========================================================== Starting on : Wed Oct 10 10:49:13 EDT 2018 Running on node : scc-ka6 Current job ID : 8756140 Current job name : sra_fastq Task index number : ========================================================== Converting sra to fastq Text read from file: SRR6575147 Read 154426 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575147 Written 154426 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575147 Text read from file: SRR6575148 Read 301089 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575148 Written 301089 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575148 Text read from file: SRR6575149 Read 40761 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575149 Written 40761 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575149 Text read from file: SRR6575150 Read 90860 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575150 Written 90860 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575150 Text read from file: SRR6575151 Read 90191 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575151 Written 90191 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575151 Text read from file: SRR6575152 Read 776200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575152 Written 776200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575152 Text read from file: SRR6575153 Read 698124 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575153 Written 698124 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575153 Text read from file: SRR6575154 Read 145329 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575154 Written 145329 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575154 Text read from file: SRR6575155 Read 146954 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575155 Written 146954 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575155 Text read from file: SRR6575156 Read 765744 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575156 Written 765744 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575156 Text read from file: SRR6575157 Read 689917 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575157 Written 689917 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575157 Text read from file: SRR6575158 Read 674459 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575158 Written 674459 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575158 Text read from file: SRR6575159 Read 596787 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575159 Written 596787 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575159 Text read from file: SRR6575160 Read 37675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575160 Written 37675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575160 Text read from file: SRR6575161 Read 224081 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575161 Written 224081 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575161 Text read from file: SRR6575162 Read 222538 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575162 Written 222538 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575162 Text read from file: SRR6575163 Read 119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575163 Written 119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575163 Text read from file: SRR6575164 Read 121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575164 Written 121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575164 Text read from file: SRR6575165 Read 348173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575165 Written 348173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575165 Text read from file: SRR6575166 Read 315291 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575166 Written 315291 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575166 Text read from file: SRR6575167 Read 262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575167 Written 262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575167 Text read from file: SRR6575168 Read 339 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575168 Written 339 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575168 Text read from file: SRR6575169 Read 227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575169 Written 227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575169 Text read from file: SRR6575170 Read 265 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575170 Written 265 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575170 Text read from file: SRR6575171 Read 44638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575171 Written 44638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575171 Text read from file: SRR6575172 Read 244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575172 Written 244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575172 Text read from file: SRR6575173 Read 273 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575173 Written 273 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575173 Text read from file: SRR6575174 Read 349701 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575174 Written 349701 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575174 Text read from file: SRR6575175 Read 491135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575175 Written 491135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575175 Text read from file: SRR6575176 Read 918322 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575176 Written 918322 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575176 Text read from file: SRR6575177 Read 827723 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575177 Written 827723 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575177 Text read from file: SRR6575178 Read 856521 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575178 Written 856521 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575178 Text read from file: SRR6575179 Read 772735 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575179 Written 772735 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575179 Text read from file: SRR6575180 Read 500065 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575180 Written 500065 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575180 Text read from file: SRR6575181 Read 463071 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575181 Written 463071 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575181 Text read from file: SRR6575182 Read 41519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575182 Written 41519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575182 Text read from file: SRR6575183 Read 145919 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575183 Written 145919 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575183 Text read from file: SRR6575184 Read 145044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575184 Written 145044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575184 Text read from file: SRR6575185 Read 185295 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575185 Written 185295 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575185 Text read from file: SRR6575186 Read 180983 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575186 Written 180983 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575186 Text read from file: SRR6575187 Read 250 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575187 Written 250 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575187 Text read from file: SRR6575188 Read 277 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575188 Written 277 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575188 Text read from file: SRR6575189 Read 223358 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575189 Written 223358 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575189 Text read from file: SRR6575190 Read 222203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575190 Written 222203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575190 Text read from file: SRR6575191 Read 209993 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575191 Written 209993 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575191 Text read from file: SRR6575192 Read 209861 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575192 Written 209861 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575192 Text read from file: SRR6575193 Read 431296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575193 Written 431296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575193 Text read from file: SRR6575194 Read 1800 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575194 Written 1800 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575194 Text read from file: SRR6575195 Read 844 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575195 Written 844 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575195 Text read from file: SRR6575196 Read 590 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575196 Written 590 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575196 Text read from file: SRR6575197 Read 683 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575197 Written 683 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575197 Text read from file: SRR6575198 Read 757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575198 Written 757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575198 Text read from file: SRR6575199 Read 570 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575199 Written 570 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575199 Text read from file: SRR6575200 Read 136724 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575200 Written 136724 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575200 Text read from file: SRR6575201 Read 136925 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575201 Written 136925 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575201 Text read from file: SRR6575202 Read 848457 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575202 Written 848457 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575202 Text read from file: SRR6575203 Read 750925 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575203 Written 750925 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575203 Text read from file: SRR6575204 Read 399303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575204 Written 399303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575204 Text read from file: SRR6575205 Read 241 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575205 Written 241 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575205 Text read from file: SRR6575206 Read 270 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575206 Written 270 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575206 Text read from file: SRR6575207 Read 543967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575207 Written 543967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575207 Text read from file: SRR6575208 Read 507674 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575208 Written 507674 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575208 Text read from file: SRR6575209 Read 288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575209 Written 288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575209 Text read from file: SRR6575210 Read 301 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575210 Written 301 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575210 Text read from file: SRR6575211 Read 786284 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575211 Written 786284 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575211 Text read from file: SRR6575212 Read 701992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575212 Written 701992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575212 Text read from file: SRR6575213 Read 712248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575213 Written 712248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575213 Text read from file: SRR6575214 Read 660339 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575214 Written 660339 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575214 Text read from file: SRR6575215 Read 525467 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575215 Written 525467 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575215 Text read from file: SRR6575216 Read 203685 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575216 Written 203685 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575216 Text read from file: SRR6575217 Read 202108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575217 Written 202108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575217 Text read from file: SRR6575218 Read 268 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575218 Written 268 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575218 Text read from file: SRR6575219 Read 257 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575219 Written 257 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575219 Text read from file: SRR6575220 Read 320 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575220 Written 320 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575220 Text read from file: SRR6575221 Read 380 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575221 Written 380 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575221 Text read from file: SRR6575222 Read 323 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575222 Written 323 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575222 Text read from file: SRR6575223 Read 323 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575223 Written 323 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575223 Text read from file: SRR6575224 Read 197437 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575224 Written 197437 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575224 Text read from file: SRR6575225 Read 196744 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575225 Written 196744 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575225 Text read from file: SRR6575226 Read 479514 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575226 Written 479514 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575226 Text read from file: SRR6575227 Read 183110 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575227 Written 183110 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575227 Text read from file: SRR6575228 Read 185576 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575228 Written 185576 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575228 Text read from file: SRR6575229 Read 778956 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575229 Written 778956 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575229 Text read from file: SRR6575230 Read 720387 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575230 Written 720387 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575230 Text read from file: SRR6575231 Read 234 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575231 Written 234 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575231 Text read from file: SRR6575232 Read 259 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575232 Written 259 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575232 Text read from file: SRR6575233 Read 538664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575233 Written 538664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575233 Text read from file: SRR6575234 Read 508669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575234 Written 508669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575234 Text read from file: SRR6575235 Read 575216 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575235 Written 575216 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575235 Text read from file: SRR6575236 Read 535038 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575236 Written 535038 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575236 Text read from file: SRR6575237 Read 38296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575237 Written 38296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575237 Text read from file: SRR6575238 Read 712221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575238 Written 712221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575238 Text read from file: SRR6575239 Read 658537 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575239 Written 658537 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575239 Text read from file: SRR6575240 Read 480225 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575240 Written 480225 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575240 Text read from file: SRR6575241 Read 454169 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575241 Written 454169 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575241 Text read from file: SRR6575242 Read 261217 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575242 Written 261217 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575242 Text read from file: SRR6575243 Read 258757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575243 Written 258757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575243 Text read from file: SRR6575244 Read 207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575244 Written 207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575244 Text read from file: SRR6575245 Read 273 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575245 Written 273 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575245 Text read from file: SRR6575246 Read 122 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575246 Written 122 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575246 Text read from file: SRR6575247 Read 151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575247 Written 151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575247 Text read from file: SRR6575248 Read 36663 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575248 Written 36663 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575248 Text read from file: SRR6575249 Read 374 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575249 Written 374 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575249 Text read from file: SRR6575250 Read 324 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575250 Written 324 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575250 Text read from file: SRR6575251 Read 375 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575251 Written 375 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575251 Text read from file: SRR6575252 Read 443 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575252 Written 443 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575252 Text read from file: SRR6575253 Read 505712 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575253 Written 505712 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575253 Text read from file: SRR6575254 Read 480366 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575254 Written 480366 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575254 Text read from file: SRR6575255 Read 113853 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575255 Written 113853 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575255 Text read from file: SRR6575256 Read 114478 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575256 Written 114478 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575256 Text read from file: SRR6575257 Read 908586 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575257 Written 908586 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575257 Text read from file: SRR6575258 Read 835639 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575258 Written 835639 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575258 Text read from file: SRR6575259 Read 485012 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575259 Written 485012 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575259 Text read from file: SRR6575260 Read 15347 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575260 Written 15347 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575260 Text read from file: SRR6575261 Read 362935 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575261 Written 362935 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575261 Text read from file: SRR6575262 Read 290461 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575262 Written 290461 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575262 Text read from file: SRR6575263 Read 795891 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575263 Written 795891 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575263 Text read from file: SRR6575264 Read 719700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575264 Written 719700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575264 Text read from file: SRR6575265 Read 10427 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575265 Written 10427 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575265 Text read from file: SRR6575266 Read 9146 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575266 Written 9146 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575266 Text read from file: SRR6575267 Read 111 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575267 Written 111 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575267 Text read from file: SRR6575268 Read 121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575268 Written 121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575268 Text read from file: SRR6575269 Read 420 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575269 Written 420 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575269 Text read from file: SRR6575270 Read 405 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575270 Written 405 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575270 Text read from file: SRR6575271 Read 14068 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575271 Written 14068 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575271 Text read from file: SRR6575272 Read 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575272 Written 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575272 Text read from file: SRR6575273 Read 302 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575273 Written 302 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575273 Text read from file: SRR6575274 Read 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575274 Written 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575274 Text read from file: SRR6575275 Read 219 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575275 Written 219 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575275 Text read from file: SRR6575276 Read 244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575276 Written 244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575276 Text read from file: SRR6575277 Read 246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575277 Written 246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575277 Text read from file: SRR6575278 Read 3476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575278 Written 3476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575278 Text read from file: SRR6575279 Read 3242 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575279 Written 3242 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575279 Text read from file: SRR6575280 Read 189906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575280 Written 189906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575280 Text read from file: SRR6575281 Read 181581 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575281 Written 181581 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575281 Text read from file: SRR6575282 Read 38455 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575282 Written 38455 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575282 Text read from file: SRR6575283 Read 14131 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575283 Written 14131 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575283 Text read from file: SRR6575284 Read 13243 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575284 Written 13243 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575284 Text read from file: SRR6575285 Read 184918 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575285 Written 184918 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575285 Text read from file: SRR6575286 Read 182589 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575286 Written 182589 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575286 Text read from file: SRR6575287 Read 