#!/bin/bash


#source ~/.bashrc
#module load sratoolkit/2.8.0

while IFS='' read -r line || [[ -n "$line" ]]; do
    echo "Text read from file: $line"
	
	fastq-dump --outdir /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/$line/fastq --split-files /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq/$line
done < "$1"