-----------------------
Start of variable list:
-----------------------
Sample_ID:
NSM_IP2
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/IP_Saline
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/IP_Saline/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jun 14 21:23:29 EDT 2017
Running on node : scc-ka6
Current directory : /restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/IP_Saline/Scripts/03_Read_Length
Current job ID : 9328316
Current job name : Step_03_NSM_IP2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/9328316.1.linga

Loading required modules...


List files in scratch directory:

total 3.0G
drwxr-xr-x    2 kkarri montilab-p 4.0K Jun 14 21:23 .
drwxrwxrwt. 122 root   root        92K Jun 14 21:23 ..
-rw-r--r--    1 kkarri montilab-p 1.5G Jun 14 21:23 SRR1177985_R1.fastq.gz
-rw-r--r--    1 kkarri montilab-p 1.5G Jun 14 21:23 SRR1177985_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR1177985_R1.fastq


Processing SRR1177985_R2.fastq


Ending Read Length


List files in scratch

total 8.8G
drwxr-xr-x    2 kkarri montilab-p 4.0K Jun 14 21:25 .
drwxrwxrwt. 123 root   root        92K Jun 14 21:26 ..
-rw-r--r--    1 kkarri montilab-p 4.4G Jun 14 21:23 SRR1177985_R1.fastq
-rw-r--r--    1 kkarri montilab-p 4.4G Jun 14 21:23 SRR1177985_R2.fastq
==========================================================
Finished on : Wed Jun 14 21:27:00 EDT 2017
0 hours, 3 minutes and 31 seconds elapsed.
==========================================================