----------------------- Need shift 5 command (have more than 9 arguments): ----------------------- ----------------------- Start of variable list: ----------------------- SCRIPT_DIR: /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/08a_DiffExp_2_HTSeq Dataset_DIR: /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion Dataset_Label: LZ GTF_Files_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files ANNOTATION_FILE: Exon_Only_Regions.gtf CONDITION_1_NAME: 30Inf_WT CONDITION_2_NAME: 30Inf_KO Lengths_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files/lengths GENE_LENGTHS_FILE: Exon_Only_Regions_Lengths.txt COUNT_DIR: RefSeq_Exon_Only_GTF OUTPUT_PREFIX: DiffExp_v2_Exonic_Only DiffExp_Index: DiffExp_2b COL_SUFFIX: Exonic_Only COUNT_PROGRAM: HTSeq ----------------------- End of variable list ----------------------- ========================================================== Starting on : Fri May 11 18:16:42 EDT 2018 Running on node : scc-kb7 Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/08a_DiffExp_2_HTSeq Current job ID : 6179558 Current job name : Step_08a_DiffExp_2b Task index number : undefined Parameter for multiple cores : 1 ========================================================== Change dir to scratch directory Print scratch directory location: /scratch/6179558.1.linga Loading required modules... ------------------------------------------ Sample_DIR: LZ_M19 Sample_ID: LZ_M19 Description: 30Inf_WT1 M_Num: M19 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: LZ_M19 Sample_DIR: LZ_M20 Sample_ID: LZ_M20 Description: 30Inf_WT2 M_Num: M20 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: LZ_M20 Sample_DIR: LZ_M21 Sample_ID: LZ_M21 Description: 30Inf_WT3 M_Num: M21 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: LZ_M21 Sample_DIR: LZ_M22 Sample_ID: LZ_M22 Description: 30Inf_WT4 M_Num: M22 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: LZ_M22 M_Num_Cond1_List: M19M20M21M22 ------------------------------------------ ------------------------------------------ Sample_DIR: LZ_M23 Sample_ID: LZ_M23 Description: 30Inf_KO1 M_Num: M23 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: LZ_M23 Sample_DIR: LZ_M24 Sample_ID: LZ_M24 Description: 30Inf_KO2 M_Num: M24 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: LZ_M24 Sample_DIR: LZ_M25 Sample_ID: LZ_M25 Description: 30Inf_KO3 M_Num: M25 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: LZ_M25 Sample_DIR: LZ_M26 Sample_ID: LZ_M26 Description: 30Inf_KO4 M_Num: M26 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: LZ_M26 M_Num_Cond2_List: M23M24M25M26 ------------------------------------------ ========================================================== Number of replicates in each condition: NUM_REP_CONDITION1: 4 NUM_REP_CONDITION1: 4 ========================================================== Renaming input count files Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) number of mapped reads 11685389 12679818 14258283 13330633 12722853 12557207 12799291 14340075 ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 244099 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO0.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO0_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244858 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO1.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO1_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245506 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO2.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO2_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245450 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO3.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO3_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244980 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT0.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT0_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244610 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT1.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT1_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244709 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT2.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT2_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245581 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT3.