135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575287 Written 135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575287 Text read from file: SRR6575288 Read 128 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575288 Written 128 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575288 Text read from file: SRR6575289 Read 182 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575289 Written 182 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575289 Text read from file: SRR6575290 Read 205 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575290 Written 205 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575290 Text read from file: SRR6575291 Read 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575291 Written 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575291 Text read from file: SRR6575292 Read 187 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575292 Written 187 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575292 Text read from file: SRR6575293 Read 36359 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575293 Written 36359 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575293 Text read from file: SRR6575294 Read 195 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575294 Written 195 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575294 Text read from file: SRR6575295 Read 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575295 Written 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575295 Text read from file: SRR6575296 Read 266 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575296 Written 266 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575296 Text read from file: SRR6575297 Read 303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575297 Written 303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575297 Text read from file: SRR6575298 Read 213 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575298 Written 213 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575298 Text read from file: SRR6575299 Read 220 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575299 Written 220 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575299 Text read from file: SRR6575300 Read 7143 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575300 Written 7143 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575300 Text read from file: SRR6575301 Read 6354 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575301 Written 6354 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575301 Text read from file: SRR6575302 Read 860828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575302 Written 860828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575302 Text read from file: SRR6575303 Read 791763 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575303 Written 791763 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575303 Text read from file: SRR6575304 Read 23594 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575304 Written 23594 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575304 Text read from file: SRR6575305 Read 245 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575305 Written 245 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575305 Text read from file: SRR6575306 Read 298 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575306 Written 298 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575306 Text read from file: SRR6575307 Read 185171 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575307 Written 185171 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575307 Text read from file: SRR6575308 Read 175114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575308 Written 175114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575308 Text read from file: SRR6575309 Read 239141 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575309 Written 239141 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575309 Text read from file: SRR6575310 Read 222959 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575310 Written 222959 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575310 Text read from file: SRR6575311 Read 467725 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575311 Written 467725 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575311 Text read from file: SRR6575312 Read 417198 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575312 Written 417198 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575312 Text read from file: SRR6575313 Read 415 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575313 Written 415 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575313 Text read from file: SRR6575314 Read 474 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575314 Written 474 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575314 Text read from file: SRR6575315 Read 23091 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575315 Written 23091 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575315 Text read from file: SRR6575316 Read 176260 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575316 Written 176260 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575316 Text read from file: SRR6575317 Read 144217 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575317 Written 144217 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575317 Text read from file: SRR6575318 Read 534 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575318 Written 534 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575318 Text read from file: SRR6575319 Read 583 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575319 Written 583 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575319 Text read from file: SRR6575320 Read 497 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575320 Written 497 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575320 Text read from file: SRR6575321 Read 528 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575321 Written 528 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575321 Text read from file: SRR6575322 Read 150396 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575322 Written 150396 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575322 Text read from file: SRR6575323 Read 128252 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575323 Written 128252 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575323 Text read from file: SRR6575324 Read 589531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575324 Written 589531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575324 Text read from file: SRR6575325 Read 515580 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575325 Written 515580 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575325 Text read from file: SRR6575326 Read 236692 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575326 Written 236692 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575326 Text read from file: SRR6575327 Read 622257 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575327 Written 622257 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575327 Text read from file: SRR6575328 Read 585369 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575328 Written 585369 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575328 Text read from file: SRR6575329 Read 182609 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575329 Written 182609 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575329 Text read from file: SRR6575330 Read 158934 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575330 Written 158934 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575330 Text read from file: SRR6575331 Read 249 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575331 Written 249 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575331 Text read from file: SRR6575332 Read 278 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575332 Written 278 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575332 Text read from file: SRR6575333 Read 223269 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575333 Written 223269 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575333 Text read from file: SRR6575334 Read 208531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575334 Written 208531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575334 Text read from file: SRR6575335 Read 792618 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575335 Written 792618 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575335 Text read from file: SRR6575336 Read 705395 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575336 Written 705395 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575336 Text read from file: SRR6575337 Read 218139 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575337 Written 218139 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575337 Text read from file: SRR6575338 Read 153 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575338 Written 153 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575338 Text read from file: SRR6575339 Read 181 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575339 Written 181 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575339 Text read from file: SRR6575340 Read 142 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575340 Written 142 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575340 Text read from file: SRR6575341 Read 138 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575341 Written 138 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575341 Text read from file: SRR6575342 Read 237 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575342 Written 237 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575342 Text read from file: SRR6575343 Read 354 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575343 Written 354 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575343 Text read from file: SRR6575344 Read 712033 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575344 Written 712033 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575344 Text read from file: SRR6575345 Read 641595 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575345 Written 641595 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575345 Text read from file: SRR6575346 Read 192758 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575346 Written 192758 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575346 Text read from file: SRR6575347 Read 178992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575347 Written 178992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575347 Text read from file: SRR6575348 Read 328579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575348 Written 328579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575348 Text read from file: SRR6575349 Read 161 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575349 Written 161 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575349 Text read from file: SRR6575350 Read 203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575350 Written 203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575350 Text read from file: SRR6575351 Read 228307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575351 Written 228307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575351 Text read from file: SRR6575352 Read 222839 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575352 Written 222839 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575352 Text read from file: SRR6575353 Read 142 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575353 Written 142 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575353 Text read from file: SRR6575354 Read 179 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575354 Written 179 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575354 Text read from file: SRR6575355 Read 612734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575355 Written 612734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575355 Text read from file: SRR6575356 Read 558325 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575356 Written 558325 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575356 Text read from file: SRR6575357 Read 159 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575357 Written 159 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575357 Text read from file: SRR6575358 Read 222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575358 Written 222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575358 Text read from file: SRR6575359 Read 298245 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575359 Written 298245 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575359 Text read from file: SRR6575360 Read 227025 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575360 Written 227025 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575360 Text read from file: SRR6575361 Read 219680 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575361 Written 219680 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575361 Text read from file: SRR6575362 Read 757652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575362 Written 757652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575362 Text read from file: SRR6575363 Read 682491 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575363 Written 682491 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575363 Text read from file: SRR6575364 Read 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575364 Written 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575364 Text read from file: SRR6575365 Read 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575365 Written 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575365 Text read from file: SRR6575366 Read 293 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575366 Written 293 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575366 Text read from file: SRR6575367 Read 307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575367 Written 307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575367 Text read from file: SRR6575368 Read 192 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575368 Written 192 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575368 Text read from file: SRR6575369 Read 248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575369 Written 248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575369 Text read from file: SRR6575370 Read 270088 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575370 Written 270088 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575370 Text read from file: SRR6575371 Read 37694 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575371 Written 37694 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575371 Text read from file: SRR6575372 Read 401 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575372 Written 401 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575372 Text read from file: SRR6575373 Read 397 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575373 Written 397 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575373 Text read from file: SRR6575374 Read 618092 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575374 Written 618092 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575374 Text read from file: SRR6575375 Read 556827 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575375 Written 556827 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575375 Text read from file: SRR6575376 Read 757538 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575376 Written 757538 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575376 Text read from file: SRR6575377 Read 684365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575377 Written 684365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575377 Text read from file: SRR6575378 Read 272 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575378 Written 272 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575378 Text read from file: SRR6575379 Read 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575379 Written 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575379 Text read from file: SRR6575380 Read 385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575380 Written 385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575380 Text read from file: SRR6575381 Read 363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575381 Written 363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575381 Text read from file: SRR6575382 Read 35224 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575382 Written 35224 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575382 Text read from file: SRR6575383 Read 718125 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575383 Written 718125 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575383 Text read from file: SRR6575384 Read 668720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575384 Written 668720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575384 Text read from file: SRR6575385 Read 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575385 Written 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575385 Text read from file: SRR6575386 Read 370 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575386 Written 370 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575386 Text read from file: SRR6575387 Read 577890 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575387 Written 577890 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575387 Text read from file: SRR6575388 Read 529052 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575388 Written 529052 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575388 Text read from file: SRR6575389 Read 615085 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575389 Written 615085 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575389 Text read from file: SRR6575390 Read 562927 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575390 Written 562927 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575390 Text read from file: SRR6575391 Read 186 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575391 Written 186 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575391 Text read from file: SRR6575392 Read 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575392 Written 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575392 Text read from file: SRR6575393 Read 451814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575393 Written 451814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575393 Text read from file: SRR6575394 Read 316 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575394 Written 316 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575394 Text read from file: SRR6575395 Read 302 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575395 Written 302 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575395 Text read from file: SRR6575396 Read 356759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575396 Written 356759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575396 Text read from file: SRR6575397 Read 330288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575397 Written 330288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575397 Text read from file: SRR6575398 Read 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575398 Written 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575398 Text read from file: SRR6575399 Read 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575399 Written 330 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575399 Text read from file: SRR6575400 Read 224620 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575400 Written 224620 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575400 Text read from file: SRR6575401 Read 206303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575401 Written 206303 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575401 Text read from file: SRR6575402 Read 1482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575402 Written 1482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575402 Text read from file: SRR6575403 Read 1565 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575403 Written 1565 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575403 Text read from file: SRR6575404 Read 417547 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575404 Written 417547 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575404 Text read from file: SRR6575405 Read 761446 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575405 Written 761446 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575405 Text read from file: SRR6575406 Read 677831 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575406 Written 677831 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575406 Text read from file: SRR6575407 Read 261193 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575407 Written 261193 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575407 Text read from file: SRR6575408 Read 255179 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575408 Written 255179 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575408 Text read from file: SRR6575409 Read 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575409 Written 365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575409 Text read from file: SRR6575410 Read 321 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575410 Written 321 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575410 Text read from file: SRR6575411 Read 221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575411 Written 221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575411 Text read from file: SRR6575412 Read 289 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575412 Written 289 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575412 Text read from file: SRR6575413 Read 204 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575413 Written 204 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575413 Text read from file: SRR6575414 Read 236 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575414 Written 236 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575414 Text read from file: SRR6575415 Read 96419 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575415 Written 96419 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575415 Text read from file: SRR6575416 Read 229244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575416 Written 229244 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575416 Text read from file: SRR6575417 Read 221203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575417 Written 221203 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575417 Text read from file: SRR6575418 Read 258044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575418 Written 258044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575418 Text read from file: SRR6575419 Read 245704 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575419 Written 245704 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575419 Text read from file: SRR6575420 Read 358 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575420 Written 358 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575420 Text read from file: SRR6575421 Read 351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575421 Written 351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575421 Text read from file: SRR6575422 Read 233 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575422 Written 233 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575422 Text read from file: SRR6575423 Read 290 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575423 Written 290 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575423 Text read from file: SRR6575424 Read 118 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575424 Written 118 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575424 Text read from file: SRR6575425 Read 118 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575425 Written 118 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575425 Text read from file: SRR6575426 Read 89856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575426 Written 89856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575426 Text read from file: SRR6575427 Read 230828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575427 Written 230828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575427 Text read from file: SRR6575428 Read 218868 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575428 Written 218868 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575428 Text read from file: SRR6575429 Read 937430 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575429 Written 937430 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575429 Text read from file: SRR6575430 