and 36 seconds elapsed.
Step_08b_G83_M1.o9153002:0 hours, 37 minutes and 37 seconds elapsed.
Step_08b_G83_M1.o9153003:0 hours, 35 minutes and 46 seconds elapsed.
Step_08b_G83_M1.o9153004:0 hours, 35 minutes and 41 seconds elapsed.
Step_08b_G83_M1.o9153005:1 hours, 16 minutes and 54 seconds elapsed.
Step_08b_G83_M2.o9153006:0 hours, 36 minutes and 47 seconds elapsed.
Step_08b_G83_M2.o9153007:0 hours, 43 minutes and 20 seconds elapsed.
Step_08b_G83_M2.o9153008:0 hours, 47 minutes and 33 seconds elapsed.
Step_08b_G83_M2.o9153009:0 hours, 31 minutes and 0 seconds elapsed.
Step_08b_G83_M2.o9153010:0 hours, 37 minutes and 47 seconds elapsed.
Step_08b_G83_M2.o9153011:0 hours, 37 minutes and 43 seconds elapsed.
Step_08b_G83_M2.o9153012:1 hours, 17 minutes and 31 seconds elapsed.
Step_08b_G83_M2.o9153013:1 hours, 19 minutes and 23 seconds elapsed.
Step_08b_G83_M3.o9153014:0 hours, 59 minutes and 18 seconds elapsed.
Step_08b_G83_M3.o9153015:1 hours, 11 minutes and 51 seconds elapsed.
Step_08b_G83_M3.o9153016:1 hours, 19 minutes and 29 seconds elapsed.
Step_08b_G83_M3.o9153017:0 hours, 53 minutes and 11 seconds elapsed.
Step_08b_G83_M3.o9153018:1 hours, 3 minutes and 35 seconds elapsed.
Step_08b_G83_M3.o9153019:0 hours, 30 minutes and 39 seconds elapsed.
Step_08b_G83_M3.o9153020:1 hours, 2 minutes and 43 seconds elapsed.
Step_08b_G83_M3.o9153021:0 hours, 30 minutes and 35 seconds elapsed.
Step_08b_G83_M4.o9153022:0 hours, 28 minutes and 4 seconds elapsed.
Step_08b_G83_M4.o9153023:0 hours, 32 minutes and 47 seconds elapsed.
Step_08b_G83_M4.o9153024:0 hours, 37 minutes and 17 seconds elapsed.
Step_08b_G83_M4.o9153025:0 hours, 46 minutes and 49 seconds elapsed.
Step_08b_G83_M4.o9153026:0 hours, 29 minutes and 32 seconds elapsed.
Step_08b_G83_M4.o9153027:0 hours, 30 minutes and 38 seconds elapsed.
Step_08b_G83_M4.o9153028:0 hours, 58 minutes and 23 seconds elapsed.
Step_08b_G83_M4.o9153029:1 hours, 0 minutes and 10 seconds elapsed.
09a_DiffExp_1_HTSeq
Step_09a_DiffExp_1a.o9153849:3 minutes and 57 seconds elapsed.
Step_09a_DiffExp_1b.o9153850:2 minutes and 37 seconds elapsed.
Step_09a_DiffExp_1c.o9153851:3 minutes and 58 seconds elapsed.
09b_DiffExp_1_featureCounts
Step_09b_DiffExp_1a.o9153858:3 minutes and 18 seconds elapsed.
Step_09b_DiffExp_1b.o9153859:2 minutes and 37 seconds elapsed.
Step_09b_DiffExp_1c.o9153860:3 minutes and 24 seconds elapsed.
09c_DiffExp_1_lncRNA_featureCounts
Step_09c_DiffExp_1d.o9153862:0 minutes and 46 seconds elapsed.
Step_09c_DiffExp_1e.o9153863:0 minutes and 45 seconds elapsed.
Step_09c_DiffExp_1f.o9153864:1 minutes and 25 seconds elapsed.
Step_09c_DiffExp_1g.o9153865:0 minutes and 46 seconds elapsed.
10_bamCorrelate
Step_10_bamCor_01.o9153867:0 hours, 26 minutes and 34 seconds elapsed.
Step_10_bamCor_02.o9153868:0 hours, 7 minutes and 23 seconds elapsed.
Step_10_bamCor_03.o9153869:0 hours, 54 minutes and 33 seconds elapsed.
Step_10_bamCor_04.o9153870:0 hours, 44 minutes and 40 seconds elapsed.
Step_10_bamCor_Full.o9153866:0 hours, 36 minutes and 46 seconds elapsed.
11_UCSC_BigWig
Step_11_G83_M1.o9153967:2 hours, 19 minutes and 33 seconds elapsed.
Step_11_G83_M2.o9153968:2 hours, 23 minutes and 36 seconds elapsed.
Step_11_G83_M3.o9153969:1 hours, 56 minutes and 46 seconds elapsed.
Step_11_G83_M4.o9153970:1 hours, 54 minutes and 7 seconds elapsed.
#--------------------------------------------------------------
03_Run_Pipeline.sh run time:
10 hours, 42 minutes and 35 seconds elapsed.
#--------------------------------------------------------------