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT3_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 291285 May 11 18:16 /scratch/6179558.1.linga/Input/Exon_Only_Regions_Lengths.txt /scratch/6179558.1.linga/Input/30Inf_KO: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 May 11 18:16 . drwxr-xr-x 4 kkarri waxmanlab 4096 May 11 18:16 .. /scratch/6179558.1.linga/Input/30Inf_WT: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 May 11 18:16 . drwxr-xr-x 4 kkarri waxmanlab 4096 May 11 18:16 .. ========================================================== Starting to run my commands Printing Rscript command: Rscript differentialAnalysis.R 30Inf_WT 30Inf_KO 4 4 Exon_Only_Regions.gtf /scratch/6179558.1.linga/Input DiffExp_v2_Exonic_Only Exon_Only_Regions_Lengths.txt [1] "Arguments for differentialAnalysisDESeq.R:" [1] "30Inf_WT" [1] "30Inf_KO" [1] 4 [1] 4 [1] "Exon_Only_Regions.gtf" [1] "/scratch/6179558.1.linga/Input" [1] "DiffExp_v2_Exonic_Only" [1] "Exon_Only_Regions_Lengths.txt" load GTF file ... parse attributes ... [1] "output file is in: /scratch/6179558.1.linga/Input/DiffExp_v2_Exonic_Only_30Inf_WT_30Inf_KO.txt" ========================================================== Create SEGEX formatted file: Printing Rscript command: Rscript formatForSegex_ver3.R DiffExp_v2_Exonic_Only_30Inf_WT_30Inf_KO.txt 30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload 1 Exonic_Only ========================================================== Comparison_Info: 30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22 #---------------------------------------------------------------------------------- Running Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: Rscript Diff_Genes.R 30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_DESeq.txt 2 0.05 DESeq Exonic_Only'_'30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_DESeq.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "DESeq" [1] "count_method:" [1] "Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 10 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 10 7 [1] "Check out Up_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt!" [1] "Check out Down_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt!" Rscript Diff_Genes.R 30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_EdgeR.txt 2 0.05 EdgeR Exonic_Only'_'30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_EdgeR.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "EdgeR" [1] "count_method:" [1] "Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 44 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 51 7 [1] "Check out Up_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt!" [1] "Check out Down_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt!" #---------------------------------------------------------------------------------- Running Venn_Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Down_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt Down_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt Exonic_Only_Counting DiffExp_2b [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Down_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt" [1] "File2:" [1] "Down_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt" [1] "Subtitle:" [1] "Exonic_Only_Counting" [1] "DiffExp_Index:" [1] "DiffExp_2b" [1] "-----------------" [1] "Down.DESeq.Exonic_Only.HTSeq" [1] "Down.EdgeR.Exonic_Only.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Up_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt Up_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt Exonic_Only_Counting DiffExp_2b [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Up_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt" [1] "File2:" [1] "Up_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt" [1] "Subtitle:" [1] "Exonic_Only_Counting" [1] "DiffExp_Index:" [1] "DiffExp_2b" [1] "-----------------" [1] "Up.DESeq.Exonic_Only.HTSeq" [1] "Up.EdgeR.Exonic_Only.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- #---------------------------------------------------------------------------------- Merging Count.Table(s) into one text file #---------------------------------------------------------------------------------- ========================================================== Renaming the Differential_Expression_File ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 244099 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO0.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO0_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244858 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO1.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO1_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245506 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO2.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO2_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245450 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO3.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_KO3_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 3152682 May 11 18:18 /scratch/6179558.1.linga/Input/30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_DESeq.txt -rw-r--r-- 1 kkarri waxmanlab 3418849 May 11 18:18 /scratch/6179558.1.linga/Input/30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_EdgeR.txt -rw-r--r-- 1 kkarri waxmanlab 244980 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT0.