Read 832867 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575430 Written 832867 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575430 Text read from file: SRR6575431 Read 390 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575431 Written 390 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575431 Text read from file: SRR6575432 Read 381 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575432 Written 381 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575432 Text read from file: SRR6575433 Read 250 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575433 Written 250 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575433 Text read from file: SRR6575434 Read 280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575434 Written 280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575434 Text read from file: SRR6575435 Read 457 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575435 Written 457 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575435 Text read from file: SRR6575436 Read 398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575436 Written 398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575436 Text read from file: SRR6575437 Read 71648 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575437 Written 71648 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575437 Text read from file: SRR6575438 Read 501 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575438 Written 501 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575438 Text read from file: SRR6575439 Read 482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575439 Written 482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575439 Text read from file: SRR6575440 Read 163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575440 Written 163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575440 Text read from file: SRR6575441 Read 193 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575441 Written 193 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575441 Text read from file: SRR6575442 Read 414 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575442 Written 414 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575442 Text read from file: SRR6575443 Read 404 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575443 Written 404 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575443 Text read from file: SRR6575444 Read 374378 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575444 Written 374378 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575444 Text read from file: SRR6575445 Read 347433 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575445 Written 347433 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575445 Text read from file: SRR6575446 Read 177 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575446 Written 177 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575446 Text read from file: SRR6575447 Read 229 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575447 Written 229 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575447 Text read from file: SRR6575448 Read 68856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575448 Written 68856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575448 Text read from file: SRR6575449 Read 280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575449 Written 280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575449 Text read from file: SRR6575450 Read 272 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575450 Written 272 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575450 Text read from file: SRR6575451 Read 333 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575451 Written 333 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575451 Text read from file: SRR6575452 Read 268 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575452 Written 268 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575452 Text read from file: SRR6575453 Read 208 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575453 Written 208 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575453 Text read from file: SRR6575454 Read 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575454 Written 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575454 Text read from file: SRR6575455 Read 141638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575455 Written 141638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575455 Text read from file: SRR6575456 Read 130707 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575456 Written 130707 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575456 Text read from file: SRR6575457 Read 209 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575457 Written 209 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575457 Text read from file: SRR6575458 Read 228 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575458 Written 228 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575458 Text read from file: SRR6575459 Read 224856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575459 Written 224856 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575459 Text read from file: SRR6575460 Read 221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575460 Written 221 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575460 Text read from file: SRR6575461 Read 263 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575461 Written 263 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575461 Text read from file: SRR6575462 Read 299 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575462 Written 299 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575462 Text read from file: SRR6575463 Read 313 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575463 Written 313 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575463 Text read from file: SRR6575464 Read 236 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575464 Written 236 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575464 Text read from file: SRR6575465 Read 275 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575465 Written 275 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575465 Text read from file: SRR6575466 Read 133 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575466 Written 133 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575466 Text read from file: SRR6575467 Read 108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575467 Written 108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575467 Text read from file: SRR6575468 Read 215 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575468 Written 215 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575468 Text read from file: SRR6575469 Read 225 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575469 Written 225 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575469 Text read from file: SRR6575470 Read 208014 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575470 Written 208014 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575470 Text read from file: SRR6575471 Read 157 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575471 Written 157 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575471 Text read from file: SRR6575472 Read 166 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575472 Written 166 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575472 Text read from file: SRR6575473 Read 163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575473 Written 163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575473 Text read from file: SRR6575474 Read 173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575474 Written 173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575474 Text read from file: SRR6575475 Read 191 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575475 Written 191 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575475 Text read from file: SRR6575476 Read 210 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575476 Written 210 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575476 Text read from file: SRR6575477 Read 248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575477 Written 248 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575477 Text read from file: SRR6575478 Read 295 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575478 Written 295 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575478 Text read from file: SRR6575479 Read 170 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575479 Written 170 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575479 Text read from file: SRR6575480 Read 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575480 Written 201 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575480 Text read from file: SRR6575481 Read 478980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575481 Written 478980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575481 Text read from file: SRR6575482 Read 184647 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575482 Written 184647 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575482 Text read from file: SRR6575483 Read 259 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575483 Written 259 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575483 Text read from file: SRR6575484 Read 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575484 Written 254 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575484 Text read from file: SRR6575485 Read 197 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575485 Written 197 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575485 Text read from file: SRR6575486 Read 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575486 Written 240 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575486 Text read from file: SRR6575487 Read 247 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575487 Written 247 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575487 Text read from file: SRR6575488 Read 285 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575488 Written 285 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575488 Text read from file: SRR6575489 Read 242513 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575489 Written 242513 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575489 Text read from file: SRR6575490 Read 239403 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575490 Written 239403 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575490 Text read from file: SRR6575491 Read 256394 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575491 Written 256394 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575491 Text read from file: SRR6575492 Read 245918 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575492 Written 245918 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575492 Text read from file: SRR6575493 Read 170955 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575493 Written 170955 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575493 Text read from file: SRR6575494 Read 406473 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575494 Written 406473 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575494 Text read from file: SRR6575495 Read 380055 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575495 Written 380055 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575495 Text read from file: SRR6575496 Read 461989 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575496 Written 461989 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575496 Text read from file: SRR6575497 Read 434449 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575497 Written 434449 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575497 Text read from file: SRR6575498 Read 415 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575498 Written 415 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575498 Text read from file: SRR6575499 Read 453 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575499 Written 453 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575499 Text read from file: SRR6575500 Read 4662 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575500 Written 4662 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575500 Text read from file: SRR6575501 Read 4279 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575501 Written 4279 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575501 Text read from file: SRR6575502 Read 257298 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575502 Written 257298 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575502 Text read from file: SRR6575503 Read 249007 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575503 Written 249007 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575503 Text read from file: SRR6575504 Read 259378 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575504 Written 259378 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575504 Text read from file: SRR6575505 Read 769 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575505 Written 769 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575505 Text read from file: SRR6575506 Read 706 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575506 Written 706 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575506 Text read from file: SRR6575507 Read 519342 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575507 Written 519342 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575507 Text read from file: SRR6575508 Read 473113 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575508 Written 473113 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575508 Text read from file: SRR6575509 Read 1132729 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575509 Written 1132729 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575509 Text read from file: SRR6575510 Read 1037710 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575510 Written 1037710 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575510 Text read from file: SRR6575511 Read 1059642 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575511 Written 1059642 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575511 Text read from file: SRR6575512 Read 957513 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575512 Written 957513 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575512 Text read from file: SRR6575513 Read 911566 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575513 Written 911566 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575513 Text read from file: SRR6575514 Read 828889 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575514 Written 828889 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575514 Text read from file: SRR6575515 Read 235234 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575515 Written 235234 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575515 Text read from file: SRR6575516 Read 849394 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575516 Written 849394 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575516 Text read from file: SRR6575517 Read 790269 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575517 Written 790269 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575517 Text read from file: SRR6575518 Read 327963 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575518 Written 327963 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575518 Text read from file: SRR6575519 Read 328822 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575519 Written 328822 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575519 Text read from file: SRR6575520 Read 71560 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575520 Written 71560 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575520 Text read from file: SRR6575521 Read 77075 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575521 Written 77075 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575521 Text read from file: SRR6575522 Read 317812 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575522 Written 317812 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575522 Text read from file: SRR6575523 Read 298926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575523 Written 298926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575523 Text read from file: SRR6575524 Read 323492 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575524 Written 323492 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575524 Text read from file: SRR6575525 Read 320213 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575525 Written 320213 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575525 Text read from file: SRR6575526 Read 380009 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575526 Written 380009 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575526 Text read from file: SRR6575527 Read 725489 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575527 Written 725489 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575527 Text read from file: SRR6575528 Read 706393 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575528 Written 706393 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575528 Text read from file: SRR6575529 Read 986399 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575529 Written 986399 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575529 Text read from file: SRR6575530 Read 795431 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575530 Written 795431 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575530 Text read from file: SRR6575531 Read 925327 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575531 Written 925327 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575531 Text read from file: SRR6575532 Read 868233 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575532 Written 868233 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575532 Text read from file: SRR6575533 Read 263801 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575533 Written 263801 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575533 Text read from file: SRR6575534 Read 263629 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575534 Written 263629 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575534 Text read from file: SRR6575535 Read 280764 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575535 Written 280764 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575535 Text read from file: SRR6575536 Read 288276 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575536 Written 288276 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575536 Text read from file: SRR6575537 Read 347385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575537 Written 347385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575537 Text read from file: SRR6575538 Read 1091630 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575538 Written 1091630 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575538 Text read from file: SRR6575539 Read 1017433 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575539 Written 1017433 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575539 Text read from file: SRR6575540 Read 470529 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575540 Written 470529 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575540 Text read from file: SRR6575541 Read 462363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575541 Written 462363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575541 Text read from file: SRR6575542 Read 383612 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575542 Written 383612 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575542 Text read from file: SRR6575543 Read 379608 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575543 Written 379608 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575543 Text read from file: SRR6575544 Read 343442 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575544 Written 343442 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575544 Text read from file: SRR6575545 Read 343995 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575545 Written 343995 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575545 Text read from file: SRR6575546 Read 559051 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575546 Written 559051 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575546 Text read from file: SRR6575547 Read 532923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575547 Written 532923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575547 Text read from file: SRR6575548 Read 159607 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575548 Written 159607 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575548 Text read from file: SRR6575549 Read 254140 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575549 Written 254140 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575549 Text read from file: SRR6575550 Read 250957 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575550 Written 250957 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575550 Text read from file: SRR6575551 Read 235224 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575551 Written 235224 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575551 Text read from file: SRR6575552 Read 233970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575552 Written 233970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575552 Text read from file: SRR6575553 Read 244796 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575553 Written 244796 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575553 Text read from file: SRR6575554 Read 242747 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575554 Written 242747 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575554 Text read from file: SRR6575555 Read 324902 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575555 Written 324902 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575555 Text read from file: SRR6575556 Read 326926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575556 Written 326926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575556 Text read from file: SRR6575557 Read 214625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575557 Written 214625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575557 Text read from file: SRR6575558 Read 217958 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575558 Written 217958 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575558 Text read from file: SRR6575559 Read 148333 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575559 Written 148333 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575559 Text read from file: SRR6575560 Read 339701 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575560 Written 339701 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575560 Text read from file: SRR6575561 Read 331262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575561 Written 331262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575561 Text read from file: SRR6575562 Read 1140579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575562 Written 1140579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575562 Text read from file: SRR6575563 Read 1073418 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575563 Written 1073418 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575563 Text read from file: SRR6575564 Read 1078613 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575564 Written 1078613 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575564 Text read from file: SRR6575565 Read 1018905 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575565 Written 1018905 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575565 Text read from file: SRR6575566 Read 390169 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575566 Written 390169 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575566 Text read from file: SRR6575567 Read 385604 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575567 Written 385604 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575567 Text read from file: SRR6575568 Read 435739 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575568 Written 435739 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575568 Text read from file: SRR6575569 Read 441140 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575569 Written 441140 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575569 Text read from file: SRR6575570 Read 370402 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575570 Written 370402 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575570 Text read from file: SRR6575571 Read 310341 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575571 Written 310341 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575571 