-----------------------
Start of variable list:
-----------------------
Sample_ID:
PB_M3
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/Water_Saline
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/Water_Saline/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Jun 16 10:07:12 EDT 2017
Running on node : scc-kb5
Current directory : /restricted/projectnb/waxmanlab/kkarri/samples/fastqfiles/Water_Saline/Scripts/03_Read_Length
Current job ID : 9351439
Current job name : Step_03_PB_M3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/9351439.1.linga

Loading required modules...


List files in scratch directory:

total 3.9G
drwxr-xr-x    2 kkarri montilab-p 4.0K Jun 16 10:07 .
drwxrwxrwt. 118 root   root       268K Jun 16 10:07 ..
-rw-r--r--    1 kkarri montilab-p 2.0G Jun 16 10:07 SRR1177996_R1.fastq.gz
-rw-r--r--    1 kkarri montilab-p 2.0G Jun 16 10:07 SRR1177996_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR1177996_R1.fastq


Processing SRR1177996_R2.fastq


Ending Read Length


List files in scratch

total 12G
drwxr-xr-x    2 kkarri montilab-p 4.0K Jun 16 10:09 .
drwxrwxrwt. 118 root   root       268K Jun 16 10:07 ..
-rw-r--r--    1 kkarri montilab-p 5.7G Jun 16 10:07 SRR1177996_R1.fastq
-rw-r--r--    1 kkarri montilab-p 5.7G Jun 16 10:07 SRR1177996_R2.fastq
==========================================================
Finished on : Fri Jun 16 10:11:06 EDT 2017
0 hours, 3 minutes and 54 seconds elapsed.
==========================================================