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT0_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244610 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT1.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT1_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 244709 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT2.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT2_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 245581 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT3.out -rw-r--r-- 1 kkarri waxmanlab 9 May 11 18:16 /scratch/6179558.1.linga/Input/30Inf_WT3_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 308 May 11 18:18 /scratch/6179558.1.linga/Input/DiffExp_2b_Venn_Tables_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rw-r--r-- 1 kkarri waxmanlab 8544437 May 11 18:18 /scratch/6179558.1.linga/Input/DiffExp_v2_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rwxr-xr-x 1 kkarri waxmanlab 7394 May 11 18:16 /scratch/6179558.1.linga/Input/Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 1160 May 11 18:18 /scratch/6179558.1.linga/Input/Down_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rw-r--r-- 1 kkarri waxmanlab 5886 May 11 18:18 /scratch/6179558.1.linga/Input/Down_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rw-r--r-- 1 kkarri waxmanlab 291285 May 11 18:16 /scratch/6179558.1.linga/Input/Exon_Only_Regions_Lengths.txt -rw-r--r-- 1 kkarri waxmanlab 1059 May 11 18:18 /scratch/6179558.1.linga/Input/Up_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rw-r--r-- 1 kkarri waxmanlab 4417 May 11 18:18 /scratch/6179558.1.linga/Input/Up_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22.txt -rwxr-xr-x 1 kkarri waxmanlab 9553 May 11 18:16 /scratch/6179558.1.linga/Input/Venn_Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 36376 May 11 18:18 /scratch/6179558.1.linga/Input/Venn_Down.DESeq.Exonic_Only.HTSeq.Down.EdgeR.Exonic_Only.HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 35432 May 11 18:18 /scratch/6179558.1.linga/Input/Venn_Up.DESeq.Exonic_Only.HTSeq.Up.EdgeR.Exonic_Only.HTSeq.png -rwxr-xr-x 1 kkarri waxmanlab 3925 May 11 18:16 /scratch/6179558.1.linga/Input/formatForSegex_ver3.R /scratch/6179558.1.linga/Input/30Inf_KO: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 May 11 18:16 . drwxr-xr-x 4 kkarri waxmanlab 4096 May 11 18:18 .. /scratch/6179558.1.linga/Input/30Inf_WT: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 May 11 18:16 . drwxr-xr-x 4 kkarri waxmanlab 4096 May 11 18:18 .. ========================================================== List files in scratch total 19M drwx------ 3 kkarri waxmanlab 4.0K May 11 18:18 . drwxrwxrwt. 25 root root 168K May 11 18:16 .. -rw-r--r-- 1 kkarri waxmanlab 129 May 11 18:16 Condition_1.txt -rw-r--r-- 1 kkarri waxmanlab 129 May 11 18:16 Condition_2.txt -rw-r--r-- 1 kkarri waxmanlab 19M May 11 18:16 Exon_Only_Regions.gtf drwxr-xr-x 4 kkarri waxmanlab 4.0K May 11 18:18 Input -rwxr-xr-x 1 kkarri waxmanlab 16K May 11 18:16 differentialAnalysis.R ========================================================== Re-naming files in OUTPUT_DIR Need to append the COUNT_PROGRAM name to all output files List files in OUTPUT_DIR total 11M drwxr-sr-x 2 kkarri waxmanlab 32K May 11 18:18 . drwxr-sr-x 7 kkarri waxmanlab 32K May 11 18:16 .. -rw-r--r-- 1 kkarri waxmanlab 3.1M May 11 18:18 30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_DESeq_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 3.3M May 11 18:18 30Inf_KO_LZ_M23M24M25M26_vs_30Inf_WT_LZ_M19M20M21M22_DiffExp_v2_Exonic_Only_forSEGEXUpload_EdgeR_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 308 May 11 18:18 DiffExp_2b_Venn_Tables_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 8.2M May 11 18:18 DiffExp_v2_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 1.2K May 11 18:18 Down_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 5.8K May 11 18:18 Down_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 1.1K May 11 18:18 Up_Genes_DESeq_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 4.4K May 11 18:18 Up_Genes_EdgeR_Exonic_Only_30Inf_KO_LZ_M23M24M25M26_30Inf_WT_LZ_M19M20M21M22_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 36K May 11 18:18 Venn_Down.DESeq.Exonic_Only.HTSeq.Down.EdgeR.Exonic_Only.HTSeq_HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 35K May 11 18:18 Venn_Up.DESeq.Exonic_Only.HTSeq.Up.EdgeR.Exonic_Only.HTSeq_HTSeq.png ========================================================== ========================================================== Finished on : Fri May 11 18:18:42 EDT 2018 2 minutes and 0 seconds elapsed. ==========================================================