Text read from file: SRR6575572 Read 310899 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575572 Written 310899 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575572 Text read from file: SRR6575573 Read 1232837 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575573 Written 1232837 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575573 Text read from file: SRR6575574 Read 1133548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575574 Written 1133548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575574 Text read from file: SRR6575575 Read 650062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575575 Written 650062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575575 Text read from file: SRR6575576 Read 634151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575576 Written 634151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575576 Text read from file: SRR6575577 Read 1241806 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575577 Written 1241806 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575577 Text read from file: SRR6575578 Read 1148967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575578 Written 1148967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575578 Text read from file: SRR6575579 Read 1205596 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575579 Written 1205596 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575579 Text read from file: SRR6575580 Read 1097731 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575580 Written 1097731 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575580 Text read from file: SRR6575581 Read 335446 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575581 Written 335446 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575581 Text read from file: SRR6575582 Read 582912 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575582 Written 582912 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575582 Text read from file: SRR6575583 Read 570700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575583 Written 570700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575583 Text read from file: SRR6575584 Read 600262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575584 Written 600262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575584 Text read from file: SRR6575585 Read 589107 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575585 Written 589107 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575585 Text read from file: SRR6575586 Read 391124 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575586 Written 391124 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575586 Text read from file: SRR6575587 Read 397632 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575587 Written 397632 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575587 Text read from file: SRR6575588 Read 1316106 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575588 Written 1316106 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575588 Text read from file: SRR6575589 Read 1216947 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575589 Written 1216947 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575589 Text read from file: SRR6575590 Read 1613659 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575590 Written 1613659 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575590 Text read from file: SRR6575591 Read 1464985 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575591 Written 1464985 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575591 Text read from file: SRR6575592 Read 589482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575592 Written 589482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575592 Text read from file: SRR6575593 Read 447734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575593 Written 447734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575593 Text read from file: SRR6575594 Read 789939 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575594 Written 789939 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575594 Text read from file: SRR6575595 Read 731365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575595 Written 731365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575595 Text read from file: SRR6575596 Read 462535 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575596 Written 462535 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575596 Text read from file: SRR6575597 Read 459886 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575597 Written 459886 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575597 Text read from file: SRR6575598 Read 458324 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575598 Written 458324 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575598 Text read from file: SRR6575599 Read 461663 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575599 Written 461663 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575599 Text read from file: SRR6575600 Read 408691 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575600 Written 408691 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575600 Text read from file: SRR6575601 Read 398192 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575601 Written 398192 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575601 Text read from file: SRR6575602 Read 434921 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575602 Written 434921 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575602 Text read from file: SRR6575603 Read 426278 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575603 Written 426278 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575603 Text read from file: SRR6575604 Read 401070 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575604 Written 401070 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575604 Text read from file: SRR6575605 Read 1338519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575605 Written 1338519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575605 Text read from file: SRR6575606 Read 1360472 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575606 Written 1360472 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575606 Text read from file: SRR6575607 Read 2855860 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575607 Written 2855860 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575607 Text read from file: SRR6575608 Read 2717533 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575608 Written 2717533 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575608 Text read from file: SRR6575609 Read 4512992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575609 Written 4512992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575609 Text read from file: SRR6575610 Read 4136133 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575610 Written 4136133 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575610 Text read from file: SRR6575611 Read 1112115 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575611 Written 1112115 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575611 Text read from file: SRR6575612 Read 1120568 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575612 Written 1120568 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575612 Text read from file: SRR6575613 Read 1243749 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575613 Written 1243749 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575613 Text read from file: SRR6575614 Read 1261686 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575614 Written 1261686 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575614 Text read from file: SRR6575615 Read 1111827 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575615 Written 1111827 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575615 Text read from file: SRR6575616 Read 698749 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575616 Written 698749 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575616 Text read from file: SRR6575617 Read 713985 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575617 Written 713985 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575617 Text read from file: SRR6575618 Read 1608044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575618 Written 1608044 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575618 Text read from file: SRR6575619 Read 1575563 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575619 Written 1575563 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575619 Text read from file: SRR6575620 Read 3667472 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575620 Written 3667472 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575620 Text read from file: SRR6575621 Read 3426752 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575621 Written 3426752 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575621 Text read from file: SRR6575622 Read 2155998 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575622 Written 2155998 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575622 Text read from file: SRR6575623 Read 2071099 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575623 Written 2071099 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575623 Text read from file: SRR6575624 Read 3211478 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575624 Written 3211478 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575624 Text read from file: SRR6575625 Read 2950570 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575625 Written 2950570 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575625 Text read from file: SRR6575626 Read 1002784 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575626 Written 1002784 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575626 Text read from file: SRR6575627 Read 3380227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575627 Written 3380227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575627 Text read from file: SRR6575628 Read 3258573 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575628 Written 3258573 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575628 Text read from file: SRR6575629 Read 1142983 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575629 Written 1142983 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575629 Text read from file: SRR6575630 Read 1123226 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575630 Written 1123226 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575630 Text read from file: SRR6575631 Read 3315474 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575631 Written 3315474 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575631 Text read from file: SRR6575632 Read 3121304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575632 Written 3121304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575632 Text read from file: SRR6575633 Read 877037 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575633 Written 877037 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575633 Text read from file: SRR6575634 Read 872689 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575634 Written 872689 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575634 Text read from file: SRR6575635 Read 967173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575635 Written 967173 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575635 Text read from file: SRR6575636 Read 960727 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575636 Written 960727 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575636 Text read from file: SRR6575637 Read 328650 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575637 Written 328650 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575637 Text read from file: SRR6575638 Read 923421 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575638 Written 923421 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575638 Text read from file: SRR6575639 Read 943473 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575639 Written 943473 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575639 Text read from file: SRR6575640 Read 1094311 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575640 Written 1094311 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575640 Text read from file: SRR6575641 Read 1082797 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575641 Written 1082797 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575641 Text read from file: SRR6575642 Read 1077548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575642 Written 1077548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575642 Text read from file: SRR6575643 Read 1085928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575643 Written 1085928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575643 Text read from file: SRR6575644 Read 502487 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575644 Written 502487 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575644 Text read from file: SRR6575645 Read 385304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575645 Written 385304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575645 Text read from file: SRR6575646 Read 975400 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575646 Written 975400 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575646 Text read from file: SRR6575647 Read 992898 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575647 Written 992898 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575647 Text read from file: SRR6575648 Read 300499 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575648 Written 300499 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575648 Text read from file: SRR6575649 Read 885793 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575649 Written 885793 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575649 Text read from file: SRR6575650 Read 891204 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575650 Written 891204 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575650 Text read from file: SRR6575651 Read 5033101 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575651 Written 5033101 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575651 Text read from file: SRR6575652 Read 4529116 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575652 Written 4529116 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575652 Text read from file: SRR6575653 Read 2622962 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575653 Written 2622962 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575653 Text read from file: SRR6575654 Read 2226212 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575654 Written 2226212 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575654 Text read from file: SRR6575655 Read 3639561 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575655 Written 3639561 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575655 Text read from file: SRR6575656 Read 3368040 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575656 Written 3368040 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575656 Text read from file: SRR6575657 Read 2592902 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575657 Written 2592902 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575657 Text read from file: SRR6575658 Read 2402219 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575658 Written 2402219 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575658 Text read from file: SRR6575659 Read 426633 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575659 Written 426633 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575659 Text read from file: SRR6575660 Read 1004605 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575660 Written 1004605 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575660 Text read from file: SRR6575661 Read 1013540 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575661 Written 1013540 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575661 Text read from file: SRR6575662 Read 4189207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575662 Written 4189207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575662 Text read from file: SRR6575663 Read 3909700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575663 Written 3909700 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575663 Text read from file: SRR6575664 Read 3684732 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575664 Written 3684732 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575664 Text read from file: SRR6575665 Read 3455482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575665 Written 3455482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575665 Text read from file: SRR6575666 Read 5256152 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575666 Written 5256152 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575666 Text read from file: SRR6575667 Read 4812831 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575667 Written 4812831 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575667 Text read from file: SRR6575668 Read 2935163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575668 Written 2935163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575668 Text read from file: SRR6575669 Read 2741675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575669 Written 2741675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575669 Text read from file: SRR6575670 Read 390807 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575670 Written 390807 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575670 Text read from file: SRR6575671 Read 3338093 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575671 Written 3338093 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575671 Text read from file: SRR6575672 Read 3158970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575672 Written 3158970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575672 Text read from file: SRR6575673 Read 701661 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575673 Written 701661 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575673 Text read from file: SRR6575674 Read 706351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575674 Written 706351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575674 Text read from file: SRR6575675 Read 2259227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575675 Written 2259227 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575675 Text read from file: SRR6575676 Read 2088200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575676 Written 2088200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575676 Text read from file: SRR6575677 Read 3047357 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575677 Written 3047357 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575677 Text read from file: SRR6575678 Read 2816542 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575678 Written 2816542 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575678 Text read from file: SRR6575679 Read 754673 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575679 Written 754673 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575679 Text read from file: SRR6575680 Read 763451 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575680 Written 763451 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575680 Text read from file: SRR6575681 Read 266730 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575681 Written 266730 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575681 Text read from file: SRR6575682 Read 935427 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575682 Written 935427 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575682 Text read from file: SRR6575683 Read 933565 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575683 Written 933565 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575683 Text read from file: SRR6575684 Read 1402032 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575684 Written 1402032 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575684 Text read from file: SRR6575685 Read 1305363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575685 Written 1305363 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575685 Text read from file: SRR6575686 Read 2699757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575686 Written 2699757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575686 Text read from file: SRR6575687 Read 2542796 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575687 Written 2542796 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575687 Text read from file: SRR6575688 Read 3312641 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575688 Written 3312641 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575688 Text read from file: SRR6575689 Read 3121506 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575689 Written 3121506 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575689 Text read from file: SRR6575690 Read 521064 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575690 Written 521064 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575690 Text read from file: SRR6575691 Read 372855 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575691 Written 372855 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575691 Text read from file: SRR6575692 Read 245992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575692 Written 245992 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575692 Text read from file: SRR6575693 Read 1203719 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575693 Written 1203719 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575693 Text read from file: SRR6575694 Read 1180625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575694 Written 1180625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575694 Text read from file: SRR6575695 Read 2876083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575695 Written 2876083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575695 Text read from file: SRR6575696 Read 2672834 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575696 Written 2672834 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575696 Text read from file: SRR6575697 Read 2521024 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575697 Written 2521024 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575697 Text read from file: SRR6575698 Read 2387350 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575698 Written 2387350 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575698 Text read from file: SRR6575699 Read 966974 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575699 Written 966974 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575699 Text read from file: SRR6575700 Read 876356 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575700 Written 876356 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575700 Text read from file: SRR6575701 Read 977117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575701 Written 977117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575701 Text read from file: SRR6575702 Read 965923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575702 Written 965923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575702 Text read from file: SRR6575703 Read 654091 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575703 Written 654091 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575703 Text read from file: SRR6575704 Read 601913 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575704 Written 601913 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575704 Text read from file: SRR6575705 Read 3342094 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575705 Written 3342094 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575705 Text read from file: SRR6575706 Read 3075854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575706 Written 3075854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575706 Text read from file: SRR6575707 Read 2499969 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575707 Written 2499969 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575707 Text read from file: SRR6575708 Read 2276299 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575708 Written 2276299 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575708 Text read from file: SRR6575709 Read 1086476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575709 Written 1086476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575709 Text read from file: SRR6575710 Read 1053655 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575710 Written 1053655 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575710 Text read from file: