-----------------------
Start of variable list:
-----------------------
Sample_ID:
G167_M1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/Chad/G167/G167_Samples
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/Chad/G167/G167_Samples/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Sat Jul 14 20:12:42 EDT 2018
Running on node : scc-kb8
Current directory : /restricted/projectnb/waxmanlab/kkarri/Chad/G167/G167_Samples/Scripts/03_Read_Length
Current job ID : 6936727
Current job name : Step_03_G167_M1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6936727.1.linga

Loading required modules...


List files in scratch directory:

total 3.2G
drwx------   2 kkarri waxmanlab 4.0K Jul 14 20:13 .
drwxrwxrwt. 81 root   root      112K Jul 14 20:12 ..
-rwxr-xr-x   1 kkarri waxmanlab 1.6G Jul 14 20:13 1_S23_R1_001.fastq.gz
-rwxr-xr-x   1 kkarri waxmanlab 1.7G Jul 14 20:15 1_S23_R2_001.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing 1_S23_R1_001.fastq


Processing 1_S23_R2_001.fastq


Ending Read Length


List files in scratch

total 15G
drwx------   2 kkarri waxmanlab 4.0K Jul 14 20:17 .
drwxrwxrwt. 78 root   root      112K Jul 14 20:18 ..
-rwxr-xr-x   1 kkarri waxmanlab 7.2G Jul 14 20:13 1_S23_R1_001.fastq
-rwxr-xr-x   1 kkarri waxmanlab 7.2G Jul 14 20:15 1_S23_R2_001.fastq
==========================================================
Finished on : Sat Jul 14 20:19:03 EDT 2018
0 hours, 6 minutes and 21 seconds elapsed.
==========================================================