SRR6575711 Read 809098 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575711 Written 809098 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575711 Text read from file: SRR6575712 Read 797708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575712 Written 797708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575712 Text read from file: SRR6575713 Read 3329734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575713 Written 3329734 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575713 Text read from file: SRR6575714 Read 3097255 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575714 Written 3097255 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575714 Text read from file: SRR6575715 Read 550767 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575715 Written 550767 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575715 Text read from file: SRR6575716 Read 465119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575716 Written 465119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575716 Text read from file: SRR6575717 Read 371594 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575717 Written 371594 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575717 Text read from file: SRR6575718 Read 603996 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575718 Written 603996 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575718 Text read from file: SRR6575719 Read 612121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575719 Written 612121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575719 Text read from file: SRR6575720 Read 3140948 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575720 Written 3140948 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575720 Text read from file: SRR6575721 Read 3033373 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575721 Written 3033373 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575721 Text read from file: SRR6575722 Read 1181404 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575722 Written 1181404 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575722 Text read from file: SRR6575723 Read 1033542 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575723 Written 1033542 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575723 Text read from file: SRR6575724 Read 1034020 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575724 Written 1034020 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575724 Text read from file: SRR6575725 Read 930389 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575725 Written 930389 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575725 Text read from file: SRR6575726 Read 362347 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575726 Written 362347 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575726 Text read from file: SRR6575727 Read 682307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575727 Written 682307 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575727 Text read from file: SRR6575728 Read 646618 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575728 Written 646618 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575728 Text read from file: SRR6575729 Read 1128811 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575729 Written 1128811 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575729 Text read from file: SRR6575730 Read 1031246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575730 Written 1031246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575730 Text read from file: SRR6575731 Read 705466 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575731 Written 705466 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575731 Text read from file: SRR6575732 Read 652579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575732 Written 652579 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575732 Text read from file: SRR6575733 Read 718814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575733 Written 718814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575733 Text read from file: SRR6575734 Read 667643 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575734 Written 667643 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575734 Text read from file: SRR6575735 Read 1141117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575735 Written 1141117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575735 Text read from file: SRR6575736 Read 1031802 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575736 Written 1031802 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575736 Text read from file: SRR6575737 Read 328121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575737 Written 328121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575737 Text read from file: SRR6575738 Read 808418 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575738 Written 808418 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575738 Text read from file: SRR6575739 Read 738454 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575739 Written 738454 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575739 Text read from file: SRR6575740 Read 585062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575740 Written 585062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575740 Text read from file: SRR6575741 Read 556305 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575741 Written 556305 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575741 Text read from file: SRR6575742 Read 448200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575742 Written 448200 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575742 Text read from file: SRR6575743 Read 416814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575743 Written 416814 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575743 Text read from file: SRR6575744 Read 865646 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575744 Written 865646 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575744 Text read from file: SRR6575745 Read 792288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575745 Written 792288 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575745 Text read from file: SRR6575746 Read 175004 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575746 Written 175004 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575746 Text read from file: SRR6575747 Read 176309 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575747 Written 176309 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575747 Text read from file: SRR6575748 Read 146368 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575748 Written 146368 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575748 Text read from file: SRR6575749 Read 1378197 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575749 Written 1378197 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575749 Text read from file: SRR6575750 Read 1212561 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575750 Written 1212561 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575750 Text read from file: SRR6575751 Read 1313305 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575751 Written 1313305 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575751 Text read from file: SRR6575752 Read 1167549 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575752 Written 1167549 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575752 Text read from file: SRR6575753 Read 823292 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575753 Written 823292 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575753 Text read from file: SRR6575754 Read 769398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575754 Written 769398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575754 Text read from file: SRR6575755 Read 1189160 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575755 Written 1189160 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575755 Text read from file: SRR6575756 Read 1048463 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575756 Written 1048463 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575756 Text read from file: SRR6575757 Read 1133957 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575757 Written 1133957 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575757 Text read from file: SRR6575758 Read 1014413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575758 Written 1014413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575758 Text read from file: SRR6575759 Read 133865 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575759 Written 133865 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575759 Text read from file: SRR6575760 Read 641098 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575760 Written 641098 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575760 Text read from file: SRR6575761 Read 592961 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575761 Written 592961 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575761 Text read from file: SRR6575762 Read 722625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575762 Written 722625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575762 Text read from file: SRR6575763 Read 680970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575763 Written 680970 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575763 Text read from file: SRR6575764 Read 923962 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575764 Written 923962 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575764 Text read from file: SRR6575765 Read 851802 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575765 Written 851802 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575765 Text read from file: SRR6575766 Read 911728 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575766 Written 911728 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575766 Text read from file: SRR6575767 Read 802708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575767 Written 802708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575767 Text read from file: SRR6575768 Read 532636 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575768 Written 532636 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575768 Text read from file: SRR6575769 Read 515569 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575769 Written 515569 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575769 Text read from file: SRR6575770 Read 114134 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575770 Written 114134 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575770 Text read from file: SRR6575771 Read 581777 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575771 Written 581777 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575771 Text read from file: SRR6575772 Read 549703 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575772 Written 549703 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575772 Text read from file: SRR6575773 Read 355195 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575773 Written 355195 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575773 Text read from file: SRR6575774 Read 345351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575774 Written 345351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575774 Text read from file: SRR6575775 Read 1240463 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575775 Written 1240463 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575775 Text read from file: SRR6575776 Read 1128763 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575776 Written 1128763 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575776 Text read from file: SRR6575777 Read 1092644 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575777 Written 1092644 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575777 Text read from file: SRR6575778 Read 988931 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575778 Written 988931 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575778 Text read from file: SRR6575779 Read 1041348 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575779 Written 1041348 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575779 Text read from file: SRR6575780 Read 926923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575780 Written 926923 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575780 Text read from file: SRR6575781 Read 107571 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575781 Written 107571 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575781 Text read from file: SRR6575782 Read 596854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575782 Written 596854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575782 Text read from file: SRR6575783 Read 555062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575783 Written 555062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575783 Text read from file: SRR6575784 Read 614 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575784 Written 614 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575784 Text read from file: SRR6575785 Read 623 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575785 Written 623 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575785 Text read from file: SRR6575786 Read 956664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575786 Written 956664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575786 Text read from file: SRR6575787 Read 878206 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575787 Written 878206 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575787 Text read from file: SRR6575788 Read 833887 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575788 Written 833887 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575788 Text read from file: SRR6575789 Read 778223 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575789 Written 778223 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575789 Text read from file: SRR6575790 Read 1796621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575790 Written 1796621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575790 Text read from file: SRR6575791 Read 1619180 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575791 Written 1619180 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575791 Text read from file: SRR6575792 Read 658889 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575792 Written 658889 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575792 Text read from file: SRR6575793 Read 372 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575793 Written 372 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575793 Text read from file: SRR6575794 Read 398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575794 Written 398 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575794 Text read from file: SRR6575795 Read 438502 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575795 Written 438502 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575795 Text read from file: SRR6575796 Read 429087 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575796 Written 429087 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575796 Text read from file: SRR6575797 Read 1485329 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575797 Written 1485329 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575797 Text read from file: SRR6575798 Read 1343638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575798 Written 1343638 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575798 Text read from file: SRR6575799 Read 507761 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575799 Written 507761 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575799 Text read from file: SRR6575800 Read 495183 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575800 Written 495183 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575800 Text read from file: SRR6575801 Read 1395884 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575801 Written 1395884 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575801 Text read from file: SRR6575802 Read 1231845 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575802 Written 1231845 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575802 Text read from file: SRR6575803 Read 590521 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575803 Written 590521 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575803 Text read from file: SRR6575804 Read 1101688 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575804 Written 1101688 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575804 Text read from file: SRR6575805 Read 1016758 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575805 Written 1016758 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575805 Text read from file: SRR6575806 Read 855130 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575806 Written 855130 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575806 Text read from file: SRR6575807 Read 803258 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575807 Written 803258 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575807 Text read from file: SRR6575808 Read 960928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575808 Written 960928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575808 Text read from file: SRR6575809 Read 882525 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575809 Written 882525 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575809 Text read from file: SRR6575810 Read 918911 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575810 Written 918911 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575810 Text read from file: SRR6575811 Read 842764 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575811 Written 842764 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575811 Text read from file: SRR6575812 Read 1399054 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575812 Written 1399054 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575812 Text read from file: SRR6575813 Read 1301809 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575813 Written 1301809 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575813 Text read from file: SRR6575814 Read 312393 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575814 Written 312393 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575814 Text read from file: SRR6575815 Read 216039 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575815 Written 216039 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575815 Text read from file: SRR6575816 Read 672352 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575816 Written 672352 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575816 Text read from file: SRR6575817 Read 642475 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575817 Written 642475 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575817 Text read from file: SRR6575818 Read 331669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575818 Written 331669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575818 Text read from file: SRR6575819 Read 329280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575819 Written 329280 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575819 Text read from file: SRR6575820 Read 1085944 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575820 Written 1085944 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575820 Text read from file: SRR6575821 Read 1007484 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575821 Written 1007484 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575821 Text read from file: SRR6575822 Read 892475 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575822 Written 892475 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575822 Text read from file: SRR6575823 Read 855548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575823 Written 855548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575823 Text read from file: SRR6575824 Read 1310808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575824 Written 1310808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575824 Text read from file: SRR6575825 Read 1192560 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575825 Written 1192560 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575825 Text read from file: SRR6575826 Read 198964 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575826 Written 198964 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575826 Text read from file: SRR6575827 Read 1560577 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575827 Written 1560577 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575827 Text read from file: SRR6575828 Read 1426721 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575828 Written 1426721 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575828 Text read from file: SRR6575829 Read 1267361 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575829 Written 1267361 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575829 Text read from file: SRR6575830 Read 1155984 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575830 Written 1155984 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575830 Text read from file: SRR6575831 Read 1622119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575831 Written 1622119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575831 Text read from file: SRR6575832 Read 1450920 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575832 Written 1450920 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575832 Text read from file: SRR6575833 Read 1289328 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575833 Written 1289328 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575833 Text read from file: SRR6575834 Read 1156894 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575834 Written 1156894 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575834 Text read from file: SRR6575835 Read 1239205 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575835 Written 1239205 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575835 Text read from file: SRR6575836 Read 1099883 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575836 Written 1099883 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575836 Text read from file: SRR6575837 Read 386837 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575837 Written 386837 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575837 Text read from file: SRR6575838 Read 999120 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575838 Written 999120 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575838 Text read from file: SRR6575839 Read 933823 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575839 Written 933823 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575839 Text read from file: SRR6575840 Read 740720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575840 Written 740720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575840 Text read from file: SRR6575841 Read 684026 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575841 Written 684026 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575841 Text read from file: SRR6575842 Read 988246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575842 Written 988246 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575842 Text read from file: SRR6575843 Read 922355 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575843 Written 922355 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575843 Text read from file: SRR6575844 Read 1356617 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575844 Written 1356617 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575844 Text read from file: SRR6575845 Read 1205942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575845 Written 1205942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575845 Text read from file: SRR6575846 Read 620931 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575846 Written 620931 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575846 Text read from file: SRR6575847 Read 596550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575847 Written 596550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575847 Text read from file: SRR6575848 Read 341108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575848 Written 341108 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575848 Text read from file: SRR6575849 Read 1516374 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575849 Written 1516374 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575849 Text read from file: SRR6575850 Read 1372287 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575850 Written 1372287 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575850 Text read from file: SRR6575851 Read 1551808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575851 Written 1551808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575851 Text read from file: SRR6575852 Read 1424668 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575852 Written 1424668 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575852 Text read from file: SRR6575853 Read 479176 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575853 Written 479176 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575853 Text read from file: SRR6575854 Read 468121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575854 Written 468121 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575854 Text read from file: SRR6575855 Read 795304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575855 Written 795304 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575855 Text read from file: SRR6575856 Read 740024 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575856 Written 740024 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575856 Text read from file: SRR6575857 Read 1734373 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575857 Written 1734373 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575857 Text read from file: SRR6575858 Read 1561662 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575858 Written 1561662 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575858 Text read from file: SRR6575859 Read 338434 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575859 Written 338434 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575859 Text read from file: SRR6575860 Read 1368479 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575860 Written 1368479 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575860 Text read from file: SRR6575861 Read 1230956 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575861 Written 1230956 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575861 Text read from file: SRR6575862 Read 1571037 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575862 Written 1571037 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575862 Text read from file: SRR6575863 Read 1435413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575863 Written 1435413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575863 Text read from file: SRR6575864 Read 455727 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575864 Written 455727 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575864 Text read from file: SRR6575865 Read 367942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575865 Written 367942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575865 Text read from file: SRR6575866 Read 1439372 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575866 Written 1439372 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575866 Text read from file: SRR6575867 Read 1329353 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575867 Written 1329353 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575867 Text read from file: SRR6575868 Read 1087722 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575868 Written 1087722 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575868 Text read from file: SRR6575869 Read 989691 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575869 Written 989691 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575869 Text read from file: SRR6575870 Read 309898 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575870 Written 309898 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575870 Text read from file: SRR6575871 Read 1301359 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575871 Written 1301359 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575871 Text read from file: SRR6575872 Read 1155151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575872 Written 1155151 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575872 Text read from file: SRR6575873 Read 1454658 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575873 Written 1454658 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575873 Text read from file: SRR6575874 Read 1327906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575874 Written 1327906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575874 Text read from file: SRR6575875 Read 666636 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575875 Written 666636 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575875 Text read from file: SRR6575876 Read 637083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575876 Written 637083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575876 Text read from file: SRR6575877 Read 820757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575877 Written 820757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575877 Text read from file: SRR6575878 Read 761757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575878 Written 761757 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575878 Text read from file: SRR6575879 Read 435019 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575879 Written 435019 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575879 Text read from file: SRR6575880 Read 423481 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575880 Written 423481 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575880 Text read from file: SRR6575881 Read 325625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575881 Written 325625 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575881 Text read from file: SRR6575882 Read 3376 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575882 Written 3376 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575882 Text read from file: SRR6575883 Read 2937 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575883 Written 2937 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575883 Text read from file: SRR6575884 Read 589982 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575884 Written 589982 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575884 Text read from file: SRR6575885 Read 443350 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575885 Written 443350 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575885 Text read from file: SRR6575886 Read 483664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575886 Written 483664 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575886 Text read from file: SRR6575887 Read 460511 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575887 Written 460511 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575887 Text read from file: SRR6575888 Read 1268669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575888 Written 1268669 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575888 Text read from file: SRR6575889 Read 1139328 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575889 Written 1139328 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575889 Text read from file: SRR6575890 Read 1765813 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575890 Written 1765813 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575890 Text read from file: SRR6575891 Read 1551384 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575891 Written 1551384 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575891 Text read from file: SRR6575892 Read 293258 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575892 Written 293258 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575892 Text read from file: SRR6575893 Read 813676 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575893 Written 813676 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575893 Text read from file: SRR6575894 Read 776117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575894 Written 776117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575894 Text read from file: SRR6575895 Read 697062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575895 Written 697062 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575895 Text read from file: SRR6575896 Read 658828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575896 Written 658828 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575896 Text read from file: SRR6575897 Read 1010051 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575897 Written 1010051 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575897 Text read from file: SRR6575898 Read 927703 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575898 Written 927703 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575898 Text read from file: SRR6575899 Read 1029652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575899 Written 1029652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575899 Text read from file: SRR6575900 Read 947114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575900 Written 947114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575900 Text read from file: SRR6575901 Read 1483720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575901 Written 1483720 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575901 Text read from file: SRR6575902 Read 1306138 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575902 Written 1306138 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575902 Text read from file: SRR6575903 Read 584049 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575903 Written 584049 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575903 Text read from file: SRR6575904 Read 1116014 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575904 Written 1116014 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575904 Text read from file: SRR6575905 Read 987083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575905 Written 987083 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575905 Text read from file: SRR6575906 Read 560249 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575906 Written 560249 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575906 Text read from file: SRR6575907 Read 541312 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575907 Written 541312 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575907 Text read from file: SRR6575908 Read 1480528 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575908 Written 1480528 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575908 Text read from file: SRR6575909 Read 1309351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575909 Written 1309351 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575909 Text read from file: SRR6575910 Read 1862548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575910 Written 1862548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575910 Text read from file: SRR6575911 Read 1662126 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575911 Written 1662126 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575911 Text read from file: SRR6575912 Read 1698265 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575912 Written 1698265 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575912 Text read from file: SRR6575913 Read 1488517 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575913 Written 1488517 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575913 Text read from file: SRR6575914 Read 534365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575914 Written 534365 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575914 Text read from file: SRR6575915 Read 473981 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575915 Written 473981 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575915 Text read from file: SRR6575916 Read 465436 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575916 Written 465436 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575916 Text read from file: SRR6575917 Read 1683117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575917 Written 1683117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575917 Text read from file: SRR6575918 Read 1512739 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575918 Written 1512739 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575918 Text read from file: SRR6575919 Read 1294621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575919 Written 1294621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575919 Text read from file: SRR6575920 Read 1184400 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575920 Written 1184400 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575920 Text read from file: SRR6575921 Read 397112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575921 Written 397112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575921 Text read from file: SRR6575922 Read 389550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575922 Written 389550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575922 Text read from file: SRR6575923 Read 1411890 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575923 Written 1411890 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575923 Text read from file: SRR6575924 Read 1289801 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575924 Written 1289801 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575924 Text read from file: SRR6575925 Read 285667 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575925 Written 285667 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575925 Text read from file: SRR6575926 Read 320943 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575926 Written 320943 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575926 Text read from file: SRR6575927 Read 1124132 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575927 Written 1124132 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575927 Text read from file: SRR6575928 Read 1044274 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575928 Written 1044274 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575928 Text read from file: SRR6575929 Read 494344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575929 Written 494344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575929 Text read from file: SRR6575930 Read 498737 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575930 Written 498737 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575930 Text read from file: SRR6575931 Read 750708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575931 Written 750708 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575931 Text read from file: SRR6575932 Read 693596 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575932 Written 693596 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575932 Text read from file: SRR6575933 Read 1126646 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575933 Written 1126646 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575933 Text read from file: SRR6575934 Read 1021493 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575934 Written 1021493 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575934 Text read from file: SRR6575935 Read 1061838 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575935 Written 1061838 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575935 Text read from file: SRR6575936 Read 981260 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575936 Written 981260 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575936 Text read from file: SRR6575937 Read 299633 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575937 Written 299633 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575937 Text read from file: SRR6575938 Read 1082016 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575938 Written 1082016 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575938 Text read from file: SRR6575939 Read 970322 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575939 Written 970322 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575939 Text read from file: SRR6575940 Read 801617 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575940 Written 801617 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575940 Text read from file: SRR6575941 Read 744135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575941 Written 744135 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575941 Text read from file: SRR6575942 Read 1125675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575942 Written 1125675 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575942 Text read from file: SRR6575943 Read 998207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575943 Written 998207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575943 Text read from file: 66 2018-10-10T17:20:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/66' cannot be opened as database or table Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575267 2018-10-10T17:20:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575267/fastq' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575267' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575268 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575268/fastq' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575268' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575269 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575269/fastq' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575269' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575270 2018-10-10T17:20:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575270/fastq' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575270' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575271 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575271/fastq' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575271' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575272 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575272/fastq' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575272' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575273 2018-10-10T17:20:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575273/fastq' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575273' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575274 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575274/fastq' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575274' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575275 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575275/fastq' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575275' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575276 2018-10-10T17:20:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575276/fastq' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575276' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575277 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575277/fastq' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575277' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575278 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575278/fastq' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575278' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575279 2018-10-10T17:20:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575279/fastq' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575279' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575280 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575280/fastq' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575280' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575281 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575281/fastq' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575281' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575282 2018-10-10T17:20:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575282/fastq' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575282' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575283 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575283/fastq' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575283' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575284 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575284/fastq' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575284' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575285 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575285/fastq' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575285' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575286 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575286/fastq' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575286' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575287 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575287/fastq' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575287' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575288 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575288/fastq' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575288' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575289 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575289/fastq' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575289' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575290 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575290/fastq' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575290' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575291 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575291/fastq' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575291' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575292 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575292/fastq' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575292' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575293 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575293/fastq' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575293' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575294 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575294/fastq' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575294' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575295 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575295/fastq' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575295' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575296 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575296/fastq' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575296' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575297 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575297/fastq' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575297' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575298 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575298/fastq' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575298' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575299 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575299/fastq' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575299' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575300 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575300/fastq' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575300' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575301 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575301/fastq' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575301' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575302 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575302/fastq' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575302' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:58 SRR6575303 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:58' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575303/fastq' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575303' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575304 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575304/fastq' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575304' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575305 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575305/fastq' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575305' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575306 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575306/fastq' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575306' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575307 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575307/fastq' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575307' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575308 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575308/fastq' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575308' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575309 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575309/fastq' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575309' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575310 2018-10-10T17:20:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575310/fastq' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575310' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575311 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575311/fastq' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575311' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575312 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575312/fastq' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575312' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575313 2018-10-10T17:20:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575313/fastq' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575313' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575314 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575314/fastq' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575314' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575315 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575315/fastq' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575315' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575316 2018-10-10T17:20:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575316/fastq' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575316' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575317 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575317/fastq' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575317' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575318 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575318/fastq' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575318' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575319 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575319/fastq' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575319' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575320 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575320/fastq' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575320' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575321 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575321/fastq' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575321' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575322 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575322/fastq' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575322' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575323 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575323/fastq' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575323' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575324 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575324/fastq' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575324' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 10:59 SRR6575325 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10:59' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575325/fastq' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575325' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575326 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575326/fastq' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575326' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575327 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575327/fastq' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575327' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575328 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575328/fastq' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575328' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575329 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575329/fastq' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575329' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575330 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575330/fastq' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575330' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575331 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575331/fastq' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575331' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575332 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575332/fastq' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575332' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575333 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575333/fastq' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575333' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575334 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575334/fastq' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575334' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575335 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575335/fastq' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575335' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:00 SRR6575336 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:00' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575336/fastq' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575336' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575337 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575337/fastq' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575337' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575338 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575338/fastq' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575338' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575339 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575339/fastq' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575339' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575340 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575340/fastq' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575340' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575341 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575341/fastq' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575341' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575342 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575342/fastq' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575342' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575343 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575343/fastq' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575343' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575344 2018-10-10T17:20:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575344/fastq' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575344' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575345 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575345/fastq' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575345' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575346 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575346/fastq' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575346' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575347 2018-10-10T17:20:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575347/fastq' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575347' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575348 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575348/fastq' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575348' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575349 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575349/fastq' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575349' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575350 2018-10-10T17:20:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575350/fastq' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575350' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575351 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575351/fastq' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575351' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575352 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575352/fastq' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575352' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575353 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575353/fastq' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575353' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575354 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575354/fastq' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575354' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:01 SRR6575355 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:01' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575355/fastq' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575355' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575356 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575356/fastq' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575356' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575357 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575357/fastq' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575357' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575358 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575358/fastq' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575358' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575359 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:20:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575359/fastq' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575359' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575360 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575360/fastq' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575360' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575361 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575361/fastq' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575361' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575362 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575362/fastq' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575362' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575363 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575363/fastq' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575363' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575364 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575364/fastq' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575364' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575365 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575365/fastq' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575365' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575366 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575366/fastq' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575366' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575367 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575367/fastq' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575367' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575368 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575368/fastq' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575368' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575369 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575369/fastq' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575369' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575370 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575370/fastq' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575370' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575371 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575371/fastq' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575371' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575372 2018-10-10T17:21:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575372/fastq' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575372' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575373 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575373/fastq' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575373' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:02 SRR6575374 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:02' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575374/fastq' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575374' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575375 2018-10-10T17:21:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575375/fastq' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575375' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575376 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575376/fastq' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575376' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575377 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575377/fastq' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575377' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575378 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575378/fastq' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575378' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575379 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575379/fastq' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575379' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575380 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575380/fastq' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575380' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575381 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575381/fastq' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575381' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575382 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575382/fastq' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575382' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575383 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575383/fastq' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575383' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575384 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575384/fastq' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575384' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575385 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575385/fastq' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575385' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575386 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575386/fastq' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575386' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:03 SRR6575387 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:03' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575387/fastq' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575387' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575388 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575388/fastq' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575388' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575389 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575389/fastq' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575389' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575390 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575390/fastq' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575390' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575391 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575391/fastq' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575391' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575392 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575392/fastq' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575392' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575393 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575393/fastq' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575393' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575394 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575394/fastq' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575394' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575395 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575395/fastq' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575395' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575396 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575396/fastq' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575396' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575397 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575397/fastq' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575397' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575398 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575398/fastq' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575398' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575399 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575399/fastq' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575399' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575400 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575400/fastq' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575400' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575401 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575401/fastq' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575401' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575402 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575402/fastq' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575402' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575403 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575403/fastq' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575403' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:04 SRR6575404 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:04' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575404/fastq' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575404' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575405 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575405/fastq' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575405' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575406 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575406/fastq' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575406' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575407 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575407/fastq' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575407' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575408 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575408/fastq' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575408' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575409 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575409/fastq' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575409' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575410 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575410/fastq' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575410' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575411 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575411/fastq' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575411' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575412 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575412/fastq' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575412' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575413 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575413/fastq' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575413' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575414 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575414/fastq' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575414' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575415 2018-10-10T17:21:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575415/fastq' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575415' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575416 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575416/fastq' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575416' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575417 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575417/fastq' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575417' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575418 2018-10-10T17:21:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575418/fastq' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575418' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575419 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575419/fastq' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575419' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575420 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575420/fastq' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575420' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575421 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575421/fastq' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575421' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575422 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575422/fastq' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575422' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575423 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575423/fastq' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575423' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575424 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575424/fastq' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575424' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575425 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575425/fastq' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575425' cannot be opened as database or table Read 0 spots total Written 0 spots total Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:21:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:48 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:49 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:50 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:51 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:52 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:53 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:54 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:55 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:56 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:57 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:58 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:22:59 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:00 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:01 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:02 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:03 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:04 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:05 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:06 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:07 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:08 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:09 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:10 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:11 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:12 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:13 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:14 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:15 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:16 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:17 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:18 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:19 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:20 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:21 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:22 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:23 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:24 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:25 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:26 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:27 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:28 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:29 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:30 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:31 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:32 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:33 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:34 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:35 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:36 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:37 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:38 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:39 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:40 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:41 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:42 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:43 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:44 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:45 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'Oct' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '10' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '11:05' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426/fastq' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/drwxr-sr-x' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'SRR6575426' cannot be opened as database or table Read 0 spots total Written 0 spots total /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/script_fastq_dump.sh: line 7: read: read error: 0: Stale file handle Text read from file: drwxr-sr-x 3 kkarri waxmanlab 512 Oct 10 11:05 SRR6575426 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '3' cannot be opened as database or table 2018-10-10T17:23:46 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'kkarri' cannot be opened as database or table 2018-10-10T17:23:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path 'waxmanlab' cannot be opened as database or table 2018-10-10T17:23:47 fastq-dump.2.8.0 err: item not found while constructing within virtual database module - the path '512' cannot be opened as database or table ========================================================== Starting on : Wed Oct 10 13:33:36 EDT 2018 Running on node : scc-ka1 Current job ID : 8757629 Current job name : sra_fastq Task index number : ========================================================== Converting sra to fastq Text read from file: SRR6575943 Read 998207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575943 Written 998207 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575943 Text read from file: SRR6575944 Read 631531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575944 Written 631531 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575944 Text read from file: SRR6575945 Read 579505 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575945 Written 579505 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575945 Text read from file: SRR6575946 Read 984980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575946 Written 984980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575946 Text read from file: SRR6575947 Read 888759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575947 Written 888759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575947 Text read from file: SRR6575948 Read 520058 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575948 Written 520058 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575948 Text read from file: SRR6575949 Read 1072395 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575949 Written 1072395 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575949 Text read from file: SRR6575950 Read 942370 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575950 Written 942370 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575950 Text read from file: SRR6575951 Read 730652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575951 Written 730652 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575951 Text read from file: SRR6575952 Read 662621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575952 Written 662621 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575952 Text read from file: SRR6575953 Read 413809 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575953 Written 413809 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575953 Text read from file: SRR6575954 Read 320908 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575954 Written 320908 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575954 Text read from file: SRR6575955 Read 296896 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575955 Written 296896 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575955 Text read from file: SRR6575956 Read 281799 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575956 Written 281799 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575956 Text read from file: SRR6575957 Read 606147 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575957 Written 606147 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575957 Text read from file: SRR6575958 Read 562181 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575958 Written 562181 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575958 Text read from file: SRR6575959 Read 458635 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575959 Written 458635 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575959 Text read from file: SRR6575960 Read 623296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575960 Written 623296 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575960 Text read from file: SRR6575961 Read 570628 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575961 Written 570628 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575961 Text read from file: SRR6575962 Read 818047 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575962 Written 818047 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575962 Text read from file: SRR6575963 Read 761281 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575963 Written 761281 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575963 Text read from file: SRR6575964 Read 1106984 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575964 Written 1106984 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575964 Text read from file: SRR6575965 Read 998575 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575965 Written 998575 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575965 Text read from file: SRR6575966 Read 459759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575966 Written 459759 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575966 Text read from file: SRR6575967 Read 426609 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575967 Written 426609 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575967 Text read from file: SRR6575968 Read 1114980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575968 Written 1114980 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575968 Text read from file: SRR6575969 Read 1011344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575969 Written 1011344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575969 Text read from file: SRR6575970 Read 378344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575970 Written 378344 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575970 Text read from file: SRR6575971 Read 1245146 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575971 Written 1245146 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575971 Text read from file: SRR6575972 Read 1125063 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575972 Written 1125063 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575972 Text read from file: SRR6575973 Read 173345 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575973 Written 173345 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575973 Text read from file: SRR6575974 Read 156714 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575974 Written 156714 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575974 Text read from file: SRR6575975 Read 214 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575975 Written 214 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575975 Text read from file: SRR6575976 Read 222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575976 Written 222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575976 Text read from file: SRR6575977 Read 387 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575977 Written 387 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575977 Text read from file: SRR6575978 Read 416 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575978 Written 416 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575978 Text read from file: SRR6575979 Read 486800 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575979 Written 486800 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575979 Text read from file: SRR6575980 Read 464548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575980 Written 464548 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575980 Text read from file: SRR6575981 Read 342023 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575981 Written 342023 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575981 Text read from file: SRR6575982 Read 2468 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575982 Written 2468 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575982 Text read from file: SRR6575983 Read 2349 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575983 Written 2349 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575983 Text read from file: SRR6575984 Read 366036 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575984 Written 366036 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575984 Text read from file: SRR6575985 Read 341673 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575985 Written 341673 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575985 Text read from file: SRR6575986 Read 605563 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575986 Written 605563 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575986 Text read from file: SRR6575987 Read 536942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575987 Written 536942 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575987 Text read from file: SRR6575988 Read 1396705 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575988 Written 1396705 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575988 Text read from file: SRR6575989 Read 1259584 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575989 Written 1259584 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575989 Text read from file: SRR6575990 Read 1537926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575990 Written 1537926 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575990 Text read from file: SRR6575991 Read 1371830 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575991 Written 1371830 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575991 Text read from file: SRR6575992 Read 278906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575992 Written 278906 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575992 Text read from file: SRR6575993 Read 1574311 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575993 Written 1574311 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575993 Text read from file: SRR6575994 Read 1411772 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575994 Written 1411772 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575994 Text read from file: SRR6575995 Read 953147 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575995 Written 953147 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575995 Text read from file: SRR6575996 Read 870019 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575996 Written 870019 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575996 Text read from file: SRR6575997 Read 1270854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575997 Written 1270854 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575997 Text read from file: SRR6575998 Read 1153385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575998 Written 1153385 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575998 Text read from file: SRR6575999 Read 1241683 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575999 Written 1241683 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6575999 Text read from file: SRR6576000 Read 1122331 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576000 Written 1122331 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576000 Text read from file: SRR6576001 Read 891163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576001 Written 891163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576001 Text read from file: SRR6576002 Read 798074 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576002 Written 798074 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576002 Text read from file: SRR6576003 Read 259112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576003 Written 259112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576003 Text read from file: SRR6576004 Read 752410 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576004 Written 752410 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576004 Text read from file: SRR6576005 Read 697550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576005 Written 697550 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576005 Text read from file: SRR6576006 Read 1369848 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576006 Written 1369848 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576006 Text read from file: SRR6576007 Read 1216413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576007 Written 1216413 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576007 Text read from file: SRR6576008 Read 1532048 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576008 Written 1532048 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576008 Text read from file: SRR6576009 Read 1360600 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576009 Written 1360600 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576009 Text read from file: SRR6576010 Read 1408223 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576010 Written 1408223 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576010 Text read from file: SRR6576011 Read 1245601 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576011 Written 1245601 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576011 Text read from file: SRR6576012 Read 948872 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576012 Written 948872 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576012 Text read from file: SRR6576013 Read 883928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576013 Written 883928 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576013 Text read from file: SRR6576014 Read 384868 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576014 Written 384868 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576014 Text read from file: SRR6576015 Read 886112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576015 Written 886112 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576015 Text read from file: SRR6576016 Read 808808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576016 Written 808808 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576016 Text read from file: SRR6576017 Read 1963306 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576017 Written 1963306 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576017 Text read from file: SRR6576018 Read 1780974 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576018 Written 1780974 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576018 Text read from file: SRR6576019 Read 506488 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576019 Written 506488 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576019 Text read from file: SRR6576020 Read 475915 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576020 Written 475915 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576020 Text read from file: SRR6576021 Read 1243218 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576021 Written 1243218 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576021 Text read from file: SRR6576022 Read 1131517 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576022 Written 1131517 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576022 Text read from file: SRR6576023 Read 1131587 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576023 Written 1131587 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576023 Text read from file: SRR6576024 Read 971088 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576024 Written 971088 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576024 Text read from file: SRR6576025 Read 345297 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576025 Written 345297 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576025 Text read from file: SRR6576026 Read 1504987 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576026 Written 1504987 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576026 Text read from file: SRR6576027 Read 1366467 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576027 Written 1366467 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576027 Text read from file: SRR6576028 Read 397519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576028 Written 397519 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576028 Text read from file: SRR6576029 Read 370117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576029 Written 370117 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576029 Text read from file: SRR6576030 Read 726571 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576030 Written 726571 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576030 Text read from file: SRR6576031 Read 668013 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576031 Written 668013 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576031 Text read from file: SRR6576032 Read 501986 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576032 Written 501986 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576032 Text read from file: SRR6576033 Read 456431 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576033 Written 456431 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576033 Text read from file: SRR6576034 Read 709825 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576034 Written 709825 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576034 Text read from file: SRR6576035 Read 627737 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576035 Written 627737 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576035 Text read from file: SRR6576036 Read 424222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576036 Written 424222 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576036 Text read from file: SRR6576037 Read 240047 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576037 Written 240047 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576037 Text read from file: SRR6576038 Read 716175 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576038 Written 716175 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576038 Text read from file: SRR6576039 Read 654917 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576039 Written 654917 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576039 Text read from file: SRR6576040 Read 719060 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576040 Written 719060 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576040 Text read from file: SRR6576041 Read 661476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576041 Written 661476 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576041 Text read from file: SRR6576042 Read 1001586 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576042 Written 1001586 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576042 Text read from file: SRR6576043 Read 903803 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576043 Written 903803 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576043 Text read from file: SRR6576044 Read 993119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576044 Written 993119 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576044 Text read from file: SRR6576045 Read 922275 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576045 Written 922275 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576045 Text read from file: SRR6576046 Read 1690009 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576046 Written 1690009 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576046 Text read from file: SRR6576047 Read 1561532 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576047 Written 1561532 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576047 Text read from file: SRR6576048 Read 222897 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576048 Written 222897 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576048 Text read from file: SRR6576049 Read 1523262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576049 Written 1523262 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576049 Text read from file: SRR6576050 Read 1354952 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576050 Written 1354952 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576050 Text read from file: SRR6576051 Read 1444650 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576051 Written 1444650 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576051 Text read from file: SRR6576052 Read 1284580 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576052 Written 1284580 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576052 Text read from file: SRR6576053 Read 962444 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576053 Written 962444 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576053 Text read from file: SRR6576054 Read 887713 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576054 Written 887713 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576054 Text read from file: SRR6576055 Read 1169829 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576055 Written 1169829 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576055 Text read from file: SRR6576056 Read 1036450 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576056 Written 1036450 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576056 Text read from file: SRR6576057 Read 773174 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576057 Written 773174 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576057 Text read from file: SRR6576058 Read 704967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576058 Written 704967 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576058 Text read from file: SRR6576059 Read 307060 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576059 Written 307060 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576059 Text read from file: SRR6576060 Read 901137 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576060 Written 901137 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576060 2018-10-10T17:59:49 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T17:59:50 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576061 Read 836114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576061 Written 836114 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576061 2018-10-10T18:00:05 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T18:00:06 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576062 Read 1497082 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576062 Written 1497082 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576062 2018-10-10T18:00:31 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T18:00:33 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576063 Read 1325163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576063 Written 1325163 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576063 2018-10-10T18:00:55 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T18:00:57 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576064 Read 1037482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576064 Written 1037482 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576064 2018-10-10T18:01:14 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T18:01:16 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576065 Read 919608 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576065 Written 919608 spots for /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/SRR6576065 2018-10-10T18:01:31 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' 2018-10-10T18:01:32 fastq-dump.2.8.0 err: unknown while destroying file within file system module - unknown system error 'Disk quota exceeded(122)' Text read from file: SRR6576066 Text read from file: SRR6576069 Text read from file: SRR6576073